Wall clock time and date at job start Tue Mar 31 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47002 * 2 1 4 4 C 1.34389 * 117.00169 * 180.02562 * 3 2 1 5 5 C 1.36317 * 120.00596 * 179.97438 * 4 3 2 6 6 C 1.43202 * 120.00492 * 180.02562 * 5 4 3 7 7 N 5.80627 * 147.24791 * 359.97438 * 2 1 3 8 8 C 1.47018 * 119.99688 * 0.02562 * 5 4 3 9 9 O 1.21662 * 120.00159 * 60.10048 * 8 5 4 10 10 N 1.34779 * 120.00044 * 240.10739 * 8 5 4 11 11 C 1.46927 * 120.62780 * 355.17430 * 10 8 5 12 12 C 1.53189 * 108.77789 * 126.43675 * 11 10 8 13 13 C 1.53036 * 109.31547 * 54.63040 * 12 11 10 14 14 C 1.53040 * 109.54072 * 298.64032 * 13 12 11 15 15 H 1.09005 * 109.49831 * 301.38146 * 14 13 12 16 16 C 1.50696 * 109.49982 * 181.31263 * 14 13 12 17 17 H 1.07997 * 120.00482 * 0.06586 * 16 14 13 18 18 C 1.37882 * 119.99698 * 180.33692 * 16 14 13 19 19 N 1.31517 * 119.99642 * 179.72384 * 18 16 14 20 20 Si 1.86802 * 120.00290 * 359.72720 * 18 16 14 21 21 H 1.48499 * 109.47017 * 89.99906 * 20 18 16 22 22 H 1.48498 * 109.47259 * 209.99859 * 20 18 16 23 23 H 1.48500 * 109.47004 * 329.99795 * 20 18 16 24 24 C 1.46934 * 120.60550 * 175.19660 * 10 8 5 25 25 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47323 * 299.99948 * 1 2 3 27 27 H 1.08997 * 109.47086 * 60.00091 * 1 2 3 28 28 H 1.09001 * 109.47323 * 240.00052 * 2 1 3 29 29 H 1.08997 * 109.47086 * 119.99909 * 2 1 3 30 30 H 1.08003 * 119.99491 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.58711 * 6.64412 * 11 10 8 32 32 H 1.09004 * 109.58857 * 246.22313 * 11 10 8 33 33 H 1.09005 * 109.49401 * 294.68288 * 12 11 10 34 34 H 1.08997 * 109.50216 * 174.58553 * 12 11 10 35 35 H 1.08992 * 109.46434 * 178.61670 * 13 12 11 36 36 H 1.09009 * 109.44839 * 58.65002 * 13 12 11 37 37 H 0.97003 * 119.99844 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.55820 * 113.76190 * 24 10 8 39 39 H 1.08991 * 109.61411 * 353.33350 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3462 1.5451 -0.0005 5 6 3.8673 2.8047 -0.0011 6 6 5.2870 2.9924 -0.0022 7 7 6.4132 3.1412 -0.0014 8 6 2.9718 3.9706 -0.0005 9 8 2.1854 4.1333 0.9134 10 7 3.0218 4.8593 -1.0126 11 6 4.0359 4.7350 -2.0685 12 6 3.3327 4.7298 -3.4294 13 6 2.4509 5.9750 -3.5483 14 6 1.3828 5.9523 -2.4526 15 1 0.7822 5.0476 -2.5486 16 6 0.4951 7.1623 -2.5903 17 1 0.6738 7.8760 -3.3809 18 6 -0.5417 7.3611 -1.7034 19 7 -1.3130 8.4199 -1.8203 20 14 -0.8509 6.1267 -0.3359 21 1 -0.0749 6.5175 0.8685 22 1 -2.2987 6.1052 -0.0064 23 1 -0.4247 4.7761 -0.7825 24 6 2.0633 5.9709 -1.0802 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0041 0.6885 -0.0014 31 1 4.5867 3.8034 -1.9382 32 1 4.7237 5.5790 -2.0158 33 1 2.7141 3.8364 -3.5159 34 1 4.0784 4.7349 -4.2244 35 1 1.9684 5.9863 -4.5256 36 1 3.0665 6.8676 -3.4368 37 1 -2.0422 8.5600 -1.1961 38 1 2.5901 6.9157 -0.9463 39 1 1.3127 5.8548 -0.2985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:24 Heat of formation + Delta-G solvation = -25.704468 kcal Electronic energy + Delta-G solvation = -22244.635293 eV Core-core repulsion = 18960.476411 eV Total energy + Delta-G solvation = -3284.158882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.16148 -39.06785 -36.94375 -36.63812 -33.47820 -32.95061 -31.89841 -31.05799 -30.35209 -25.43337 -25.16237 -23.78131 -23.01160 -22.01232 -20.63378 -19.04600 -18.01546 -17.46413 -16.70144 -16.53528 -16.21863 -15.73298 -14.64247 -14.16476 -13.96491 -13.95450 -13.61866 -13.37469 -13.18264 -13.12573 -13.04685 -12.79511 -12.64350 -12.51989 -12.24241 -12.09857 -11.77997 -11.35294 -11.26560 -11.03504 -10.56302 -10.36263 -10.06660 -9.74670 -9.62184 -9.19472 -9.05919 -8.77871 -8.56046 -8.01431 -6.07407 -4.08865 0.95533 2.35396 2.66290 3.01393 3.24166 3.41298 3.48896 3.59234 3.60356 4.13754 4.28021 4.45784 4.56457 4.60505 4.84296 5.04162 5.20324 5.25482 5.33322 5.38282 5.53407 5.57517 5.65006 5.85903 5.88256 6.04633 6.13350 6.21953 6.43183 6.56997 6.67783 6.77054 6.81993 6.91655 7.17584 7.42542 7.47239 7.74785 7.88642 8.48614 8.59556 8.95806 9.54266 11.04529 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.007204 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.915492 B = 3886.038043 C = 4925.548142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 O -0.292 6.292 4 C 0.184 3.816 5 C -0.194 4.194 6 C 0.276 3.724 7 N -0.424 5.424 8 C 0.574 3.426 9 O -0.529 6.529 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.135 4.135 13 C -0.100 4.100 14 C 0.005 3.995 15 H 0.032 0.968 16 C -0.515 4.515 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.272 1.272 22 H -0.296 1.296 23 H -0.261 1.261 24 C 0.104 3.896 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.265 0.735 38 H 0.067 0.933 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.113 -18.926 0.872 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 O -0.201 6.201 4 C 0.111 3.889 5 C -0.203 4.203 6 C -0.037 4.037 7 N -0.102 5.102 8 C 0.359 3.641 9 O -0.405 6.405 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.173 4.173 13 C -0.138 4.138 14 C -0.014 4.014 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.707 3.293 21 H -0.198 1.198 22 H -0.224 1.224 23 H -0.186 1.186 24 C -0.017 4.017 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.029 -18.352 1.434 20.503 hybrid contribution -0.504 -0.792 0.783 1.223 sum 8.525 -19.145 2.216 21.074 Atomic orbital electron populations 1.21807 0.92099 1.02987 1.04633 1.23495 0.97103 0.79469 1.02060 1.86381 1.18999 1.30738 1.83951 1.23003 0.84545 0.95571 0.85827 1.16822 0.85684 0.94216 1.23534 1.24782 0.91391 0.94509 0.93066 1.81271 1.11338 1.06572 1.11055 1.17478 0.82685 0.81484 0.82414 1.90813 1.39648 1.74834 1.35239 1.48372 1.32991 1.28202 1.23617 1.21708 0.90308 1.01297 0.87911 1.21976 0.99383 1.00528 0.95395 1.21444 0.96926 0.95468 0.99980 1.19490 0.93587 0.98623 0.89737 0.95024 1.20955 1.11768 1.07189 1.15433 0.90479 1.25048 0.95520 0.95045 0.97382 1.69896 1.18657 1.27302 1.37562 0.87008 0.76348 0.82995 0.82927 1.19818 1.22384 1.18581 1.22638 0.90842 0.86560 1.01633 0.90004 0.90953 0.90928 0.90968 0.90974 0.83606 0.91079 0.91560 0.91903 0.91686 0.92153 0.92497 0.92553 0.91464 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.05 0.38 6.84 37.16 0.25 0.63 16 3 O -0.29 -3.57 9.38 -16.00 -0.15 -3.72 16 4 C 0.18 1.93 10.13 30.04 0.30 2.24 16 5 C -0.19 -2.76 4.63 -105.11 -0.49 -3.25 16 6 C 0.28 3.84 13.07 -22.47 -0.29 3.54 16 7 N -0.42 -6.35 18.54 41.84 0.78 -5.57 16 8 C 0.57 11.12 6.64 -12.70 -0.08 11.03 16 9 O -0.53 -12.28 16.34 4.22 0.07 -12.21 16 10 N -0.60 -11.67 2.97 -174.18 -0.52 -12.19 16 11 C 0.11 1.73 5.98 -3.71 -0.02 1.70 16 12 C -0.13 -2.04 6.08 -26.62 -0.16 -2.20 16 13 C -0.10 -1.90 5.11 -26.69 -0.14 -2.04 16 14 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 15 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16 16 C -0.52 -14.30 9.15 -34.44 -0.32 -14.62 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.88 23.17 24.32 -169.99 -4.13 19.04 16 21 H -0.27 -7.31 6.91 56.52 0.39 -6.92 16 22 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 C 0.10 2.38 5.10 -3.70 -0.02 2.36 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.15 0.79 8.00 -52.48 -0.42 0.37 16 31 H 0.07 0.96 4.99 -51.93 -0.26 0.70 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.08 2.04 2.34 -51.93 -0.12 1.92 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -35.28 324.76 -4.56 -39.83 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.42 Total: -3.85 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.84 Total: 0.52 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 1.03 Total: -44.50 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.08 Total: -15.93 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.13 Total: 19.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.28 -4.56 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.129 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds