Wall clock time and date at job start Tue Mar 31 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99989 * 2 1 4 4 C 1.50703 * 109.47242 * 61.23099 * 3 2 1 5 5 H 1.07998 * 119.99582 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99738 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99916 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47168 * 90.00041 * 8 6 4 10 10 H 1.48502 * 109.47006 * 210.00002 * 8 6 4 11 11 H 1.48505 * 109.46839 * 329.99601 * 8 6 4 12 12 C 1.46901 * 111.00372 * 236.04498 * 2 1 3 13 13 C 1.52996 * 109.47291 * 201.35305 * 12 2 1 14 14 O 1.42899 * 109.46973 * 294.21528 * 13 12 2 15 15 C 1.50696 * 109.47267 * 54.21704 * 13 12 2 16 16 N 1.34766 * 120.00304 * 64.80709 * 15 13 12 17 17 O 1.21291 * 119.99719 * 244.80942 * 15 13 12 18 18 C 1.50697 * 109.46956 * 174.21822 * 13 12 2 19 19 C 1.38235 * 119.99863 * 329.72110 * 18 13 12 20 20 C 1.38243 * 120.00124 * 179.81370 * 19 18 13 21 21 C 1.38231 * 119.99584 * 0.39623 * 20 19 18 22 22 C 1.38239 * 120.00498 * 359.86045 * 21 20 19 23 23 C 1.38230 * 120.00233 * 149.99916 * 18 13 12 24 24 H 1.09001 * 109.46612 * 188.77422 * 1 2 3 25 25 H 1.09000 * 109.47025 * 308.76977 * 1 2 3 26 26 H 1.08999 * 109.47237 * 68.76915 * 1 2 3 27 27 H 1.08996 * 109.47345 * 181.23080 * 3 2 1 28 28 H 1.08998 * 109.46944 * 301.23110 * 3 2 1 29 29 H 0.96999 * 119.99482 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.46801 * 81.34849 * 12 2 1 31 31 H 1.08999 * 109.46836 * 321.35253 * 12 2 1 32 32 H 0.96709 * 113.99947 * 299.99696 * 14 13 12 33 33 H 0.96996 * 120.00226 * 0.02562 * 16 15 13 34 34 H 0.97005 * 120.00351 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.00126 * 0.02562 * 19 18 13 36 36 H 1.07997 * 120.00295 * 180.23428 * 20 19 18 37 37 H 1.07999 * 119.99960 * 179.83394 * 21 20 19 38 38 H 1.07995 * 120.00274 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.99814 * 359.97438 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5371 2.0855 1.2455 5 1 0.9171 1.5717 1.9652 6 6 1.9092 3.3947 1.4660 7 7 2.6646 4.0201 0.5897 8 14 1.3416 4.2795 3.0101 9 1 2.3376 4.0747 4.0924 10 1 1.2087 5.7314 2.7281 11 1 0.0274 3.7358 3.4373 12 6 1.9955 -0.7660 -1.1376 13 6 3.4325 -1.1986 -0.8397 14 8 4.2710 -0.0441 -0.7613 15 6 3.4726 -1.9387 0.4724 16 7 2.8316 -3.1172 0.6012 17 8 4.0818 -1.4737 1.4125 18 6 3.9236 -2.1021 -1.9413 19 6 3.0309 -2.9057 -2.6256 20 6 3.4808 -3.7317 -3.6388 21 6 4.8244 -3.7601 -3.9620 22 6 5.7180 -2.9605 -3.2741 23 6 5.2674 -2.1316 -2.2636 24 1 -0.3632 -1.0157 0.1568 25 1 -0.3633 0.6435 0.8012 26 1 -0.3634 0.3721 -0.9579 27 1 3.0848 1.3425 -0.0221 28 1 1.6282 1.9015 -0.8787 29 1 2.9261 4.9412 0.7448 30 1 1.9814 -0.1437 -2.0322 31 1 1.3764 -1.6485 -1.2990 32 1 4.2936 0.4814 -1.5728 33 1 2.3447 -3.4892 -0.1507 34 1 2.8571 -3.5934 1.4459 35 1 1.9815 -2.8858 -2.3711 36 1 2.7828 -4.3568 -4.1760 37 1 5.1763 -4.4074 -4.7517 38 1 6.7678 -2.9830 -3.5264 39 1 5.9654 -1.5068 -1.7262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851803692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:06 Heat of formation + Delta-G solvation = -74.426379 kcal Electronic energy + Delta-G solvation = -22476.726228 eV Core-core repulsion = 19190.454606 eV Total energy + Delta-G solvation = -3286.271623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63827 -39.55848 -38.47481 -36.85404 -34.98986 -34.45945 -32.67049 -31.76763 -29.87418 -28.89935 -26.70163 -25.21028 -23.44551 -23.12740 -22.14125 -20.97945 -18.85325 -18.60160 -18.38487 -17.57813 -16.91793 -16.71893 -16.49855 -15.85313 -15.79912 -15.46191 -15.20573 -14.93856 -14.82929 -14.28035 -14.11147 -13.88174 -13.59555 -13.31560 -13.20156 -12.99474 -12.71821 -12.52326 -12.38758 -12.17712 -11.93470 -11.87546 -11.31206 -10.94553 -10.81833 -10.58415 -10.43879 -9.82975 -9.68535 -8.96673 -8.16460 -6.22325 0.33031 0.49203 1.36605 1.40889 1.49412 1.77137 2.36739 2.41596 2.85679 3.08838 3.17013 3.49605 3.75144 3.93691 4.04759 4.12667 4.16228 4.30883 4.40797 4.52931 4.62168 4.66664 4.74111 4.78464 5.01631 5.13471 5.16371 5.25460 5.54021 5.57023 5.60864 5.62375 5.66796 5.97786 6.08837 6.14440 6.39678 6.42731 6.65172 6.74364 6.92361 7.43967 7.46619 8.94968 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.004963 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.024891 B = 5640.443153 C = 5770.009308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.547 5.547 3 C 0.195 3.805 4 C -0.522 4.522 5 H 0.053 0.947 6 C 0.001 3.999 7 N -0.931 5.931 8 Si 0.961 3.039 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.263 1.263 12 C 0.036 3.964 13 C 0.168 3.832 14 O -0.543 6.543 15 C 0.551 3.449 16 N -0.828 5.828 17 O -0.577 6.577 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.018 0.982 27 H 0.044 0.956 28 H -0.043 1.043 29 H 0.261 0.739 30 H 0.043 0.957 31 H 0.114 0.886 32 H 0.385 0.615 33 H 0.412 0.588 34 H 0.410 0.590 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -19.914 -12.143 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.271 5.271 3 C 0.069 3.931 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.197 4.197 7 N -0.572 5.572 8 Si 0.786 3.214 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.188 1.188 12 C -0.093 4.093 13 C 0.123 3.877 14 O -0.349 6.349 15 C 0.335 3.665 16 N -0.394 5.394 17 O -0.455 6.455 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.062 0.938 28 H -0.026 1.026 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.132 0.868 32 H 0.234 0.766 33 H 0.243 0.757 34 H 0.242 0.758 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.026 -19.744 -10.652 22.434 hybrid contribution -0.475 1.474 -0.303 1.578 sum -0.449 -18.270 -10.955 21.307 Atomic orbital electron populations 1.22290 0.87371 1.01771 0.99833 1.61984 1.08118 1.16240 1.40748 1.19741 0.96826 0.82934 0.93574 1.21506 1.31087 0.96894 1.06515 0.92843 1.25813 0.95501 0.98439 0.99910 1.70072 1.37761 1.12116 1.37205 0.85508 0.78818 0.77619 0.79408 1.20754 1.20298 1.18774 1.22850 0.94160 0.99595 0.92721 1.19870 0.90958 0.85755 0.91121 1.86713 1.68282 1.38155 1.41750 1.19857 0.77256 0.80990 0.88375 1.43331 1.55363 1.21875 1.18853 1.90720 1.44891 1.67710 1.42155 1.20181 0.95175 0.99618 0.97914 1.21333 0.99876 0.95767 0.96229 1.21521 0.96417 0.98438 0.96717 1.21602 0.93554 0.98447 0.99602 1.21398 1.01130 0.96158 0.95478 1.21087 0.95032 0.99360 0.98138 0.89840 0.92930 0.96340 0.93831 1.02568 0.92981 0.93877 0.86789 0.76621 0.75698 0.75790 0.83622 0.82486 0.83124 0.84382 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 9.33 127.69 1.19 2.51 16 2 N -0.55 -23.62 4.11 -927.07 -3.81 -27.43 16 3 C 0.20 10.76 4.48 85.56 0.38 11.15 16 4 C -0.52 -31.54 8.36 25.60 0.21 -31.32 16 5 H 0.05 3.21 6.82 -2.91 -0.02 3.19 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.93 -58.68 13.29 21.45 0.28 -58.39 16 8 Si 0.96 47.39 29.54 68.60 2.03 49.41 16 9 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.04 1.16 3.78 86.30 0.33 1.49 16 13 C 0.17 5.69 0.86 -12.29 -0.01 5.68 16 14 O -0.54 -22.89 8.68 -129.99 -1.13 -24.02 16 15 C 0.55 20.68 6.25 87.66 0.55 21.23 16 16 N -0.83 -20.49 8.70 -173.54 -1.51 -22.00 16 17 O -0.58 -29.16 17.34 15.93 0.28 -28.88 16 18 C -0.13 -3.23 4.59 -19.87 -0.09 -3.32 16 19 C -0.11 -2.01 8.13 22.27 0.18 -1.83 16 20 C -0.11 -1.53 10.05 22.27 0.22 -1.31 16 21 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 22 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.12 -3.01 9.35 22.27 0.21 -2.80 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.05 2.25 6.32 -2.39 -0.02 2.23 16 26 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 27 H 0.04 2.64 5.26 -2.39 -0.01 2.63 16 28 H -0.04 -2.54 8.14 -2.39 -0.02 -2.56 16 29 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.04 1.43 7.97 -2.39 -0.02 1.41 16 31 H 0.11 2.65 5.85 -2.39 -0.01 2.63 16 32 H 0.38 13.96 9.00 -74.05 -0.67 13.30 16 33 H 0.41 6.98 7.46 -92.71 -0.69 6.29 16 34 H 0.41 9.00 8.93 -92.70 -0.83 8.18 16 35 H 0.15 1.89 5.94 -2.91 -0.02 1.88 16 36 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.11 3.20 7.48 -2.91 -0.02 3.18 16 Total: -1.00 -84.68 321.64 -0.86 -85.55 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -1.08 Total: 27.30 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.08 Total: -1.55 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -5.04 Total: -107.82 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.85 Total: -52.90 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -84.68 -0.86 -85.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851803692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.122 kcal (2) G-P(sol) polarization free energy of solvation -84.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds