Wall clock time and date at job start Mon Mar 30 2020 23:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.46968 * 240.00512 * 2 1 3 5 5 O 1.42899 * 109.46967 * 304.99556 * 4 2 1 6 6 N 1.46492 * 109.47323 * 120.00438 * 2 1 3 7 7 C 1.46499 * 120.00015 * 240.00055 * 6 2 1 8 8 N 1.40099 * 120.00219 * 60.00341 * 6 2 1 9 9 C 1.29808 * 120.00223 * 180.02562 * 8 6 2 10 10 C 1.47395 * 119.99922 * 179.97438 * 9 8 6 11 11 C 1.39793 * 120.08126 * 179.97438 * 10 9 8 12 12 C 1.37739 * 119.90759 * 179.97438 * 11 10 9 13 13 C 1.39069 * 120.08513 * 0.02562 * 12 11 10 14 14 O 1.35673 * 119.90780 * 179.97438 * 13 12 11 15 15 C 1.34812 * 117.00219 * 5.54995 * 14 13 12 16 16 H 1.08003 * 119.99914 * 354.94181 * 15 14 13 17 17 C 1.38614 * 119.99773 * 174.94476 * 15 14 13 18 18 N 1.31586 * 119.99605 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00270 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47265 * 90.00323 * 19 17 15 21 21 H 1.48506 * 109.47197 * 210.00256 * 19 17 15 22 22 H 1.48495 * 109.47105 * 330.00145 * 19 17 15 23 23 C 1.39064 * 120.17694 * 0.23684 * 13 12 11 24 24 C 1.37736 * 120.08624 * 359.48719 * 23 13 12 25 25 H 1.09001 * 109.47182 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.46735 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46982 * 299.99361 * 1 2 3 28 28 H 1.09001 * 109.47227 * 65.00166 * 4 2 1 29 29 H 1.09003 * 109.47100 * 184.99751 * 4 2 1 30 30 H 0.96708 * 113.99579 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.47158 * 269.99687 * 7 6 2 32 32 H 1.08996 * 109.47167 * 29.99721 * 7 6 2 33 33 H 1.09009 * 109.47405 * 150.00055 * 7 6 2 34 34 H 1.07996 * 119.99953 * 359.97438 * 9 8 6 35 35 H 1.08001 * 120.05029 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.95715 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99485 * 179.97438 * 18 17 15 38 38 H 1.07998 * 119.95432 * 179.74605 * 23 13 12 39 39 H 1.07991 * 120.04193 * 180.25496 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3095 6 7 2.0184 -0.6907 1.1960 7 6 2.8606 0.0213 2.1604 8 7 1.6800 -2.0320 1.4177 9 6 2.1124 -2.6438 2.4777 10 6 1.7559 -4.0549 2.7111 11 6 2.2210 -4.7156 3.8519 12 6 1.8852 -6.0341 4.0667 13 6 1.0852 -6.7079 3.1502 14 8 0.7571 -8.0068 3.3651 15 6 1.1414 -8.5492 4.5380 16 1 1.7548 -7.9800 5.2209 17 6 0.7495 -9.8373 4.8673 18 7 1.1242 -10.3665 6.0123 19 14 -0.3118 -10.8213 3.6864 20 1 0.5590 -11.5894 2.7608 21 1 -1.1674 -11.7608 4.4551 22 1 -1.1709 -9.8962 2.9046 23 6 0.6251 -6.0557 2.0115 24 6 0.9517 -4.7357 1.7924 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7517 -0.1581 -2.1370 29 1 3.1263 -0.7994 -1.2057 30 1 1.7506 -2.5463 -2.0779 31 1 3.9086 -0.0988 1.8857 32 1 2.6029 1.0803 2.1557 33 1 2.6972 -0.3881 3.1574 34 1 2.7332 -2.1190 3.1887 35 1 2.8427 -4.1931 4.5638 36 1 2.2445 -6.5455 4.9475 37 1 0.8495 -11.2678 6.2429 38 1 0.0074 -6.5837 1.3001 39 1 0.5907 -4.2287 0.9099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842544893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:25 Heat of formation + Delta-G solvation = -17.017743 kcal Electronic energy + Delta-G solvation = -20904.655039 eV Core-core repulsion = 17620.872842 eV Total energy + Delta-G solvation = -3283.782197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82517 -39.25760 -38.36454 -37.04076 -34.67564 -34.29208 -31.91196 -31.83172 -30.06623 -27.56842 -27.25769 -26.42020 -23.73518 -23.59893 -21.75947 -20.32288 -19.48957 -18.97060 -18.36175 -17.68541 -16.87930 -16.42961 -16.13088 -15.82610 -15.69220 -15.49401 -15.28861 -14.77263 -14.41003 -14.30538 -14.07279 -14.04633 -13.54584 -13.44792 -13.28350 -12.81110 -12.72015 -12.64862 -12.45616 -12.21184 -12.15229 -11.93946 -11.73470 -11.26088 -10.87774 -10.78905 -10.56422 -9.79603 -9.40846 -8.48227 -8.14857 -6.19030 0.26054 0.64091 1.33713 1.36658 1.54061 1.81939 1.87658 2.30287 2.85497 3.10564 3.26148 3.54742 3.79027 4.00929 4.10816 4.20606 4.22311 4.27869 4.44861 4.54156 4.57057 4.61821 4.65796 4.75300 4.79249 4.86048 4.90786 4.98463 5.02230 5.16065 5.32216 5.44246 5.56011 5.64703 5.78957 5.86980 5.91880 6.24428 6.35644 6.86287 7.05131 7.55104 7.60773 8.63101 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.003337 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.901951 B = 8389.186107 C = 8971.048127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.179 3.821 3 H 0.125 0.875 4 C 0.067 3.933 5 O -0.571 6.571 6 N -0.551 5.551 7 C 0.065 3.935 8 N -0.213 5.213 9 C 0.048 3.952 10 C -0.107 4.107 11 C -0.049 4.049 12 C -0.234 4.234 13 C 0.128 3.872 14 O -0.243 6.243 15 C -0.399 4.399 16 H 0.086 0.914 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.194 4.194 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.382 0.618 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.285 0.715 38 H 0.127 0.873 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 23.301 -13.335 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.076 3.924 3 H 0.143 0.857 4 C -0.012 4.012 5 O -0.377 6.377 6 N -0.367 5.367 7 C -0.080 4.080 8 N -0.019 5.019 9 C -0.162 4.162 10 C -0.110 4.110 11 C -0.070 4.070 12 C -0.254 4.254 13 C 0.078 3.922 14 O -0.149 6.149 15 C -0.475 4.475 16 H 0.103 0.897 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.188 1.188 23 C -0.213 4.213 24 C -0.061 4.061 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.230 0.770 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.727 23.316 -13.657 27.077 hybrid contribution 0.669 -0.786 0.449 1.125 sum 2.395 22.530 -13.208 26.226 Atomic orbital electron populations 1.21983 0.95446 1.01877 1.01627 1.21122 0.94485 0.94818 0.82003 0.85696 1.22611 0.96096 0.84849 0.97683 1.86683 1.72470 1.27567 1.50963 1.50365 1.56359 1.05171 1.24834 1.21997 0.94514 0.98168 0.93276 1.74472 1.15163 0.94687 1.17552 1.23806 1.02732 0.93574 0.96042 1.18243 1.03636 0.92339 0.96810 1.21086 0.97264 0.92483 0.96138 1.21191 1.05302 0.96807 1.02069 1.19747 0.93900 0.83590 0.95006 1.83495 1.71763 1.22174 1.37506 1.20758 1.32728 0.99873 0.94134 0.89683 1.25254 0.98475 0.97014 0.97986 1.69741 1.46538 1.17203 1.22803 0.85245 0.78965 0.78193 0.78523 1.19040 1.19247 1.18774 1.20389 1.07135 0.95804 0.98007 1.21053 0.94815 0.91824 0.98391 0.90455 0.93713 0.93429 0.91081 0.94526 0.77035 0.93395 0.89091 0.92025 0.85968 0.83569 0.86544 0.90576 0.85523 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.12 71.98 0.66 -2.07 16 2 C 0.18 2.91 3.32 44.99 0.15 3.06 16 3 H 0.13 1.18 7.79 -2.39 -0.02 1.16 16 4 C 0.07 1.03 6.85 71.98 0.49 1.53 16 5 O -0.57 -11.97 11.52 -148.98 -1.72 -13.68 16 6 N -0.55 -11.78 3.63 -516.51 -1.87 -13.65 16 7 C 0.07 1.00 10.14 127.77 1.30 2.30 16 8 N -0.21 -6.01 8.91 -52.21 -0.47 -6.48 16 9 C 0.05 1.38 10.15 87.40 0.89 2.26 16 10 C -0.11 -3.65 5.87 -20.11 -0.12 -3.77 16 11 C -0.05 -1.75 9.78 22.53 0.22 -1.53 16 12 C -0.23 -10.38 9.15 22.35 0.20 -10.18 16 13 C 0.13 6.14 6.65 22.67 0.15 6.29 16 14 O -0.24 -13.38 8.58 -21.71 -0.19 -13.57 16 15 C -0.40 -23.62 9.94 67.91 0.67 -22.94 16 16 H 0.09 5.22 5.42 -2.91 -0.02 5.21 16 17 C 0.01 0.65 5.49 84.82 0.47 1.12 16 18 N -0.92 -55.26 13.96 21.61 0.30 -54.96 16 19 Si 0.97 45.88 28.61 68.60 1.96 47.84 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.19 -7.99 9.97 22.35 0.22 -7.77 16 24 C -0.04 -1.47 9.57 22.53 0.22 -1.25 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 1.12 7.42 -2.39 -0.02 1.10 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.38 5.22 9.12 -74.05 -0.68 4.54 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.92 7.92 -2.39 -0.02 0.90 16 33 H 0.06 1.00 6.19 -2.38 -0.01 0.98 16 34 H 0.12 2.89 5.91 -2.91 -0.02 2.87 16 35 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.12 5.54 5.62 -2.91 -0.02 5.53 16 37 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 38 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 39 H 0.14 4.70 7.55 -2.92 -0.02 4.68 16 Total: -1.00 -71.15 330.61 3.93 -67.21 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.39 Total: 20.24 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 5.52 Total: -32.95 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -2.04 Total: -75.09 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.90 Total: -27.25 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.96 Total: 47.84 kcal Total: -71.15 3.93 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842544893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.197 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds