Wall clock time and date at job start Tue Mar 31 2020 00:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47117 * 2 1 4 4 C 1.46497 * 120.00371 * 273.36042 * 3 2 1 5 5 C 1.52998 * 109.47145 * 270.83828 * 4 3 2 6 6 O 1.42903 * 109.47227 * 65.00052 * 5 4 3 7 7 N 1.40100 * 119.99716 * 93.36668 * 3 2 1 8 8 C 1.29741 * 120.00476 * 174.68311 * 7 3 2 9 9 C 1.47498 * 120.00226 * 184.51261 * 8 7 3 10 10 C 1.39752 * 120.12602 * 359.97438 * 9 8 7 11 11 C 1.37973 * 119.98150 * 180.02562 * 10 9 8 12 12 C 1.38254 * 120.23101 * 359.71923 * 11 10 9 13 13 C 1.38979 * 120.24570 * 0.55519 * 12 11 10 14 14 O 1.35751 * 119.99464 * 179.71818 * 13 12 11 15 15 C 1.34837 * 117.00277 * 174.34847 * 14 13 12 16 16 H 1.07995 * 119.99819 * 5.06748 * 15 14 13 17 17 C 1.38649 * 120.00198 * 185.07122 * 15 14 13 18 18 N 1.31558 * 120.00254 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48503 * 109.46897 * 210.00255 * 19 17 15 22 22 H 1.48498 * 109.47300 * 330.00037 * 19 17 15 23 23 C 1.38615 * 120.01332 * 359.44850 * 13 12 11 24 24 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46873 * 299.99344 * 1 2 3 26 26 H 1.08996 * 109.47643 * 59.99308 * 1 2 3 27 27 H 1.09008 * 109.46637 * 240.00217 * 2 1 3 28 28 H 1.08999 * 109.47432 * 120.01176 * 2 1 3 29 29 H 1.08998 * 109.46903 * 30.83770 * 4 3 2 30 30 H 1.09000 * 109.46743 * 150.83699 * 4 3 2 31 31 H 1.09007 * 109.47317 * 184.99725 * 5 4 3 32 32 H 1.08995 * 109.47411 * 304.99602 * 5 4 3 33 33 H 0.96702 * 114.00308 * 179.97438 * 6 5 4 34 34 H 1.08005 * 119.99664 * 4.51484 * 8 7 3 35 35 H 1.07996 * 120.00378 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.88319 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.88001 * 180.27516 * 12 11 10 38 38 H 0.96993 * 120.00114 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.11351 * 180.25196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1924 2.0966 -1.2665 5 6 3.6038 1.8487 -1.8024 6 8 3.7542 0.4650 -2.1262 7 7 2.3190 2.0178 1.2112 8 6 2.8482 3.2024 1.2077 9 6 3.2564 3.8316 2.4778 10 6 3.0739 3.1544 3.6865 11 6 3.4563 3.7460 4.8729 12 6 4.0257 5.0058 4.8706 13 6 4.2065 5.6902 3.6746 14 8 4.7609 6.9294 3.6789 15 6 5.0161 7.4900 2.4794 16 1 4.7058 6.9911 1.5732 17 6 5.6770 8.7068 2.4094 18 7 5.9256 9.2540 1.2392 19 14 6.2133 9.5699 3.9769 20 1 7.5836 9.1285 4.3409 21 1 6.2077 11.0389 3.7598 22 1 5.2749 9.2283 5.0760 23 6 3.8259 5.1055 2.4768 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5140 0.8898 29 1 1.4607 1.7375 -1.9901 30 1 2.0481 3.1646 -1.1032 31 1 3.7637 2.4506 -2.6971 32 1 4.3348 2.1257 -1.0429 33 1 4.6270 0.2348 -2.4732 34 1 2.9898 3.7277 0.2747 35 1 2.6328 2.1686 3.6920 36 1 3.3149 3.2210 5.8061 37 1 4.3271 5.4617 5.8021 38 1 6.3883 10.1051 1.1902 39 1 3.9694 5.6342 1.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842534390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:20 Heat of formation + Delta-G solvation = -1.922877 kcal Electronic energy + Delta-G solvation = -20911.747199 eV Core-core repulsion = 17628.619565 eV Total energy + Delta-G solvation = -3283.127635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.17546 -38.28869 -36.79983 -36.11864 -33.69405 -32.35341 -31.21502 -30.20534 -29.03784 -27.38231 -25.20658 -23.62199 -23.29720 -21.47049 -21.12914 -19.05523 -18.07980 -17.72629 -17.04118 -16.58455 -15.93593 -15.16808 -14.83254 -14.52280 -14.18681 -13.87637 -13.83867 -13.75364 -13.61271 -13.23405 -12.73390 -12.32730 -12.24277 -12.18332 -12.04118 -11.87751 -11.57047 -11.08719 -11.07450 -10.86156 -10.79772 -10.66931 -10.31361 -10.20011 -9.65138 -9.41125 -8.88523 -8.55525 -7.49941 -7.13376 -6.41060 -4.08185 1.48568 2.28445 2.76536 3.05126 3.23209 3.26814 3.41376 4.05613 4.24549 4.59692 4.68580 4.87662 4.92753 5.05644 5.11365 5.13423 5.17225 5.29440 5.34202 5.47132 5.51961 5.65704 5.75573 5.76379 5.83882 5.93873 6.09119 6.14655 6.18955 6.41755 6.59936 6.72275 7.12330 7.16440 7.24127 7.33566 7.41161 7.59454 7.78691 8.03935 8.50205 8.94719 9.57405 10.66762 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.003902 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.019066 B = 7173.718250 C = 8181.399547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.161 3.839 3 N -0.538 5.538 4 C 0.101 3.899 5 C 0.055 3.945 6 O -0.569 6.569 7 N -0.225 5.225 8 C 0.066 3.934 9 C -0.003 4.003 10 C -0.168 4.168 11 C -0.085 4.085 12 C -0.182 4.182 13 C 0.156 3.844 14 O -0.219 6.219 15 C -0.390 4.390 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.198 4.198 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.376 0.624 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.279 0.721 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 -15.097 -3.897 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 N -0.352 5.352 4 C -0.025 4.025 5 C -0.025 4.025 6 O -0.374 6.374 7 N -0.029 5.029 8 C -0.144 4.144 9 C -0.006 4.006 10 C -0.189 4.189 11 C -0.103 4.103 12 C -0.202 4.202 13 C 0.104 3.896 14 O -0.125 6.125 15 C -0.465 4.465 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.219 4.219 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.920 -15.646 -3.244 17.413 hybrid contribution 1.060 1.240 -0.584 1.733 sum -5.860 -14.406 -3.829 16.017 Atomic orbital electron populations 1.22296 0.97387 1.01410 1.02050 1.21041 0.92531 0.80091 1.02533 1.50104 1.73683 1.12935 0.98484 1.21653 0.95553 0.98151 0.87143 1.22755 0.98505 0.82632 0.98602 1.86441 1.38261 1.25672 1.87072 1.74349 1.09121 1.10597 1.08861 1.24078 0.99825 0.93087 0.97429 1.18058 0.98602 0.93353 0.90538 1.20840 1.06046 1.00550 0.91488 1.20610 0.97994 0.94295 0.97415 1.20339 1.07677 0.95915 0.96256 1.18912 0.92518 0.85042 0.93079 1.83595 1.70656 1.25038 1.33167 1.20736 1.38184 1.04862 0.82738 0.87704 1.24443 0.95630 0.95837 0.98031 1.69641 1.40224 1.18737 1.23413 0.86192 0.79772 0.78056 0.82954 1.19922 1.20864 1.18320 1.21286 1.05962 0.95609 0.99087 0.92124 0.92428 0.93106 0.90210 0.91014 0.90109 0.89624 0.92978 0.93277 0.77687 0.87475 0.86489 0.86659 0.86483 0.91115 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.16 1.84 6.55 -4.04 -0.03 1.82 16 3 N -0.54 -7.23 3.42 -114.38 -0.39 -7.62 16 4 C 0.10 1.17 5.51 -4.04 -0.02 1.14 16 5 C 0.05 0.58 7.39 37.16 0.27 0.86 16 6 O -0.57 -5.86 12.36 -35.23 -0.44 -6.29 16 7 N -0.23 -3.58 10.61 32.16 0.34 -3.24 16 8 C 0.07 1.09 10.14 -14.66 -0.15 0.94 16 9 C 0.00 -0.06 5.87 -105.07 -0.62 -0.67 16 10 C -0.17 -2.96 9.58 -39.11 -0.37 -3.34 16 11 C -0.08 -1.45 10.02 -39.67 -0.40 -1.85 16 12 C -0.18 -3.55 9.98 -39.30 -0.39 -3.94 16 13 C 0.16 3.54 6.64 -39.17 -0.26 3.28 16 14 O -0.22 -5.69 8.58 0.03 0.00 -5.69 16 15 C -0.39 -10.77 9.94 30.88 0.31 -10.47 16 16 H 0.11 2.94 5.43 -52.49 -0.29 2.65 16 17 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 18 N -0.88 -25.12 13.96 55.48 0.77 -24.34 16 19 Si 0.90 21.45 28.62 -169.99 -4.86 16.59 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.20 -4.18 8.91 -38.96 -0.35 -4.53 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.87 6.99 -51.92 -0.36 0.50 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.09 0.98 6.31 -51.93 -0.33 0.65 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.38 2.39 9.12 45.56 0.42 2.80 16 34 H 0.11 1.63 5.97 -52.48 -0.31 1.32 16 35 H 0.12 1.92 7.55 -52.49 -0.40 1.52 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.14 2.95 5.63 -52.49 -0.30 2.65 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -30.65 333.49 -5.77 -36.42 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.50 Total: 5.59 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.72 Total: -16.44 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.72 Total: -35.20 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.44 Total: -11.98 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.65 -5.77 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842534390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.502 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds