Wall clock time and date at job start Tue Mar 31 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34221 * 125.74257 * 2 1 4 4 C 1.38125 * 107.41184 * 180.02562 * 3 2 1 5 5 C 1.47285 * 126.43080 * 179.73893 * 4 3 2 6 6 O 1.21522 * 119.99790 * 180.02562 * 5 4 3 7 7 O 1.34748 * 119.99941 * 0.02616 * 5 4 3 8 8 C 1.45202 * 117.00184 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47117 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46834 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00260 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99782 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00111 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00078 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47101 * 60.00197 * 14 12 10 16 16 H 1.48501 * 109.47262 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47066 * 299.99972 * 14 12 10 18 18 C 1.41347 * 107.14551 * 0.02562 * 4 3 2 19 19 C 1.50695 * 125.99945 * 179.97438 * 18 4 3 20 20 C 1.53781 * 113.61820 * 219.14008 * 19 18 4 21 21 C 1.53952 * 87.02002 * 220.04540 * 20 19 18 22 22 C 1.53775 * 113.61765 * 121.52651 * 19 18 4 23 23 N 1.30434 * 108.01298 * 0.02562 * 18 4 3 24 24 H 1.09001 * 109.47308 * 89.99973 * 1 2 3 25 25 H 1.09003 * 109.46835 * 209.99957 * 1 2 3 26 26 H 1.08998 * 109.46796 * 329.99468 * 1 2 3 27 27 H 1.08004 * 126.29594 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47111 * 300.00090 * 8 7 5 29 29 H 1.09002 * 109.47084 * 60.00080 * 8 7 5 30 30 H 1.08996 * 109.47521 * 300.00228 * 9 8 7 31 31 H 1.09002 * 109.46760 * 60.00271 * 9 8 7 32 32 H 0.96996 * 119.99720 * 179.97438 * 13 12 10 33 33 H 1.09011 * 112.84622 * 350.33103 * 19 18 4 34 34 H 1.09006 * 113.61013 * 334.56076 * 20 19 18 35 35 H 1.08997 * 113.61495 * 105.46315 * 20 19 18 36 36 H 1.09002 * 113.53809 * 270.81436 * 21 20 19 37 37 H 1.08997 * 113.74811 * 139.94074 * 21 20 19 38 38 H 1.09001 * 113.61913 * 254.53508 * 22 19 18 39 39 H 1.08996 * 113.61569 * 25.43943 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0894 0.0000 4 6 3.5602 0.6550 -0.0006 5 6 4.7631 1.5048 -0.0062 6 8 5.8666 0.9958 -0.0066 7 8 4.6401 2.8466 -0.0109 8 6 5.8682 3.6213 -0.0169 9 6 5.5300 5.1134 -0.0222 10 6 6.8047 5.9173 -0.0278 11 1 7.7604 5.4143 -0.0279 12 6 6.7508 7.2950 -0.0338 13 7 5.5870 7.9076 -0.0341 14 14 8.3308 8.2915 -0.0414 15 1 9.1204 7.9582 -1.2540 16 1 8.0026 9.7398 -0.0465 17 1 9.1254 7.9688 1.1710 18 6 3.5310 -0.7582 -0.0016 19 6 4.7315 -1.6690 -0.0030 20 6 4.5613 -2.9113 -0.8931 21 6 5.2737 -3.7053 0.2170 22 6 4.7779 -2.6291 1.1973 23 7 2.2825 -1.1358 -0.0021 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9160 2.1168 0.0004 28 1 6.4519 3.3838 0.8725 29 1 6.4474 3.3772 -0.9074 30 1 4.9466 5.3506 -0.9118 31 1 4.9507 5.3578 0.8681 32 1 5.5492 8.8768 -0.0379 33 1 5.6671 -1.1357 -0.1720 34 1 3.5216 -3.2037 -1.0405 35 1 5.1241 -2.8611 -1.8252 36 1 6.3579 -3.7297 0.1074 37 1 4.8441 -4.6907 0.3966 38 1 5.5153 -2.3514 1.9504 39 1 3.7976 -2.8442 1.6225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840640990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:38 Heat of formation + Delta-G solvation = -22.997530 kcal Electronic energy + Delta-G solvation = -20986.599598 eV Core-core repulsion = 17702.558098 eV Total energy + Delta-G solvation = -3284.041500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61747 -40.89216 -39.40577 -37.49998 -35.41715 -34.30738 -32.51661 -31.45142 -28.83748 -27.26969 -26.51715 -26.13674 -24.06002 -22.86895 -22.11551 -21.13039 -19.83611 -18.99634 -18.35411 -17.77019 -17.48348 -16.80101 -16.52577 -16.47140 -16.27401 -15.94454 -14.96284 -14.65393 -14.36906 -14.21138 -13.97721 -13.67576 -13.36877 -13.36054 -13.11000 -13.00176 -12.89985 -12.56919 -12.54725 -12.20124 -11.88885 -11.62489 -11.54463 -11.42717 -11.41793 -11.39587 -10.97422 -10.58936 -10.37649 -9.82343 -8.25592 -6.38289 0.30178 0.89860 1.30967 1.42539 1.45824 1.53650 1.90413 2.11403 2.42422 3.08875 3.23196 3.54922 3.77456 3.81217 3.90941 4.02404 4.13922 4.21316 4.26786 4.33821 4.41782 4.45478 4.54287 4.70609 4.73763 4.78960 4.84678 4.90142 5.05403 5.07981 5.22435 5.26963 5.34558 5.49877 5.53486 5.64518 5.77348 5.81419 6.09094 6.45317 6.74188 6.86601 7.31193 8.86804 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.003498 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.420678 B = 8003.067008 C = 9062.740344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.354 5.354 3 C 0.145 3.855 4 C -0.313 4.313 5 C 0.535 3.465 6 O -0.546 6.546 7 O -0.361 6.361 8 C 0.093 3.907 9 C 0.033 3.967 10 C -0.552 4.552 11 H 0.064 0.936 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.972 3.028 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 C 0.141 3.859 19 C -0.061 4.061 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.122 4.122 23 N -0.308 5.308 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.220 0.780 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.268 0.732 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 -20.078 0.316 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.130 5.130 3 C -0.009 4.009 4 C -0.326 4.326 5 C 0.382 3.618 6 O -0.438 6.438 7 O -0.278 6.278 8 C 0.020 3.980 9 C -0.004 4.004 10 C -0.589 4.589 11 H 0.082 0.918 12 C -0.191 4.191 13 N -0.565 5.565 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.026 4.026 19 C -0.081 4.081 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.161 4.161 23 N -0.129 5.129 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.139 0.861 27 H 0.236 0.764 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.579 -21.020 0.313 24.001 hybrid contribution 1.288 1.739 -0.027 2.164 sum -10.291 -19.281 0.286 21.858 Atomic orbital electron populations 1.22496 0.70150 1.06966 1.05699 1.48780 1.08788 1.02894 1.52584 1.23680 0.89279 0.95377 0.92582 1.19505 0.91579 0.93108 1.28436 1.20472 0.88565 0.81026 0.71742 1.90706 1.28943 1.75073 1.49102 1.86529 1.38880 1.18539 1.83814 1.23141 0.82903 0.91120 1.00844 1.18961 0.97018 0.87641 0.96770 1.21360 0.92952 0.92096 1.52529 0.91801 1.25932 1.00196 0.98934 0.94074 1.70079 1.26291 1.09752 1.50399 0.85401 0.78677 0.77089 0.79294 1.19108 1.20423 1.19111 1.22411 0.93903 0.91373 0.94888 1.21490 0.93254 0.92937 1.00455 1.22945 1.01691 0.93814 0.97601 1.22795 1.00914 0.97949 0.94723 1.22890 1.01917 0.95507 0.95763 1.77038 1.00639 1.08187 1.27040 0.88441 0.87903 0.86057 0.76367 0.92402 0.92419 0.97352 0.97349 0.92333 0.87546 0.89575 0.90979 0.89238 0.89478 0.91319 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.44 127.77 1.46 2.22 16 2 N -0.35 -7.24 3.98 -367.74 -1.46 -8.70 16 3 C 0.14 3.44 11.33 84.30 0.96 4.40 16 4 C -0.31 -9.99 6.13 -20.16 -0.12 -10.11 16 5 C 0.53 20.89 7.95 70.20 0.56 21.45 16 6 O -0.55 -23.40 14.49 19.76 0.29 -23.11 16 7 O -0.36 -15.13 10.05 -56.59 -0.57 -15.70 16 8 C 0.09 4.32 5.41 71.98 0.39 4.71 16 9 C 0.03 1.80 5.35 29.85 0.16 1.96 16 10 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 11 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 12 C 0.01 0.44 5.46 84.65 0.46 0.90 16 13 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 14 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 C 0.14 4.16 6.32 43.53 0.27 4.43 16 19 C -0.06 -1.65 3.97 -11.02 -0.04 -1.69 16 20 C -0.12 -2.60 7.63 31.18 0.24 -2.36 16 21 C -0.13 -2.24 8.09 31.18 0.25 -1.99 16 22 C -0.12 -2.70 7.63 31.12 0.24 -2.47 16 23 N -0.31 -7.98 12.12 -46.65 -0.57 -8.54 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.12 0.46 8.14 -2.39 -0.02 0.45 16 27 H 0.22 3.92 8.06 -2.91 -0.02 3.90 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.11 3.39 6.00 -2.38 -0.01 3.38 16 34 H 0.09 1.82 7.79 -2.38 -0.02 1.80 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 Total: -1.00 -72.25 336.15 6.09 -66.15 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.04 Total: 8.96 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.06 Total: -9.82 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.74 Total: -72.19 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.28 Total: -38.81 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.25 6.09 -66.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840640990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.154 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds