Wall clock time and date at job start Tue Mar 31 2020 00:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47117 * 2 1 4 4 C 1.46497 * 120.00371 * 273.36042 * 3 2 1 5 5 C 1.52998 * 109.47145 * 270.83828 * 4 3 2 6 6 O 1.42903 * 109.47227 * 65.00052 * 5 4 3 7 7 N 1.40100 * 119.99716 * 93.36668 * 3 2 1 8 8 C 1.29741 * 120.00476 * 174.68311 * 7 3 2 9 9 C 1.47498 * 120.00226 * 184.51261 * 8 7 3 10 10 C 1.39752 * 120.12602 * 359.97438 * 9 8 7 11 11 C 1.37973 * 119.98150 * 180.02562 * 10 9 8 12 12 C 1.38254 * 120.23101 * 359.71923 * 11 10 9 13 13 C 1.38979 * 120.24570 * 0.55519 * 12 11 10 14 14 O 1.35751 * 119.99464 * 179.71818 * 13 12 11 15 15 C 1.34837 * 117.00277 * 174.34847 * 14 13 12 16 16 H 1.07995 * 119.99819 * 5.06748 * 15 14 13 17 17 C 1.38649 * 120.00198 * 185.07122 * 15 14 13 18 18 N 1.31558 * 120.00254 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46866 * 90.00390 * 19 17 15 21 21 H 1.48503 * 109.46897 * 210.00255 * 19 17 15 22 22 H 1.48498 * 109.47300 * 330.00037 * 19 17 15 23 23 C 1.38615 * 120.01332 * 359.44850 * 13 12 11 24 24 H 1.09000 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46873 * 299.99344 * 1 2 3 26 26 H 1.08996 * 109.47643 * 59.99308 * 1 2 3 27 27 H 1.09008 * 109.46637 * 240.00217 * 2 1 3 28 28 H 1.08999 * 109.47432 * 120.01176 * 2 1 3 29 29 H 1.08998 * 109.46903 * 30.83770 * 4 3 2 30 30 H 1.09000 * 109.46743 * 150.83699 * 4 3 2 31 31 H 1.09007 * 109.47317 * 184.99725 * 5 4 3 32 32 H 1.08995 * 109.47411 * 304.99602 * 5 4 3 33 33 H 0.96702 * 114.00308 * 179.97438 * 6 5 4 34 34 H 1.08005 * 119.99664 * 4.51484 * 8 7 3 35 35 H 1.07996 * 120.00378 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.88319 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.88001 * 180.27516 * 12 11 10 38 38 H 0.96993 * 120.00114 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.11351 * 180.25196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1924 2.0966 -1.2665 5 6 3.6038 1.8487 -1.8024 6 8 3.7542 0.4650 -2.1262 7 7 2.3190 2.0178 1.2112 8 6 2.8482 3.2024 1.2077 9 6 3.2564 3.8316 2.4778 10 6 3.0739 3.1544 3.6865 11 6 3.4563 3.7460 4.8729 12 6 4.0257 5.0058 4.8706 13 6 4.2065 5.6902 3.6746 14 8 4.7609 6.9294 3.6789 15 6 5.0161 7.4900 2.4794 16 1 4.7058 6.9911 1.5732 17 6 5.6770 8.7068 2.4094 18 7 5.9256 9.2540 1.2392 19 14 6.2133 9.5699 3.9769 20 1 7.5836 9.1285 4.3409 21 1 6.2077 11.0389 3.7598 22 1 5.2749 9.2283 5.0760 23 6 3.8259 5.1055 2.4768 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5140 0.8898 29 1 1.4607 1.7375 -1.9901 30 1 2.0481 3.1646 -1.1032 31 1 3.7637 2.4506 -2.6971 32 1 4.3348 2.1257 -1.0429 33 1 4.6270 0.2348 -2.4732 34 1 2.9898 3.7277 0.2747 35 1 2.6328 2.1686 3.6920 36 1 3.3149 3.2210 5.8061 37 1 4.3271 5.4617 5.8021 38 1 6.3883 10.1051 1.1902 39 1 3.9694 5.6342 1.5461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842534390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:18 Heat of formation + Delta-G solvation = -22.650812 kcal Electronic energy + Delta-G solvation = -20912.646030 eV Core-core repulsion = 17628.619565 eV Total energy + Delta-G solvation = -3284.026466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.83292 -39.40631 -38.28460 -37.16294 -34.90424 -34.33725 -32.27195 -31.50504 -30.60955 -28.51231 -27.13280 -24.88554 -24.22983 -23.08606 -22.38836 -20.41126 -19.76518 -18.81895 -18.60993 -17.68373 -17.04797 -16.79653 -16.37360 -15.74127 -15.61948 -15.52412 -15.17805 -15.04029 -14.67265 -14.38185 -14.13202 -14.05022 -13.95256 -13.45490 -13.06614 -12.91164 -12.72911 -12.50499 -12.46637 -12.36400 -12.11948 -11.97080 -11.92204 -11.40013 -11.21704 -10.87610 -10.75102 -9.94151 -9.14076 -8.46211 -8.39168 -6.18603 0.03452 0.72134 1.34838 1.38138 1.55114 1.60112 1.74247 2.31566 2.85513 3.11482 3.23794 3.28566 3.60326 3.92388 4.03731 4.15588 4.22176 4.31457 4.35663 4.42171 4.46199 4.47179 4.62135 4.63554 4.69902 4.78316 4.88429 4.95589 5.00428 5.19774 5.23801 5.34608 5.45144 5.67530 5.77125 5.82907 5.93052 6.20978 6.25397 6.78696 6.88698 7.28169 7.63163 8.65269 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.003902 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.019066 B = 7173.718250 C = 8181.399547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 N -0.535 5.535 4 C 0.095 3.905 5 C 0.061 3.939 6 O -0.579 6.579 7 N -0.222 5.222 8 C 0.045 3.955 9 C -0.001 4.001 10 C -0.158 4.158 11 C -0.070 4.070 12 C -0.183 4.183 13 C 0.121 3.879 14 O -0.244 6.244 15 C -0.398 4.398 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.214 4.214 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.394 0.606 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.284 0.716 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -17.410 -2.924 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 N -0.350 5.350 4 C -0.031 4.031 5 C -0.019 4.019 6 O -0.387 6.387 7 N -0.028 5.028 8 C -0.164 4.164 9 C -0.004 4.004 10 C -0.179 4.179 11 C -0.088 4.088 12 C -0.203 4.203 13 C 0.072 3.928 14 O -0.152 6.152 15 C -0.474 4.474 16 H 0.100 0.900 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.186 1.186 23 C -0.235 4.235 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.243 0.757 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.093 0.907 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.792 -18.007 -2.282 19.753 hybrid contribution 1.154 1.537 -0.972 2.153 sum -6.638 -16.470 -3.254 18.053 Atomic orbital electron populations 1.22213 0.96035 1.02718 1.01341 1.21236 0.93556 0.78927 1.02872 1.50403 1.72748 1.13536 0.98344 1.21832 0.96710 0.97974 0.86572 1.22617 0.97185 0.83306 0.98798 1.86384 1.39896 1.25205 1.87219 1.74182 1.07632 1.10017 1.10950 1.23815 1.01973 0.93777 0.96873 1.18219 0.97547 0.92329 0.92259 1.21200 1.04512 1.01008 0.91145 1.21078 0.95595 0.93063 0.99062 1.20665 1.07393 0.96649 0.95621 1.19453 0.93617 0.84793 0.94892 1.83537 1.72883 1.26924 1.31851 1.20710 1.38367 1.05263 0.83067 0.89958 1.25234 0.95850 0.96494 1.01136 1.69723 1.41932 1.19607 1.25241 0.85249 0.79320 0.77472 0.78901 1.19155 1.19445 1.18578 1.21219 1.07377 0.96871 0.98070 0.89856 0.93991 0.92870 0.89201 0.91306 0.88365 0.89936 0.91035 0.95351 0.75666 0.87013 0.84487 0.82158 0.84913 0.90683 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.24 71.98 0.74 -2.13 16 2 C 0.16 3.20 6.55 86.38 0.57 3.77 16 3 N -0.54 -13.51 3.42 -515.80 -1.77 -15.27 16 4 C 0.09 2.05 5.51 86.38 0.48 2.52 16 5 C 0.06 1.22 7.39 71.98 0.53 1.75 16 6 O -0.58 -10.72 12.36 -148.98 -1.84 -12.57 16 7 N -0.22 -6.76 10.61 -52.16 -0.55 -7.32 16 8 C 0.05 1.49 10.14 87.44 0.89 2.38 16 9 C 0.00 -0.04 5.87 -20.16 -0.12 -0.16 16 10 C -0.16 -5.18 9.58 22.57 0.22 -4.96 16 11 C -0.07 -2.17 10.02 22.21 0.22 -1.95 16 12 C -0.18 -6.90 9.98 22.45 0.22 -6.68 16 13 C 0.12 5.63 6.64 22.54 0.15 5.78 16 14 O -0.24 -13.12 8.58 -22.82 -0.20 -13.31 16 15 C -0.40 -23.16 9.94 67.92 0.68 -22.48 16 16 H 0.08 4.99 5.43 -2.91 -0.02 4.97 16 17 C 0.01 0.63 5.49 84.83 0.47 1.10 16 18 N -0.92 -54.66 13.96 21.61 0.30 -54.36 16 19 Si 0.97 45.06 28.62 68.60 1.96 47.02 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 23 C -0.21 -9.42 8.91 22.67 0.20 -9.22 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.71 6.99 -2.38 -0.02 1.69 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.08 1.84 6.31 -2.39 -0.02 1.83 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.39 4.21 9.12 -74.06 -0.68 3.53 16 34 H 0.11 3.51 5.97 -2.91 -0.02 3.49 16 35 H 0.14 4.00 7.55 -2.91 -0.02 3.98 16 36 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.11 5.43 5.63 -2.91 -0.02 5.41 16 Total: -1.00 -67.91 333.49 3.53 -64.37 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.39 Total: 21.71 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 5.24 Total: -30.29 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.02 Total: -76.94 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -2.04 Total: -25.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.96 Total: 47.02 kcal Total: -67.91 3.53 -64.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842534390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.722 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds