Wall clock time and date at job start Tue Mar 31 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47002 * 2 1 4 4 C 1.34389 * 117.00169 * 180.02562 * 3 2 1 5 5 C 1.36317 * 120.00596 * 179.97438 * 4 3 2 6 6 C 1.43202 * 120.00492 * 180.02562 * 5 4 3 7 7 N 5.80627 * 147.24791 * 359.97438 * 2 1 3 8 8 C 1.47018 * 119.99688 * 0.02562 * 5 4 3 9 9 O 1.21662 * 120.00159 * 60.10048 * 8 5 4 10 10 N 1.34779 * 120.00044 * 240.10739 * 8 5 4 11 11 C 1.46927 * 120.62780 * 355.17430 * 10 8 5 12 12 C 1.53189 * 108.77789 * 126.43675 * 11 10 8 13 13 C 1.53036 * 109.31547 * 54.63040 * 12 11 10 14 14 C 1.53040 * 109.54072 * 298.64032 * 13 12 11 15 15 H 1.09005 * 109.49831 * 301.38146 * 14 13 12 16 16 C 1.50696 * 109.49982 * 181.31263 * 14 13 12 17 17 H 1.07997 * 120.00482 * 0.06586 * 16 14 13 18 18 C 1.37882 * 119.99698 * 180.33692 * 16 14 13 19 19 N 1.31517 * 119.99642 * 179.72384 * 18 16 14 20 20 Si 1.86802 * 120.00290 * 359.72720 * 18 16 14 21 21 H 1.48499 * 109.47017 * 89.99906 * 20 18 16 22 22 H 1.48498 * 109.47259 * 209.99859 * 20 18 16 23 23 H 1.48500 * 109.47004 * 329.99795 * 20 18 16 24 24 C 1.46934 * 120.60550 * 175.19660 * 10 8 5 25 25 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47323 * 299.99948 * 1 2 3 27 27 H 1.08997 * 109.47086 * 60.00091 * 1 2 3 28 28 H 1.09001 * 109.47323 * 240.00052 * 2 1 3 29 29 H 1.08997 * 109.47086 * 119.99909 * 2 1 3 30 30 H 1.08003 * 119.99491 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.58711 * 6.64412 * 11 10 8 32 32 H 1.09004 * 109.58857 * 246.22313 * 11 10 8 33 33 H 1.09005 * 109.49401 * 294.68288 * 12 11 10 34 34 H 1.08997 * 109.50216 * 174.58553 * 12 11 10 35 35 H 1.08992 * 109.46434 * 178.61670 * 13 12 11 36 36 H 1.09009 * 109.44839 * 58.65002 * 13 12 11 37 37 H 0.97003 * 119.99844 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.55820 * 113.76190 * 24 10 8 39 39 H 1.08991 * 109.61411 * 353.33350 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3462 1.5451 -0.0005 5 6 3.8673 2.8047 -0.0011 6 6 5.2870 2.9924 -0.0022 7 7 6.4132 3.1412 -0.0014 8 6 2.9718 3.9706 -0.0005 9 8 2.1854 4.1333 0.9134 10 7 3.0218 4.8593 -1.0126 11 6 4.0359 4.7350 -2.0685 12 6 3.3327 4.7298 -3.4294 13 6 2.4509 5.9750 -3.5483 14 6 1.3828 5.9523 -2.4526 15 1 0.7822 5.0476 -2.5486 16 6 0.4951 7.1623 -2.5903 17 1 0.6738 7.8760 -3.3809 18 6 -0.5417 7.3611 -1.7034 19 7 -1.3130 8.4199 -1.8203 20 14 -0.8509 6.1267 -0.3359 21 1 -0.0749 6.5175 0.8685 22 1 -2.2987 6.1052 -0.0064 23 1 -0.4247 4.7761 -0.7825 24 6 2.0633 5.9709 -1.0802 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0041 0.6885 -0.0014 31 1 4.5867 3.8034 -1.9382 32 1 4.7237 5.5790 -2.0158 33 1 2.7141 3.8364 -3.5159 34 1 4.0784 4.7349 -4.2244 35 1 1.9684 5.9863 -4.5256 36 1 3.0665 6.8676 -3.4368 37 1 -2.0422 8.5600 -1.1961 38 1 2.5901 6.9157 -0.9463 39 1 1.3127 5.8548 -0.2985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:24 Heat of formation + Delta-G solvation = -51.091785 kcal Electronic energy + Delta-G solvation = -22245.736170 eV Core-core repulsion = 18960.476411 eV Total energy + Delta-G solvation = -3285.259759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45022 -40.11774 -38.44338 -37.76454 -35.30598 -34.03635 -33.45868 -32.31080 -31.66873 -27.19254 -26.71598 -24.64233 -23.91201 -23.57273 -22.03186 -20.57814 -19.32704 -18.84480 -18.32164 -17.68239 -17.13243 -16.96326 -16.41727 -15.83730 -15.52061 -15.29893 -14.92965 -14.85701 -14.38207 -14.34083 -14.12494 -13.94572 -13.82305 -13.72312 -13.51396 -13.29200 -13.14225 -12.90013 -12.43351 -12.32336 -12.12019 -11.92365 -11.80457 -11.58479 -11.29633 -11.04945 -10.87600 -10.77597 -9.78051 -9.55847 -8.37555 -6.39441 0.08203 1.24819 1.31937 1.36376 1.43083 1.53448 1.93096 2.06838 2.23226 2.40200 2.99505 3.26812 3.43308 3.84080 3.96025 4.08440 4.10464 4.11553 4.24024 4.40542 4.41003 4.51210 4.61040 4.65931 4.72224 4.83988 4.84795 4.93586 4.97391 5.13927 5.20869 5.26031 5.37659 5.52016 5.62640 5.70120 6.07918 6.27488 6.43304 6.45529 6.69220 7.12686 7.26174 8.78425 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.007204 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.915492 B = 3886.038043 C = 4925.548142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.045 3.955 3 O -0.330 6.330 4 C 0.236 3.764 5 C -0.238 4.238 6 C 0.300 3.700 7 N -0.450 5.450 8 C 0.569 3.431 9 O -0.581 6.581 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.123 4.123 13 C -0.098 4.098 14 C 0.007 3.993 15 H 0.021 0.979 16 C -0.510 4.510 17 H 0.050 0.950 18 C 0.028 3.972 19 N -0.938 5.938 20 Si 0.935 3.065 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.261 1.261 24 C 0.109 3.891 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.211 0.789 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.267 0.733 38 H 0.059 0.941 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.088 -22.762 0.334 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 O -0.238 6.238 4 C 0.162 3.838 5 C -0.248 4.248 6 C -0.013 4.013 7 N -0.130 5.130 8 C 0.358 3.642 9 O -0.461 6.461 10 N -0.337 5.337 11 C -0.014 4.014 12 C -0.161 4.161 13 C -0.136 4.136 14 C -0.013 4.013 15 H 0.039 0.961 16 C -0.549 4.549 17 H 0.069 0.931 18 C -0.170 4.170 19 N -0.578 5.578 20 Si 0.765 3.235 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.185 1.185 24 C -0.013 4.013 25 H 0.131 0.869 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.227 0.773 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.021 -22.220 0.865 24.818 hybrid contribution -1.212 0.322 0.922 1.557 sum 9.808 -21.898 1.786 24.061 Atomic orbital electron populations 1.21895 0.93357 1.04372 1.02443 1.23910 0.96194 0.77292 1.05305 1.86355 1.20380 1.34521 1.82569 1.23743 0.84590 0.95932 0.79551 1.16330 0.84962 0.93413 1.30057 1.24484 0.90862 0.93908 0.92059 1.81309 1.11866 1.06991 1.12795 1.18238 0.82627 0.82211 0.81155 1.90771 1.42272 1.76093 1.36970 1.48424 1.32932 1.27348 1.25024 1.21973 0.89588 1.03031 0.86806 1.21918 0.99557 0.98243 0.96403 1.21384 0.96284 0.97828 0.98097 1.19411 0.94247 0.95718 0.91923 0.96086 1.21307 1.11964 1.07846 1.13789 0.93138 1.25632 0.95851 0.96253 0.99304 1.69991 1.19808 1.29056 1.38947 0.86086 0.75866 0.81242 0.80302 1.21269 1.21903 1.18540 1.22148 0.91205 0.87931 1.00039 0.86852 0.93218 0.93052 0.87448 0.87898 0.77287 0.88296 0.91003 0.91417 0.87682 0.92011 0.92639 0.92387 0.92308 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 0.45 6.84 71.98 0.49 0.94 16 3 O -0.33 -6.96 9.38 -75.61 -0.71 -7.67 16 4 C 0.24 3.87 10.13 67.37 0.68 4.56 16 5 C -0.24 -6.12 4.63 -20.18 -0.09 -6.22 16 6 C 0.30 7.45 13.07 88.33 1.15 8.61 16 7 N -0.45 -12.34 18.54 19.00 0.35 -11.98 16 8 C 0.57 21.64 6.64 86.54 0.57 22.21 16 9 O -0.58 -27.38 16.34 -3.27 -0.05 -27.43 16 10 N -0.61 -23.13 2.97 -823.20 -2.45 -25.58 16 11 C 0.11 3.07 5.98 86.36 0.52 3.59 16 12 C -0.12 -3.34 6.08 30.67 0.19 -3.15 16 13 C -0.10 -3.61 5.11 30.62 0.16 -3.45 16 14 C 0.01 0.31 1.84 -11.46 -0.02 0.29 16 15 H 0.02 1.04 7.21 -2.38 -0.02 1.02 16 16 C -0.51 -29.19 9.15 25.60 0.23 -28.95 16 17 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 18 C 0.03 1.69 5.45 84.66 0.46 2.15 16 19 N -0.94 -59.45 13.96 21.45 0.30 -59.15 16 20 Si 0.94 50.17 24.32 68.60 1.67 51.84 16 21 H -0.29 -15.79 6.91 99.48 0.69 -15.10 16 22 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 23 H -0.26 -13.74 6.54 99.48 0.65 -13.09 16 24 C 0.11 5.09 5.10 86.36 0.44 5.53 16 25 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.21 0.71 8.00 -2.91 -0.02 0.69 16 31 H 0.10 2.32 4.99 -2.39 -0.01 2.31 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.05 2.69 2.34 -2.39 -0.01 2.68 16 Total: -1.00 -82.59 324.76 5.61 -76.97 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 0.98 Total: -1.64 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.52 Total: 4.64 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -1.80 Total: -96.71 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.76 Total: -35.10 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.67 Total: 51.84 kcal Total: -82.59 5.61 -76.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.881 kcal (2) G-P(sol) polarization free energy of solvation -82.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds