Wall clock time and date at job start Mon Mar 30 2020 23:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.46968 * 240.00512 * 2 1 3 5 5 O 1.42899 * 109.46967 * 304.99556 * 4 2 1 6 6 N 1.46492 * 109.47323 * 120.00438 * 2 1 3 7 7 C 1.46499 * 120.00015 * 240.00055 * 6 2 1 8 8 N 1.40099 * 120.00219 * 60.00341 * 6 2 1 9 9 C 1.29808 * 120.00223 * 180.02562 * 8 6 2 10 10 C 1.47395 * 119.99922 * 179.97438 * 9 8 6 11 11 C 1.39793 * 120.08126 * 179.97438 * 10 9 8 12 12 C 1.37739 * 119.90759 * 179.97438 * 11 10 9 13 13 C 1.39069 * 120.08513 * 0.02562 * 12 11 10 14 14 O 1.35673 * 119.90780 * 179.97438 * 13 12 11 15 15 C 1.34812 * 117.00219 * 5.54995 * 14 13 12 16 16 H 1.08003 * 119.99914 * 354.94181 * 15 14 13 17 17 C 1.38614 * 119.99773 * 174.94476 * 15 14 13 18 18 N 1.31586 * 119.99605 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00270 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47265 * 90.00323 * 19 17 15 21 21 H 1.48506 * 109.47197 * 210.00256 * 19 17 15 22 22 H 1.48495 * 109.47105 * 330.00145 * 19 17 15 23 23 C 1.39064 * 120.17694 * 0.23684 * 13 12 11 24 24 C 1.37736 * 120.08624 * 359.48719 * 23 13 12 25 25 H 1.09001 * 109.47182 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46982 * 299.99361 * 1 2 3 28 28 H 1.09001 * 109.47227 * 65.00166 * 4 2 1 29 29 H 1.09003 * 109.47100 * 184.99751 * 4 2 1 30 30 H 0.96708 * 113.99579 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.47158 * 269.99687 * 7 6 2 32 32 H 1.08996 * 109.47167 * 29.99721 * 7 6 2 33 33 H 1.09009 * 109.47405 * 150.00055 * 7 6 2 34 34 H 1.07996 * 119.99953 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.05029 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.95715 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99485 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.95432 * 179.74605 * 23 13 12 39 39 H 1.07991 * 120.04193 * 180.25496 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0184 -0.6907 1.1960 7 6 2.8606 0.0213 2.1604 8 7 1.6800 -2.0320 1.4177 9 6 2.1124 -2.6438 2.4777 10 6 1.7559 -4.0549 2.7111 11 6 2.2210 -4.7156 3.8519 12 6 1.8852 -6.0341 4.0667 13 6 1.0852 -6.7079 3.1502 14 8 0.7571 -8.0068 3.3651 15 6 1.1414 -8.5492 4.5380 16 1 1.7548 -7.9800 5.2209 17 6 0.7495 -9.8373 4.8673 18 7 1.1242 -10.3665 6.0123 19 14 -0.3118 -10.8213 3.6864 20 1 0.5590 -11.5894 2.7608 21 1 -1.1674 -11.7608 4.4551 22 1 -1.1709 -9.8962 2.9046 23 6 0.6251 -6.0557 2.0115 24 6 0.9517 -4.7357 1.7924 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7517 -0.1581 -2.1370 29 1 3.1263 -0.7994 -1.2057 30 1 1.7506 -2.5463 -2.0779 31 1 3.9086 -0.0988 1.8857 32 1 2.6029 1.0803 2.1557 33 1 2.6972 -0.3881 3.1574 34 1 2.7332 -2.1190 3.1887 35 1 2.8427 -4.1931 4.5638 36 1 2.2445 -6.5455 4.9475 37 1 0.8495 -11.2678 6.2429 38 1 0.0074 -6.5837 1.3001 39 1 0.5907 -4.2287 0.9099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842544893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:25 Heat of formation + Delta-G solvation = 4.829012 kcal Electronic energy + Delta-G solvation = -20903.707693 eV Core-core repulsion = 17620.872842 eV Total energy + Delta-G solvation = -3282.834851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.10819 -38.25944 -36.89267 -35.96609 -33.50182 -32.37094 -30.81651 -30.25078 -28.69963 -26.50278 -25.94951 -25.04295 -22.41061 -21.98110 -20.54050 -18.93598 -17.76703 -17.58500 -17.15443 -16.59289 -15.80048 -14.99181 -14.86001 -14.66245 -14.03240 -13.89353 -13.71810 -13.54200 -13.49433 -12.85669 -12.62555 -12.53599 -12.24358 -12.17543 -12.02361 -11.89990 -11.47165 -11.23048 -11.04767 -10.97096 -10.67200 -10.50519 -10.14868 -10.00196 -9.49484 -9.32286 -8.89032 -8.20614 -8.02236 -6.80725 -6.41932 -4.06899 1.74139 2.25801 2.81944 3.15369 3.26351 3.29258 3.42299 4.22702 4.24584 4.62980 4.67245 4.88901 4.90958 4.97737 5.13288 5.15210 5.18268 5.23524 5.37974 5.46222 5.56945 5.60401 5.63014 5.77128 5.86860 5.92969 6.13316 6.24418 6.37426 6.55392 6.66315 6.88619 7.10763 7.28454 7.29597 7.38949 7.65004 7.67813 7.82110 8.04877 8.67889 8.93294 9.56338 10.65413 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.003337 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.901951 B = 8389.186107 C = 8971.048127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.192 3.808 3 H 0.090 0.910 4 C 0.069 3.931 5 O -0.542 6.542 6 N -0.552 5.552 7 C 0.072 3.928 8 N -0.210 5.210 9 C 0.073 3.927 10 C -0.134 4.134 11 C -0.051 4.051 12 C -0.226 4.226 13 C 0.167 3.833 14 O -0.214 6.214 15 C -0.388 4.388 16 H 0.108 0.892 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.258 1.258 23 C -0.199 4.199 24 C -0.038 4.038 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.369 0.631 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.280 0.720 38 H 0.117 0.883 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 19.946 -11.339 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.087 3.913 3 H 0.107 0.893 4 C -0.011 4.011 5 O -0.345 6.345 6 N -0.368 5.368 7 C -0.074 4.074 8 N -0.014 5.014 9 C -0.137 4.137 10 C -0.137 4.137 11 C -0.072 4.072 12 C -0.245 4.245 13 C 0.114 3.886 14 O -0.118 6.118 15 C -0.464 4.464 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.182 1.182 23 C -0.218 4.218 24 C -0.059 4.059 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.214 0.786 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.500 19.907 -11.634 23.106 hybrid contribution 0.649 -0.298 0.038 0.715 sum 2.149 19.609 -11.596 22.882 Atomic orbital electron populations 1.22055 0.94987 1.03848 1.00618 1.20695 0.94763 0.93192 0.82607 0.89257 1.22516 0.96368 0.85372 0.96847 1.86733 1.71823 1.26281 1.49710 1.50035 1.56696 1.06367 1.23716 1.21791 0.94545 0.96914 0.94168 1.74640 1.16296 0.92537 1.17960 1.24006 1.00504 0.94616 0.94583 1.17905 1.06515 0.91055 0.98249 1.20816 0.97286 0.93835 0.95259 1.21149 1.05184 0.95385 1.02778 1.19292 0.92155 0.83879 0.93304 1.83548 1.69697 1.20460 1.38128 1.20801 1.32639 0.99473 0.93476 0.87466 1.24480 0.97099 0.96093 0.96351 1.69663 1.44445 1.16419 1.21087 0.86174 0.80545 0.79669 0.80521 1.19853 1.20814 1.18239 1.20187 1.07607 0.95118 0.98889 1.20882 0.94691 0.92613 0.97677 0.92651 0.90367 0.93172 0.93836 0.94306 0.78604 0.94252 0.91889 0.91827 0.88355 0.87051 0.84763 0.91026 0.86465 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.12 37.16 0.34 -1.31 16 2 C 0.19 1.94 3.32 -67.93 -0.23 1.71 16 3 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 4 C 0.07 0.65 6.85 37.16 0.25 0.91 16 5 O -0.54 -6.31 11.52 -35.23 -0.41 -6.72 16 6 N -0.55 -6.92 3.63 -114.61 -0.42 -7.34 16 7 C 0.07 0.70 10.14 59.85 0.61 1.31 16 8 N -0.21 -3.26 8.91 32.15 0.29 -2.98 16 9 C 0.07 1.14 10.15 -14.68 -0.15 1.00 16 10 C -0.13 -2.40 5.87 -105.01 -0.62 -3.01 16 11 C -0.05 -0.94 9.78 -39.18 -0.38 -1.32 16 12 C -0.23 -4.86 9.15 -39.46 -0.36 -5.22 16 13 C 0.17 3.89 6.65 -38.97 -0.26 3.64 16 14 O -0.21 -5.67 8.58 0.34 0.00 -5.67 16 15 C -0.39 -10.91 9.94 30.87 0.31 -10.60 16 16 H 0.11 3.06 5.42 -52.48 -0.28 2.77 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.29 13.96 55.48 0.77 -24.52 16 19 Si 0.91 21.67 28.61 -169.99 -4.86 16.80 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.26 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.20 -4.08 9.97 -39.46 -0.39 -4.47 16 24 C -0.04 -0.72 9.57 -39.18 -0.37 -1.09 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.37 2.87 9.12 45.56 0.42 3.29 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.06 0.64 6.19 -51.92 -0.32 0.32 16 34 H 0.10 1.34 5.91 -52.49 -0.31 1.03 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.13 3.00 5.62 -52.48 -0.29 2.70 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.13 2.24 7.55 -52.49 -0.40 1.84 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -31.60 330.61 -5.48 -37.08 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.49 Total: 5.15 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.35 Total: -16.79 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.65 Total: -34.83 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.40 Total: -12.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.60 -5.48 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842544893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.908 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds