Wall clock time and date at job start Tue Mar 31 2020 00:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47208 * 2 1 4 4 C 1.46499 * 120.00099 * 273.38848 * 3 2 1 5 5 C 1.53006 * 109.46712 * 270.84201 * 4 3 2 6 6 O 1.42902 * 109.46970 * 65.00162 * 5 4 3 7 7 N 1.40103 * 119.99640 * 93.38354 * 3 2 1 8 8 C 1.29804 * 119.99641 * 174.68276 * 7 3 2 9 9 C 1.47396 * 119.99501 * 184.51254 * 8 7 3 10 10 C 1.39798 * 120.08279 * 180.02562 * 9 8 7 11 11 C 1.37732 * 119.90989 * 180.02562 * 10 9 8 12 12 C 1.39067 * 120.08857 * 0.02562 * 11 10 9 13 13 O 1.35663 * 119.91290 * 179.97438 * 12 11 10 14 14 C 1.34817 * 117.00210 * 5.38155 * 13 12 11 15 15 H 1.07994 * 119.99420 * 354.93671 * 14 13 12 16 16 C 1.38610 * 120.00080 * 174.93091 * 14 13 12 17 17 N 1.31583 * 120.00289 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00118 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47275 * 90.00019 * 18 16 14 20 20 H 1.48500 * 109.47536 * 210.00365 * 18 16 14 21 21 H 1.48501 * 109.46991 * 330.00014 * 18 16 14 22 22 C 1.39070 * 120.17404 * 0.23575 * 12 11 10 23 23 C 1.37735 * 120.08410 * 359.48585 * 22 12 11 24 24 H 1.09001 * 109.47624 * 59.99595 * 1 2 3 25 25 H 1.08999 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 299.99719 * 1 2 3 27 27 H 1.09001 * 109.46980 * 240.00281 * 2 1 3 28 28 H 1.08998 * 109.47134 * 120.00272 * 2 1 3 29 29 H 1.08991 * 109.47520 * 30.84176 * 4 3 2 30 30 H 1.08995 * 109.46858 * 150.85069 * 4 3 2 31 31 H 1.09000 * 109.47193 * 184.99796 * 5 4 3 32 32 H 1.08995 * 109.47200 * 305.00370 * 5 4 3 33 33 H 0.96696 * 114.00145 * 180.02562 * 6 5 4 34 34 H 1.07997 * 120.00523 * 4.51063 * 8 7 3 35 35 H 1.07997 * 120.04142 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.95670 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00375 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.95974 * 179.74692 * 22 12 11 39 39 H 1.08005 * 120.04374 * 180.22952 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1918 2.0969 -1.2665 5 6 3.6030 1.8489 -1.8032 6 8 3.7531 0.4652 -2.1271 7 7 2.3193 2.0178 1.2113 8 6 2.8488 3.2029 1.2075 9 6 3.2571 3.8315 2.4766 10 6 3.8271 5.1081 2.4748 11 6 4.2078 5.6919 3.6627 12 6 4.0264 5.0131 4.8628 13 8 4.4032 5.5913 6.0308 14 6 4.8418 6.8647 5.9699 15 1 4.9586 7.3502 5.0123 16 6 5.1427 7.5507 7.1361 17 7 5.0007 6.9589 8.3028 18 14 5.7497 9.3152 7.0518 19 1 4.5895 10.2407 7.1009 20 1 6.6476 9.5855 8.2033 21 1 6.4947 9.5223 5.7840 22 6 3.4648 3.7409 4.8683 23 6 3.0762 3.1526 3.6851 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.4598 1.7380 -1.9899 30 1 2.0478 3.1648 -1.1030 31 1 3.7626 2.4508 -2.6978 32 1 4.3344 2.1256 -1.0438 33 1 4.6259 0.2348 -2.4737 34 1 2.9902 3.7283 0.2746 35 1 3.9694 5.6353 1.5431 36 1 4.6485 6.6778 3.6621 37 1 5.2116 7.4388 9.1190 38 1 3.3293 3.2152 5.8020 39 1 2.6367 2.1660 3.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842534767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:22 Heat of formation + Delta-G solvation = -26.819984 kcal Electronic energy + Delta-G solvation = -20602.082460 eV Core-core repulsion = 17317.875205 eV Total energy + Delta-G solvation = -3284.207254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73243 -39.30033 -38.22651 -37.05424 -34.72881 -34.13663 -31.98517 -31.85085 -30.57927 -28.21736 -27.32873 -24.41983 -24.11298 -23.55073 -22.17817 -20.43511 -19.66126 -18.83426 -18.65651 -17.59046 -17.20490 -16.33528 -16.19990 -15.90440 -15.52421 -15.38634 -15.05418 -14.91256 -14.59641 -14.44018 -14.14560 -13.94505 -13.52380 -13.41158 -12.97636 -12.90753 -12.72131 -12.53803 -12.38562 -12.35206 -12.10281 -11.98015 -11.90706 -11.21515 -11.08490 -10.78449 -10.59155 -9.79147 -9.36651 -8.45930 -8.15128 -6.12540 0.25116 0.65447 1.38159 1.44940 1.55812 1.74967 1.88999 2.19842 2.92192 3.25890 3.37454 3.51959 3.76277 3.98401 4.14207 4.18502 4.22616 4.28905 4.42727 4.45700 4.49934 4.56680 4.67062 4.67852 4.76016 4.87309 4.92800 4.98750 5.08079 5.12736 5.30270 5.35410 5.39640 5.64539 5.70945 5.83775 6.04281 6.19022 6.32313 6.86328 6.98789 7.50566 7.78944 8.77326 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.003000 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.503085 B = 9332.595527 C = 9824.770607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 N -0.541 5.541 4 C 0.096 3.904 5 C 0.060 3.940 6 O -0.585 6.585 7 N -0.258 5.258 8 C 0.074 3.926 9 C -0.124 4.124 10 C -0.039 4.039 11 C -0.241 4.241 12 C 0.123 3.877 13 O -0.229 6.229 14 C -0.413 4.413 15 H 0.108 0.892 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.249 1.249 22 C -0.208 4.208 23 C -0.041 4.041 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.393 0.607 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.273 0.727 38 H 0.111 0.889 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 -8.126 -22.591 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 N -0.357 5.357 4 C -0.030 4.030 5 C -0.020 4.020 6 O -0.392 6.392 7 N -0.064 5.064 8 C -0.135 4.135 9 C -0.127 4.127 10 C -0.059 4.059 11 C -0.260 4.260 12 C 0.072 3.928 13 O -0.134 6.134 14 C -0.489 4.489 15 H 0.125 0.875 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.172 1.172 22 C -0.228 4.228 23 C -0.061 4.061 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.242 0.758 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.855 -9.074 -21.549 23.880 hybrid contribution 1.022 1.285 -0.119 1.646 sum -3.833 -7.789 -21.668 23.342 Atomic orbital electron populations 1.22209 0.96396 1.02425 1.01252 1.21119 0.93290 0.79645 1.02344 1.50232 1.73676 1.13291 0.98458 1.21835 0.96570 0.98253 0.86312 1.22691 0.97314 0.83060 0.98908 1.86411 1.39785 1.25793 1.87254 1.74276 1.10036 1.11172 1.10873 1.23765 1.00001 0.93230 0.96533 1.18228 1.07494 0.95602 0.91333 1.21131 0.94214 0.93125 0.97459 1.21188 1.10054 1.02593 0.92148 1.20032 0.92653 0.93344 0.86820 1.83926 1.72562 1.28665 1.28284 1.21906 1.44641 0.86599 0.95775 0.87480 1.26632 0.97014 1.05054 0.93420 1.70206 1.47527 1.39658 0.98532 0.84562 0.78448 0.73941 0.79126 1.18866 1.19848 1.17242 1.20334 1.08197 0.94890 0.99362 1.20995 0.95683 0.98955 0.90473 0.92620 0.90342 0.94288 0.89389 0.92152 0.89144 0.89053 0.90697 0.94875 0.75796 0.85250 0.82678 0.85351 0.91837 0.87050 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.24 71.98 0.74 -2.17 16 2 C 0.16 3.24 6.55 86.38 0.57 3.81 16 3 N -0.54 -12.48 3.42 -515.79 -1.77 -14.25 16 4 C 0.10 1.63 5.51 86.38 0.48 2.10 16 5 C 0.06 0.88 7.39 71.98 0.53 1.41 16 6 O -0.58 -9.09 12.35 -148.98 -1.84 -10.93 16 7 N -0.26 -7.37 10.61 -52.21 -0.55 -7.92 16 8 C 0.07 2.02 10.14 87.41 0.89 2.91 16 9 C -0.12 -4.10 5.87 -20.11 -0.12 -4.22 16 10 C -0.04 -1.29 9.78 22.53 0.22 -1.07 16 11 C -0.24 -10.11 9.15 22.35 0.20 -9.91 16 12 C 0.12 6.14 6.65 22.67 0.15 6.30 16 13 O -0.23 -13.74 9.75 -21.64 -0.21 -13.95 16 14 C -0.41 -23.71 9.48 67.91 0.64 -23.06 16 15 H 0.11 5.53 5.18 -2.91 -0.02 5.51 16 16 C -0.02 -1.33 5.49 84.82 0.47 -0.87 16 17 N -0.92 -56.47 13.67 21.61 0.30 -56.18 16 18 Si 1.02 42.12 29.55 68.60 2.03 44.14 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 22 C -0.21 -9.26 9.97 22.35 0.22 -9.04 16 23 C -0.04 -1.53 9.57 22.53 0.22 -1.31 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.64 6.99 -2.39 -0.02 1.63 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.09 1.39 6.31 -2.39 -0.02 1.37 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.39 3.02 9.12 -74.06 -0.68 2.34 16 34 H 0.13 2.71 5.98 -2.91 -0.02 2.69 16 35 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.13 5.34 5.62 -2.91 -0.02 5.32 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.13 4.60 7.55 -2.91 -0.02 4.58 16 Total: -1.00 -73.00 334.56 3.54 -69.45 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.39 Total: 24.74 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 5.20 Total: -35.11 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.02 Total: -78.35 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -2.05 Total: -24.88 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -73.00 3.54 -69.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842534767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.635 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds