Wall clock time and date at job start Mon Mar 30 2020 23:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47171 * 2 1 4 4 C 1.34947 * 126.03583 * 124.97615 * 3 2 1 5 5 C 1.35323 * 107.74601 * 179.75296 * 4 3 2 6 6 C 1.39873 * 107.91652 * 0.39480 * 5 4 3 7 7 C 1.50701 * 125.89599 * 179.86352 * 6 5 4 8 8 C 1.50700 * 109.47177 * 124.71219 * 7 6 5 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00368 * 179.97438 * 8 7 6 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 N 1.30837 * 108.20456 * 359.59964 * 6 5 4 24 24 H 1.08998 * 109.47242 * 299.99270 * 1 2 3 25 25 H 1.09002 * 109.47221 * 59.99860 * 1 2 3 26 26 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47571 * 240.00124 * 2 1 3 28 28 H 1.09002 * 109.47690 * 119.99892 * 2 1 3 29 29 H 1.08002 * 126.13355 * 359.97438 * 4 3 2 30 30 H 1.08003 * 126.04360 * 180.27139 * 5 4 3 31 31 H 1.09004 * 109.47344 * 4.71685 * 7 6 5 32 32 H 1.08998 * 109.46992 * 244.71608 * 7 6 5 33 33 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 34 34 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 35 35 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 36 36 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 37 37 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 39 39 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0757 3.2121 0.5430 6 6 2.3124 3.4724 -0.5998 7 6 2.2359 4.7882 -1.3305 8 6 2.5935 4.5796 -2.7795 9 8 2.8806 3.4756 -3.1781 10 8 2.5922 5.6200 -3.6277 11 6 2.9463 5.3451 -5.0087 12 6 2.8892 6.6424 -5.8177 13 6 1.5234 7.2650 -5.9525 14 1 1.2143 8.0418 -5.2689 15 6 0.6706 6.8465 -6.9518 16 7 0.9964 5.8207 -7.7077 17 14 -0.9475 7.7367 -7.2324 18 1 -0.6790 9.1595 -7.5621 19 1 -1.6757 7.0971 -8.3575 20 1 -1.7739 7.6614 -6.0008 21 6 4.0896 7.5864 -5.7248 22 6 3.8477 6.7789 -7.0025 23 7 1.6807 2.3747 -0.9282 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3178 1.4130 1.7368 30 1 3.7129 3.9175 1.0558 31 1 2.9348 5.4942 -0.8819 32 1 1.2231 5.1848 -1.2596 33 1 2.2434 4.6249 -5.4275 34 1 3.9551 4.9346 -5.0504 35 1 0.3966 5.5266 -8.4110 36 1 3.8916 8.6576 -5.7610 37 1 4.9203 7.2829 -5.0875 38 1 4.5193 5.9446 -7.2053 39 1 3.4902 7.3186 -7.8794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845474717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:06 Heat of formation + Delta-G solvation = 13.176570 kcal Electronic energy + Delta-G solvation = -21110.927972 eV Core-core repulsion = 17828.455098 eV Total energy + Delta-G solvation = -3282.472874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21106 -39.50013 -36.73710 -35.20610 -34.67012 -31.92046 -31.71273 -29.79384 -28.43109 -26.55589 -25.17161 -23.45914 -21.25230 -21.14576 -20.82740 -19.26026 -19.12927 -17.12109 -16.84893 -16.35795 -15.69187 -15.39659 -15.19144 -14.58865 -14.42082 -13.92289 -13.84304 -13.48231 -13.10992 -12.73868 -12.62670 -12.28452 -12.24917 -11.91164 -11.67340 -11.53810 -11.47850 -10.93192 -10.80988 -10.51289 -10.44911 -10.24343 -9.88967 -9.74370 -9.49469 -9.19958 -8.77958 -8.54484 -8.42261 -8.15862 -6.02358 -4.07565 1.93128 2.47022 2.72513 2.92422 3.33916 3.38451 3.41024 3.60647 4.30164 4.43159 4.70816 4.71101 4.80831 4.98604 5.19554 5.25613 5.28766 5.37761 5.51853 5.59182 5.62616 5.71015 5.80389 5.91800 6.04718 6.06562 6.30385 6.39439 6.60055 6.62781 6.73378 6.79128 7.02711 7.06987 7.36536 7.41508 7.54065 7.79986 7.90652 8.42060 8.58506 8.93690 9.58072 11.07116 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.003934 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.933797 B = 7116.167873 C = 7777.924649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.046 3.954 5 C -0.264 4.264 6 C 0.079 3.921 7 C -0.033 4.033 8 C 0.454 3.546 9 O -0.509 6.509 10 O -0.339 6.339 11 C 0.118 3.882 12 C 0.039 3.961 13 C -0.490 4.490 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.147 4.147 23 N -0.257 5.257 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.148 0.852 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -8.170 17.373 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.100 4.100 5 C -0.293 4.293 6 C -0.088 4.088 7 C -0.072 4.072 8 C 0.296 3.704 9 O -0.397 6.397 10 O -0.255 6.255 11 C 0.045 3.955 12 C 0.038 3.962 13 C -0.528 4.528 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.242 4.242 22 C -0.184 4.184 23 N -0.079 5.079 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.188 0.812 30 H 0.166 0.834 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.914 -9.328 16.225 18.813 hybrid contribution -0.196 0.501 0.258 0.597 sum 1.717 -8.827 16.484 18.777 Atomic orbital electron populations 1.22056 0.93817 1.02735 1.03749 1.21653 0.96118 0.77648 1.03559 1.48763 1.35796 1.10183 1.20942 1.22470 0.96164 0.94868 0.96469 1.21322 1.09351 0.96865 1.01770 1.21608 0.97417 0.94173 0.95637 1.19603 1.05930 0.92990 0.88677 1.23193 0.74820 0.83399 0.89027 1.90649 1.44459 1.25909 1.78734 1.86494 1.79159 1.37390 1.22420 1.22852 0.97612 0.99697 0.75383 1.18768 0.91062 0.91250 0.95083 1.20353 0.97415 1.20613 1.14390 0.91875 1.25011 0.98025 0.94652 0.95726 1.69990 1.37177 1.24326 1.20343 0.86651 0.83565 0.79962 0.77813 1.20146 1.21322 1.20104 1.23003 1.01460 0.97995 1.01773 1.22542 1.02395 1.00863 0.92626 1.77463 1.22997 0.96250 1.11141 0.92193 0.90808 0.90835 0.89767 0.88874 0.81173 0.83438 0.86132 0.86281 0.90671 0.94502 0.92882 0.90076 0.91540 0.91697 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.10 37.15 0.38 -1.06 16 2 C 0.13 1.18 7.23 -4.05 -0.03 1.15 16 3 N -0.37 -4.85 3.68 -61.37 -0.23 -5.07 16 4 C 0.05 0.50 11.45 -17.22 -0.20 0.30 16 5 C -0.26 -3.24 10.72 -40.01 -0.43 -3.67 16 6 C 0.08 1.22 6.02 -82.40 -0.50 0.72 16 7 C -0.03 -0.49 6.39 -29.03 -0.19 -0.67 16 8 C 0.45 9.22 7.95 36.01 0.29 9.51 16 9 O -0.51 -11.88 15.31 -18.76 -0.29 -12.17 16 10 O -0.34 -7.67 10.16 -39.25 -0.40 -8.07 16 11 C 0.12 2.91 5.29 37.15 0.20 3.10 16 12 C 0.04 0.99 1.61 -155.66 -0.25 0.74 16 13 C -0.49 -13.58 8.77 -34.44 -0.30 -13.88 16 14 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 15 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 16 N -0.88 -25.38 12.93 55.43 0.72 -24.67 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.21 -4.54 9.96 -26.70 -0.27 -4.80 16 22 C -0.15 -3.48 9.43 -26.69 -0.25 -3.73 16 23 N -0.26 -4.38 11.77 33.67 0.40 -3.99 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.37 8.12 -51.93 -0.42 0.95 16 32 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.07 2.07 8.13 -51.93 -0.42 1.64 16 34 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 37 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -34.39 342.93 -7.18 -41.57 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.88 Total: 1.36 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.64 Total: -10.47 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.89 Total: -33.73 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.69 Total: -20.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.39 -7.18 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845474717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.743 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds