Wall clock time and date at job start Mon Mar 30 2020 23:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47171 * 2 1 4 4 C 1.34947 * 126.03583 * 124.97615 * 3 2 1 5 5 C 1.35323 * 107.74601 * 179.75296 * 4 3 2 6 6 C 1.39873 * 107.91652 * 0.39480 * 5 4 3 7 7 C 1.50701 * 125.89599 * 179.86352 * 6 5 4 8 8 C 1.50700 * 109.47177 * 124.71219 * 7 6 5 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00368 * 179.97438 * 8 7 6 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 N 1.30837 * 108.20456 * 359.59964 * 6 5 4 24 24 H 1.08998 * 109.47242 * 299.99270 * 1 2 3 25 25 H 1.09002 * 109.47221 * 59.99860 * 1 2 3 26 26 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47571 * 240.00124 * 2 1 3 28 28 H 1.09002 * 109.47690 * 119.99892 * 2 1 3 29 29 H 1.08002 * 126.13355 * 359.97438 * 4 3 2 30 30 H 1.08003 * 126.04360 * 180.27139 * 5 4 3 31 31 H 1.09004 * 109.47344 * 4.71685 * 7 6 5 32 32 H 1.08998 * 109.46992 * 244.71608 * 7 6 5 33 33 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 34 34 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 35 35 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 36 36 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 37 37 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 39 39 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0757 3.2121 0.5430 6 6 2.3124 3.4724 -0.5998 7 6 2.2359 4.7882 -1.3305 8 6 2.5935 4.5796 -2.7795 9 8 2.8806 3.4756 -3.1781 10 8 2.5922 5.6200 -3.6277 11 6 2.9463 5.3451 -5.0087 12 6 2.8892 6.6424 -5.8177 13 6 1.5234 7.2650 -5.9525 14 1 1.2143 8.0418 -5.2689 15 6 0.6706 6.8465 -6.9518 16 7 0.9964 5.8207 -7.7077 17 14 -0.9475 7.7367 -7.2324 18 1 -0.6790 9.1595 -7.5621 19 1 -1.6757 7.0971 -8.3575 20 1 -1.7739 7.6614 -6.0008 21 6 4.0896 7.5864 -5.7248 22 6 3.8477 6.7789 -7.0025 23 7 1.6807 2.3747 -0.9282 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3178 1.4130 1.7368 30 1 3.7129 3.9175 1.0558 31 1 2.9348 5.4942 -0.8819 32 1 1.2231 5.1848 -1.2596 33 1 2.2434 4.6249 -5.4275 34 1 3.9551 4.9346 -5.0504 35 1 0.3966 5.5266 -8.4110 36 1 3.8916 8.6576 -5.7610 37 1 4.9203 7.2829 -5.0875 38 1 4.5193 5.9446 -7.2053 39 1 3.4902 7.3186 -7.8794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845474717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:06 Heat of formation + Delta-G solvation = -7.355735 kcal Electronic energy + Delta-G solvation = -21111.818319 eV Core-core repulsion = 17828.455098 eV Total energy + Delta-G solvation = -3283.363221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19850 -41.15981 -38.58895 -36.93165 -35.62264 -34.02462 -32.75190 -30.79236 -29.55917 -28.31686 -27.22061 -24.36019 -23.01783 -22.30794 -22.01234 -21.18390 -20.35840 -18.58913 -18.29493 -17.88845 -17.37323 -16.91283 -16.57124 -16.26602 -15.65552 -15.19041 -15.12286 -14.70669 -14.44693 -14.11448 -13.79240 -13.69722 -13.46910 -13.29422 -12.97634 -12.91070 -12.88488 -12.78291 -12.40809 -12.24130 -12.08269 -11.68285 -11.63829 -11.46515 -11.28767 -10.77779 -10.49103 -10.23772 -10.06982 -9.45196 -8.13654 -6.25123 0.98483 1.31763 1.42509 1.43786 1.51363 1.58192 1.69871 2.17600 2.42783 3.15461 3.42187 3.47551 3.82705 3.93189 4.05929 4.11067 4.15116 4.28964 4.34186 4.39535 4.48135 4.50699 4.65640 4.66940 4.77953 4.86038 4.89031 4.93940 4.97233 5.13269 5.18277 5.22124 5.46620 5.58622 5.67424 5.74320 5.77363 6.25821 6.36006 6.80459 6.82235 6.90046 7.43788 8.95251 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.003934 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.933797 B = 7116.167873 C = 7777.924649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 N -0.379 5.379 4 C 0.058 3.942 5 C -0.276 4.276 6 C 0.055 3.945 7 C -0.023 4.023 8 C 0.450 3.550 9 O -0.544 6.544 10 O -0.346 6.346 11 C 0.131 3.869 12 C 0.004 3.996 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.174 4.174 22 C -0.149 4.149 23 N -0.321 5.321 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.220 0.780 30 H 0.176 0.824 31 H 0.161 0.839 32 H 0.131 0.869 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.260 0.740 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 -7.966 19.994 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.162 5.162 4 C -0.088 4.088 5 C -0.305 4.305 6 C -0.111 4.111 7 C -0.062 4.062 8 C 0.294 3.706 9 O -0.435 6.435 10 O -0.262 6.262 11 C 0.057 3.943 12 C 0.004 3.996 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.211 4.211 22 C -0.187 4.187 23 N -0.145 5.145 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.237 0.763 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.149 0.851 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.624 -9.108 18.860 21.108 hybrid contribution -0.396 0.338 -0.474 0.703 sum 2.229 -8.770 18.386 20.492 Atomic orbital electron populations 1.22001 0.93969 1.03884 1.01890 1.22021 0.96127 0.76292 1.05371 1.49090 1.35961 1.10681 1.20496 1.23284 0.94385 0.94576 0.96527 1.21720 1.09479 0.98234 1.01052 1.21866 0.98369 0.93917 0.96950 1.19788 1.07495 0.94307 0.84600 1.24331 0.73373 0.82320 0.90588 1.90626 1.46111 1.27140 1.79614 1.86505 1.79528 1.38512 1.21624 1.22445 0.96701 0.98508 0.76625 1.18861 0.91411 0.92536 0.96827 1.20643 0.98827 1.20500 1.14302 0.92355 1.25758 1.01280 0.95261 0.95583 1.70112 1.38361 1.25624 1.20882 0.85685 0.79613 0.79206 0.77621 1.19007 1.21176 1.19795 1.23019 1.00060 0.97758 1.00236 1.22484 1.02246 1.01603 0.92366 1.77357 1.25270 0.97954 1.13891 0.92075 0.94516 0.88165 0.90646 0.84270 0.76311 0.80704 0.82141 0.85120 0.94852 0.93702 0.93080 0.89320 0.88966 0.90653 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.10 71.98 0.73 -1.94 16 2 C 0.12 1.98 7.23 86.38 0.62 2.61 16 3 N -0.38 -9.32 3.68 -348.07 -1.28 -10.60 16 4 C 0.06 1.07 11.45 83.54 0.96 2.03 16 5 C -0.28 -6.09 10.72 21.99 0.24 -5.85 16 6 C 0.05 1.66 6.02 43.10 0.26 1.92 16 7 C -0.02 -0.67 6.39 29.10 0.19 -0.49 16 8 C 0.45 18.53 7.95 71.24 0.57 19.10 16 9 O -0.54 -26.32 15.31 21.94 0.34 -25.98 16 10 O -0.35 -15.84 10.16 -51.40 -0.52 -16.36 16 11 C 0.13 6.64 5.29 71.98 0.38 7.02 16 12 C 0.00 0.21 1.61 -52.93 -0.08 0.12 16 13 C -0.51 -28.30 8.77 25.60 0.22 -28.07 16 14 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 15 C 0.02 1.20 5.39 84.65 0.46 1.65 16 16 N -0.91 -53.89 12.93 21.45 0.28 -53.62 16 17 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 C -0.17 -7.43 9.96 30.62 0.30 -7.12 16 22 C -0.15 -7.08 9.43 30.62 0.29 -6.79 16 23 N -0.32 -11.11 11.77 -47.38 -0.56 -11.66 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.14 0.96 8.07 -2.39 -0.02 0.94 16 29 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.16 3.23 8.12 -2.39 -0.02 3.21 16 32 H 0.13 3.42 8.14 -2.39 -0.02 3.41 16 33 H 0.03 1.93 8.13 -2.39 -0.02 1.91 16 34 H 0.04 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.09 3.64 8.14 -2.39 -0.02 3.63 16 37 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 38 H 0.07 3.35 8.14 -2.38 -0.02 3.33 16 39 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -78.17 342.93 6.43 -71.74 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.03 Total: 15.99 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.12 Total: -15.82 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.56 Total: -75.88 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.19 Total: -42.34 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -78.17 6.43 -71.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845474717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.380 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds