Wall clock time and date at job start Tue Mar 31 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34221 * 125.74257 * 2 1 4 4 C 1.38125 * 107.41184 * 180.02562 * 3 2 1 5 5 C 1.47285 * 126.43080 * 179.73893 * 4 3 2 6 6 O 1.21522 * 119.99790 * 180.02562 * 5 4 3 7 7 O 1.34748 * 119.99941 * 0.02616 * 5 4 3 8 8 C 1.45202 * 117.00184 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47117 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46834 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00260 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99782 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00111 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47101 * 60.00197 * 14 12 10 16 16 H 1.48501 * 109.47262 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47066 * 299.99972 * 14 12 10 18 18 C 1.41347 * 107.14551 * 0.02562 * 4 3 2 19 19 C 1.50695 * 125.99945 * 179.97438 * 18 4 3 20 20 C 1.53781 * 113.61820 * 219.14008 * 19 18 4 21 21 C 1.53952 * 87.02002 * 220.04540 * 20 19 18 22 22 C 1.53775 * 113.61765 * 121.52651 * 19 18 4 23 23 N 1.30434 * 108.01298 * 0.02562 * 18 4 3 24 24 H 1.09001 * 109.47308 * 89.99973 * 1 2 3 25 25 H 1.09003 * 109.46835 * 209.99957 * 1 2 3 26 26 H 1.08998 * 109.46796 * 329.99468 * 1 2 3 27 27 H 1.08004 * 126.29594 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47111 * 300.00090 * 8 7 5 29 29 H 1.09002 * 109.47084 * 60.00080 * 8 7 5 30 30 H 1.08996 * 109.47521 * 300.00228 * 9 8 7 31 31 H 1.09002 * 109.46760 * 60.00271 * 9 8 7 32 32 H 0.96996 * 119.99720 * 179.97438 * 13 12 10 33 33 H 1.09011 * 112.84622 * 350.33103 * 19 18 4 34 34 H 1.09006 * 113.61013 * 334.56076 * 20 19 18 35 35 H 1.08997 * 113.61495 * 105.46315 * 20 19 18 36 36 H 1.09002 * 113.53809 * 270.81436 * 21 20 19 37 37 H 1.08997 * 113.74811 * 139.94074 * 21 20 19 38 38 H 1.09001 * 113.61913 * 254.53508 * 22 19 18 39 39 H 1.08996 * 113.61569 * 25.43943 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0894 0.0000 4 6 3.5602 0.6550 -0.0006 5 6 4.7631 1.5048 -0.0062 6 8 5.8666 0.9958 -0.0066 7 8 4.6401 2.8466 -0.0109 8 6 5.8682 3.6213 -0.0169 9 6 5.5300 5.1134 -0.0222 10 6 6.8047 5.9173 -0.0278 11 1 7.7604 5.4143 -0.0279 12 6 6.7508 7.2950 -0.0338 13 7 5.5870 7.9076 -0.0341 14 14 8.3308 8.2915 -0.0414 15 1 9.1204 7.9582 -1.2540 16 1 8.0026 9.7398 -0.0465 17 1 9.1254 7.9688 1.1710 18 6 3.5310 -0.7582 -0.0016 19 6 4.7315 -1.6690 -0.0030 20 6 4.5613 -2.9113 -0.8931 21 6 5.2737 -3.7053 0.2170 22 6 4.7779 -2.6291 1.1973 23 7 2.2825 -1.1358 -0.0021 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9160 2.1168 0.0004 28 1 6.4519 3.3838 0.8725 29 1 6.4474 3.3772 -0.9074 30 1 4.9466 5.3506 -0.9118 31 1 4.9507 5.3578 0.8681 32 1 5.5492 8.8768 -0.0379 33 1 5.6671 -1.1357 -0.1720 34 1 3.5216 -3.2037 -1.0405 35 1 5.1241 -2.8611 -1.8252 36 1 6.3579 -3.7297 0.1074 37 1 4.8441 -4.6907 0.3966 38 1 5.5153 -2.3514 1.9504 39 1 3.7976 -2.8442 1.6225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840640990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:39 Heat of formation + Delta-G solvation = -4.036898 kcal Electronic energy + Delta-G solvation = -20985.777403 eV Core-core repulsion = 17702.558098 eV Total energy + Delta-G solvation = -3283.219306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56299 -39.34507 -38.50375 -35.86405 -33.43827 -33.30619 -30.88904 -29.91731 -28.03021 -25.66594 -25.63527 -24.76315 -22.76548 -21.30264 -20.71771 -19.95126 -18.86950 -17.57002 -16.75794 -16.02650 -16.00511 -15.60250 -15.42767 -15.33943 -15.03294 -14.48246 -13.46942 -13.43460 -13.23685 -12.92929 -12.56787 -12.51121 -12.47725 -12.32282 -12.10752 -11.19822 -11.17947 -11.00214 -10.80627 -10.69250 -10.65455 -10.53761 -10.44878 -9.95815 -9.57400 -9.53302 -9.39715 -9.28507 -8.74144 -8.42187 -6.09033 -4.12933 1.42739 2.03980 2.17943 3.31523 3.33653 3.35668 3.44890 3.47382 4.17940 4.41658 4.50034 4.63030 4.66974 4.74495 4.84341 4.93835 5.02111 5.10517 5.27676 5.30068 5.47573 5.63756 5.67472 5.72978 5.82074 5.85364 5.93484 6.15504 6.16846 6.18472 6.33838 6.49812 6.67798 6.70334 7.10979 7.50156 7.59202 7.65291 7.89670 8.24587 8.41489 8.92549 9.51315 11.02548 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.003498 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.420678 B = 8003.067008 C = 9062.740344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.366 5.366 3 C 0.127 3.873 4 C -0.273 4.273 5 C 0.536 3.464 6 O -0.522 6.522 7 O -0.358 6.358 8 C 0.078 3.922 9 C 0.025 3.975 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.149 3.851 19 C -0.046 4.046 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.125 4.125 23 N -0.301 5.301 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.194 0.806 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -19.349 0.291 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.024 4.024 4 C -0.286 4.286 5 C 0.381 3.619 6 O -0.413 6.413 7 O -0.274 6.274 8 C 0.005 3.995 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.019 4.019 19 C -0.066 4.066 20 C -0.167 4.167 21 C -0.177 4.177 22 C -0.164 4.164 23 N -0.121 5.121 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.211 0.789 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.868 -20.250 0.287 22.984 hybrid contribution 1.253 1.552 -0.016 1.995 sum -9.615 -18.699 0.272 21.027 Atomic orbital electron populations 1.21990 0.73417 1.04971 1.03895 1.48312 1.07139 1.03919 1.54962 1.23360 0.90235 0.94057 0.94748 1.19521 0.91528 0.92852 1.24664 1.19951 0.87558 0.81773 0.72583 1.90725 1.27749 1.75069 1.47733 1.86551 1.40230 1.17413 1.83246 1.23602 0.82190 0.92747 1.00964 1.19157 0.97975 0.85318 0.98745 1.20962 0.92175 0.91185 1.52070 0.92269 1.24976 0.96483 0.97786 0.94891 1.69962 1.23943 1.09199 1.49906 0.86535 0.83189 0.78783 0.78812 1.20050 1.21167 1.20054 1.22219 0.93084 0.91665 0.94906 1.21445 0.94541 0.92326 0.98256 1.22977 1.01419 0.94928 0.97348 1.22827 1.00539 0.97755 0.96605 1.22903 1.01856 0.95451 0.96160 1.77074 1.01022 1.07183 1.26850 0.90219 0.88986 0.88852 0.78880 0.92326 0.92338 0.95426 0.95430 0.92704 0.85106 0.89620 0.91227 0.89924 0.91373 0.91016 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.44 59.85 0.68 1.28 16 2 N -0.37 -4.14 3.98 -67.58 -0.27 -4.41 16 3 C 0.13 1.61 11.33 -16.55 -0.19 1.42 16 4 C -0.27 -4.34 6.13 -105.08 -0.64 -4.98 16 5 C 0.54 10.21 7.95 34.41 0.27 10.49 16 6 O -0.52 -10.78 14.49 -19.28 -0.28 -11.06 16 7 O -0.36 -7.34 10.05 -40.62 -0.41 -7.75 16 8 C 0.08 1.76 5.41 37.16 0.20 1.96 16 9 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 10 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 14 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.15 2.20 6.32 -82.01 -0.52 1.68 16 19 C -0.05 -0.61 3.97 -90.96 -0.36 -0.97 16 20 C -0.13 -1.41 7.63 -25.83 -0.20 -1.61 16 21 C -0.14 -1.33 8.09 -25.83 -0.21 -1.54 16 22 C -0.13 -1.41 7.63 -25.92 -0.20 -1.61 16 23 N -0.30 -4.08 12.12 33.90 0.41 -3.67 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.19 1.94 8.06 -52.48 -0.42 1.52 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.13 1.98 6.00 -51.92 -0.31 1.67 16 34 H 0.09 0.95 7.79 -51.93 -0.40 0.55 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -33.13 336.15 -7.23 -40.36 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -5.75 Total: -2.41 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.71 Total: -6.91 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.88 Total: -33.70 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.69 Total: -18.81 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.13 -7.23 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840640990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.318 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds