Wall clock time and date at job start Tue Mar 31 2020 00:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47208 * 2 1 4 4 C 1.46499 * 120.00099 * 273.38848 * 3 2 1 5 5 C 1.53006 * 109.46712 * 270.84201 * 4 3 2 6 6 O 1.42902 * 109.46970 * 65.00162 * 5 4 3 7 7 N 1.40103 * 119.99640 * 93.38354 * 3 2 1 8 8 C 1.29804 * 119.99641 * 174.68276 * 7 3 2 9 9 C 1.47396 * 119.99501 * 184.51254 * 8 7 3 10 10 C 1.39798 * 120.08279 * 180.02562 * 9 8 7 11 11 C 1.37732 * 119.90989 * 180.02562 * 10 9 8 12 12 C 1.39067 * 120.08857 * 0.02562 * 11 10 9 13 13 O 1.35663 * 119.91290 * 179.97438 * 12 11 10 14 14 C 1.34817 * 117.00210 * 5.38155 * 13 12 11 15 15 H 1.07994 * 119.99420 * 354.93671 * 14 13 12 16 16 C 1.38610 * 120.00080 * 174.93091 * 14 13 12 17 17 N 1.31583 * 120.00289 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47275 * 90.00019 * 18 16 14 20 20 H 1.48500 * 109.47536 * 210.00365 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00014 * 18 16 14 22 22 C 1.39070 * 120.17404 * 0.23575 * 12 11 10 23 23 C 1.37735 * 120.08410 * 359.48585 * 22 12 11 24 24 H 1.09001 * 109.47624 * 59.99595 * 1 2 3 25 25 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 299.99719 * 1 2 3 27 27 H 1.09001 * 109.46980 * 240.00281 * 2 1 3 28 28 H 1.08998 * 109.47134 * 120.00272 * 2 1 3 29 29 H 1.08991 * 109.47520 * 30.84176 * 4 3 2 30 30 H 1.08995 * 109.46858 * 150.85069 * 4 3 2 31 31 H 1.09000 * 109.47193 * 184.99796 * 5 4 3 32 32 H 1.08995 * 109.47200 * 305.00370 * 5 4 3 33 33 H 0.96696 * 114.00145 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.00523 * 4.51063 * 8 7 3 35 35 H 1.07997 * 120.04142 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.95670 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00375 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.95974 * 179.74692 * 22 12 11 39 39 H 1.08005 * 120.04374 * 180.22952 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1918 2.0969 -1.2665 5 6 3.6030 1.8489 -1.8032 6 8 3.7531 0.4652 -2.1271 7 7 2.3193 2.0178 1.2113 8 6 2.8488 3.2029 1.2075 9 6 3.2571 3.8315 2.4766 10 6 3.8271 5.1081 2.4748 11 6 4.2078 5.6919 3.6627 12 6 4.0264 5.0131 4.8628 13 8 4.4032 5.5913 6.0308 14 6 4.8418 6.8647 5.9699 15 1 4.9586 7.3502 5.0123 16 6 5.1427 7.5507 7.1361 17 7 5.0007 6.9589 8.3028 18 14 5.7497 9.3152 7.0518 19 1 4.5895 10.2407 7.1009 20 1 6.6476 9.5855 8.2033 21 1 6.4947 9.5223 5.7840 22 6 3.4648 3.7409 4.8683 23 6 3.0762 3.1526 3.6851 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.4598 1.7380 -1.9899 30 1 2.0478 3.1648 -1.1030 31 1 3.7626 2.4508 -2.6978 32 1 4.3344 2.1256 -1.0438 33 1 4.6259 0.2348 -2.4737 34 1 2.9902 3.7283 0.2746 35 1 3.9694 5.6353 1.5431 36 1 4.6485 6.6778 3.6621 37 1 5.2116 7.4388 9.1190 38 1 3.3293 3.2152 5.8020 39 1 2.6367 2.1660 3.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842534767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:23 Heat of formation + Delta-G solvation = -4.680248 kcal Electronic energy + Delta-G solvation = -20601.122409 eV Core-core repulsion = 17317.875205 eV Total energy + Delta-G solvation = -3283.247203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.03365 -38.25683 -36.77540 -36.05682 -33.48960 -32.29789 -31.07215 -30.23528 -29.22304 -27.04472 -25.46875 -23.41292 -22.97828 -21.94820 -20.85104 -19.10262 -18.08021 -17.86422 -17.00533 -16.56341 -16.10461 -14.98285 -14.55464 -14.42544 -14.19841 -14.16662 -13.75205 -13.65726 -13.40445 -13.22756 -12.73673 -12.45417 -12.18085 -12.09332 -11.87087 -11.71720 -11.58491 -11.15338 -11.06403 -10.97057 -10.69516 -10.61572 -10.45796 -10.35368 -9.55839 -9.33321 -8.90787 -8.19811 -7.96379 -6.76728 -6.50084 -4.07084 1.71856 2.27664 2.85894 3.05247 3.11182 3.16205 3.23585 3.93109 4.00146 4.66510 4.72781 4.88920 5.04481 5.06849 5.07366 5.17947 5.27449 5.29255 5.36756 5.46817 5.54767 5.63705 5.71077 5.79055 5.85871 5.99362 6.18197 6.21176 6.30935 6.54641 6.71142 6.90757 7.05536 7.22792 7.31458 7.35513 7.38486 7.43788 7.80266 7.95255 8.64729 8.95216 9.64877 10.67438 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.003000 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.503085 B = 9332.595527 C = 9824.770607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.163 3.837 3 N -0.543 5.543 4 C 0.104 3.896 5 C 0.055 3.945 6 O -0.568 6.568 7 N -0.247 5.247 8 C 0.088 3.912 9 C -0.149 4.149 10 C -0.047 4.047 11 C -0.238 4.238 12 C 0.163 3.837 13 O -0.172 6.172 14 C -0.392 4.392 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.198 4.198 23 C -0.037 4.037 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.376 0.624 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.271 0.729 38 H 0.118 0.882 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -8.114 -18.376 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.040 3.960 3 N -0.357 5.357 4 C -0.023 4.023 5 C -0.024 4.024 6 O -0.373 6.373 7 N -0.052 5.052 8 C -0.121 4.121 9 C -0.153 4.153 10 C -0.067 4.067 11 C -0.258 4.258 12 C 0.107 3.893 13 O -0.074 6.074 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.218 4.218 23 C -0.058 4.058 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.456 -9.019 -17.256 19.974 hybrid contribution 1.086 1.690 -1.020 2.253 sum -3.370 -7.329 -18.276 19.977 Atomic orbital electron populations 1.22297 0.97565 1.01316 1.01945 1.20985 0.92404 0.80293 1.02343 1.50003 1.74459 1.12885 0.98379 1.21574 0.95259 0.97932 0.87500 1.22770 0.98791 0.82653 0.98215 1.86465 1.38138 1.25636 1.87043 1.74434 1.11520 1.10954 1.08274 1.23925 0.98605 0.92799 0.96813 1.17851 1.10731 0.96060 0.90622 1.20753 0.95825 0.93193 0.96975 1.21036 1.10198 1.02584 0.91935 1.19543 0.90964 0.92240 0.86546 1.83952 1.69510 1.27839 1.26093 1.21375 1.44385 0.86214 0.94820 0.88827 1.25321 0.96956 1.00119 0.94137 1.70051 1.44394 1.37305 0.97586 0.85690 0.78785 0.80366 0.78478 1.19809 1.20224 1.19119 1.20184 1.07916 0.95294 0.98399 1.20816 0.95858 0.98340 0.90747 0.93279 0.92233 0.92399 0.90494 0.91076 0.90414 0.89994 0.93392 0.93433 0.77789 0.88424 0.87260 0.85295 0.91891 0.86356 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.16 1.88 6.55 -4.04 -0.03 1.86 16 3 N -0.54 -7.12 3.42 -114.38 -0.39 -7.52 16 4 C 0.10 1.09 5.51 -4.04 -0.02 1.07 16 5 C 0.06 0.52 7.39 37.16 0.27 0.79 16 6 O -0.57 -5.41 12.35 -35.23 -0.44 -5.84 16 7 N -0.25 -3.89 10.61 32.15 0.34 -3.55 16 8 C 0.09 1.35 10.14 -14.68 -0.15 1.21 16 9 C -0.15 -2.66 5.87 -105.01 -0.62 -3.27 16 10 C -0.05 -0.83 9.78 -39.18 -0.38 -1.22 16 11 C -0.24 -5.03 9.15 -39.46 -0.36 -5.39 16 12 C 0.16 3.89 6.65 -38.97 -0.26 3.63 16 13 O -0.17 -4.85 9.75 0.36 0.00 -4.84 16 14 C -0.39 -10.73 9.48 30.87 0.29 -10.44 16 15 H 0.09 2.35 5.18 -52.49 -0.27 2.08 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 18 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.20 -4.25 9.97 -39.46 -0.39 -4.64 16 23 C -0.04 -0.71 9.57 -39.18 -0.37 -1.08 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.84 6.99 -51.93 -0.36 0.47 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.08 0.82 6.31 -51.93 -0.33 0.49 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.38 2.05 9.12 45.56 0.42 2.47 16 34 H 0.10 1.27 5.98 -52.49 -0.31 0.96 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.12 2.13 7.55 -52.48 -0.40 1.74 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -31.62 334.56 -5.93 -37.55 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.49 Total: 6.09 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.73 Total: -17.90 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.71 Total: -35.17 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.43 Total: -10.68 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -5.93 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842534767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.867 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds