Wall clock time and date at job start Tue Mar 31 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99989 * 2 1 4 4 C 1.50703 * 109.47242 * 61.23099 * 3 2 1 5 5 H 1.07998 * 119.99582 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99738 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99916 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47168 * 90.00041 * 8 6 4 10 10 H 1.48502 * 109.47006 * 210.00002 * 8 6 4 11 11 H 1.48505 * 109.46839 * 329.99601 * 8 6 4 12 12 C 1.46901 * 111.00372 * 236.04498 * 2 1 3 13 13 C 1.52996 * 109.47291 * 201.35305 * 12 2 1 14 14 O 1.42899 * 109.46973 * 294.21528 * 13 12 2 15 15 C 1.50696 * 109.47267 * 54.21704 * 13 12 2 16 16 N 1.34766 * 120.00304 * 64.80709 * 15 13 12 17 17 O 1.21291 * 119.99719 * 244.80942 * 15 13 12 18 18 C 1.50697 * 109.46956 * 174.21822 * 13 12 2 19 19 C 1.38235 * 119.99863 * 329.72110 * 18 13 12 20 20 C 1.38243 * 120.00124 * 179.81370 * 19 18 13 21 21 C 1.38231 * 119.99584 * 0.39623 * 20 19 18 22 22 C 1.38239 * 120.00498 * 359.86045 * 21 20 19 23 23 C 1.38230 * 120.00233 * 149.99916 * 18 13 12 24 24 H 1.09001 * 109.46612 * 188.77422 * 1 2 3 25 25 H 1.09000 * 109.47025 * 308.76977 * 1 2 3 26 26 H 1.08999 * 109.47237 * 68.76915 * 1 2 3 27 27 H 1.08996 * 109.47345 * 181.23080 * 3 2 1 28 28 H 1.08998 * 109.46944 * 301.23110 * 3 2 1 29 29 H 0.96999 * 119.99482 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.46801 * 81.34849 * 12 2 1 31 31 H 1.08999 * 109.46836 * 321.35253 * 12 2 1 32 32 H 0.96709 * 113.99947 * 299.99696 * 14 13 12 33 33 H 0.96996 * 120.00226 * 0.02562 * 16 15 13 34 34 H 0.97005 * 120.00351 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.00126 * 0.02562 * 19 18 13 36 36 H 1.07997 * 120.00295 * 180.23428 * 20 19 18 37 37 H 1.07999 * 119.99960 * 179.83394 * 21 20 19 38 38 H 1.07995 * 120.00274 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.99814 * 359.97438 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5371 2.0855 1.2455 5 1 0.9171 1.5717 1.9652 6 6 1.9092 3.3947 1.4660 7 7 2.6646 4.0201 0.5897 8 14 1.3416 4.2795 3.0101 9 1 2.3376 4.0747 4.0924 10 1 1.2087 5.7314 2.7281 11 1 0.0274 3.7358 3.4373 12 6 1.9955 -0.7660 -1.1376 13 6 3.4325 -1.1986 -0.8397 14 8 4.2710 -0.0441 -0.7613 15 6 3.4726 -1.9387 0.4724 16 7 2.8316 -3.1172 0.6012 17 8 4.0818 -1.4737 1.4125 18 6 3.9236 -2.1021 -1.9413 19 6 3.0309 -2.9057 -2.6256 20 6 3.4808 -3.7317 -3.6388 21 6 4.8244 -3.7601 -3.9620 22 6 5.7180 -2.9605 -3.2741 23 6 5.2674 -2.1316 -2.2636 24 1 -0.3632 -1.0157 0.1568 25 1 -0.3633 0.6435 0.8012 26 1 -0.3634 0.3721 -0.9579 27 1 3.0848 1.3425 -0.0221 28 1 1.6282 1.9015 -0.8787 29 1 2.9261 4.9412 0.7448 30 1 1.9814 -0.1437 -2.0322 31 1 1.3764 -1.6485 -1.2990 32 1 4.2936 0.4814 -1.5728 33 1 2.3447 -3.4892 -0.1507 34 1 2.8571 -3.5934 1.4459 35 1 1.9815 -2.8858 -2.3711 36 1 2.7828 -4.3568 -4.1760 37 1 5.1763 -4.4074 -4.7517 38 1 6.7678 -2.9830 -3.5264 39 1 5.9654 -1.5068 -1.7262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851803692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:07 Heat of formation + Delta-G solvation = -44.479021 kcal Electronic energy + Delta-G solvation = -22475.427614 eV Core-core repulsion = 19190.454606 eV Total energy + Delta-G solvation = -3284.973008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.42519 -38.44832 -36.94715 -35.29799 -33.54669 -32.38763 -31.53852 -30.94908 -28.46397 -27.02779 -25.20158 -23.55319 -22.37168 -22.11607 -20.52305 -19.62473 -17.64149 -17.38332 -16.43330 -16.24898 -15.54677 -15.33347 -14.81248 -14.77529 -14.46899 -14.13268 -13.81689 -13.43335 -13.40601 -13.08243 -12.74236 -12.68770 -11.91612 -11.82747 -11.59416 -11.47264 -11.29698 -10.97958 -10.79506 -10.55136 -10.42083 -9.98622 -9.59081 -9.49873 -9.26355 -9.02947 -8.93270 -8.68547 -8.26991 -7.23973 -5.90654 -3.88751 1.17369 1.29258 3.18282 3.40636 3.46464 3.48920 3.54493 3.75457 4.34687 4.54480 4.65647 4.87137 4.95914 4.98897 5.12106 5.28532 5.32779 5.40004 5.47351 5.52632 5.72992 5.84377 5.93343 5.96111 6.09801 6.29112 6.33031 6.40318 6.48597 6.74810 6.86837 7.13337 7.39071 7.45137 7.62230 7.88703 8.00995 8.25527 8.27614 8.63851 8.76430 9.16052 9.72854 11.20914 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.004963 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.024891 B = 5640.443153 C = 5770.009308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.178 3.822 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.033 3.967 13 C 0.169 3.831 14 O -0.509 6.509 15 C 0.558 3.442 16 N -0.856 5.856 17 O -0.507 6.507 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.096 4.096 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.069 0.931 28 H -0.017 1.017 29 H 0.259 0.741 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.379 0.621 33 H 0.393 0.607 34 H 0.401 0.599 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -17.308 -10.684 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.257 5.257 3 C 0.053 3.947 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.096 4.096 13 C 0.123 3.877 14 O -0.314 6.314 15 C 0.341 3.659 16 N -0.422 5.422 17 O -0.379 6.379 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.114 4.114 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.000 1.000 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.227 0.773 33 H 0.220 0.780 34 H 0.232 0.768 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.669 -17.068 -9.155 19.440 hybrid contribution -0.983 0.803 -0.654 1.428 sum 0.686 -16.265 -9.808 19.006 Atomic orbital electron populations 1.22271 0.88851 0.99834 1.00434 1.62145 1.06682 1.18983 1.37914 1.20166 0.98326 0.80412 0.95751 1.21131 1.31126 0.96209 1.05593 0.92265 1.24921 0.95412 0.97510 0.96638 1.69949 1.36762 1.11750 1.35359 0.86550 0.78996 0.78492 0.83649 1.20628 1.21447 1.20065 1.22723 0.93563 0.98802 0.94547 1.19800 0.91322 0.86082 0.90521 1.86762 1.67314 1.36534 1.40785 1.19354 0.77903 0.80097 0.88521 1.43592 1.57177 1.23711 1.17684 1.90759 1.41649 1.65513 1.39935 1.20512 0.94542 0.98686 0.97828 1.21140 0.99498 0.96362 0.96283 1.21113 0.95823 0.99217 0.97724 1.21185 0.93618 0.99237 0.99777 1.21181 0.99775 0.96600 0.96212 1.21140 0.95219 0.98240 0.96777 0.93976 0.90091 0.97185 0.91332 0.99968 0.93153 0.93942 0.91120 0.77261 0.77966 0.76842 0.85584 0.85946 0.86195 0.85939 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.33 60.06 0.56 1.23 16 2 N -0.53 -11.48 4.11 -244.38 -1.01 -12.49 16 3 C 0.18 4.72 4.48 -4.97 -0.02 4.69 16 4 C -0.50 -14.72 8.36 -34.44 -0.29 -15.01 16 5 H 0.06 1.74 6.82 -52.49 -0.36 1.38 16 6 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 7 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 8 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 9 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.03 0.56 3.78 -3.83 -0.01 0.55 16 13 C 0.17 2.82 0.86 -92.93 -0.08 2.74 16 14 O -0.51 -10.00 8.68 -55.10 -0.48 -10.48 16 15 C 0.56 10.36 6.25 -10.99 -0.07 10.30 16 16 N -0.86 -11.28 8.70 31.22 0.27 -11.01 16 17 O -0.51 -12.22 17.34 -14.32 -0.25 -12.46 16 18 C -0.11 -1.50 4.59 -104.63 -0.48 -1.98 16 19 C -0.11 -1.21 8.13 -39.58 -0.32 -1.53 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.10 -1.22 9.35 -39.58 -0.37 -1.59 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.74 6.32 -51.93 -0.33 1.41 16 26 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 27 H 0.07 1.95 5.26 -51.93 -0.27 1.68 16 28 H -0.02 -0.49 8.14 -51.93 -0.42 -0.91 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.04 0.72 7.97 -51.93 -0.41 0.30 16 31 H 0.07 0.95 5.85 -51.93 -0.30 0.65 16 32 H 0.38 6.22 9.00 45.56 0.41 6.63 16 33 H 0.39 3.97 7.46 -40.82 -0.30 3.67 16 34 H 0.40 4.70 8.93 -40.82 -0.36 4.34 16 35 H 0.13 1.13 5.94 -52.49 -0.31 0.82 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.79 7.48 -52.49 -0.39 1.40 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -36.74 321.64 -7.58 -44.33 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.31 Total: 10.03 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.37 Total: -3.69 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.00 Total: -50.23 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.73 Total: -22.94 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.74 -7.58 -44.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851803692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.152 kcal (2) G-P(sol) polarization free energy of solvation -36.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds