Wall clock time and date at job start Tue Mar 31 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47231 * 2 1 4 4 C 1.34392 * 116.99728 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99624 * 180.02562 * 4 3 2 6 6 C 1.43195 * 120.00017 * 359.97438 * 5 4 3 7 7 N 4.90259 * 99.07311 * 359.97438 * 2 1 3 8 8 C 1.47012 * 119.99909 * 179.97438 * 5 4 3 9 9 O 1.21657 * 120.00327 * 101.12542 * 8 5 4 10 10 N 1.34776 * 119.99616 * 281.12919 * 8 5 4 11 11 C 1.46929 * 120.63433 * 354.76097 * 10 8 5 12 12 C 1.53189 * 108.77926 * 126.41168 * 11 10 8 13 13 C 1.53044 * 109.33776 * 54.61975 * 12 11 10 14 14 C 1.53043 * 109.53743 * 298.68359 * 13 12 11 15 15 H 1.09001 * 109.49399 * 301.34471 * 14 13 12 16 16 C 1.50696 * 109.49383 * 181.28387 * 14 13 12 17 17 H 1.07998 * 120.00666 * 0.06815 * 16 14 13 18 18 C 1.37877 * 119.99790 * 180.33473 * 16 14 13 19 19 N 1.31514 * 119.99998 * 359.73164 * 18 16 14 20 20 Si 1.86802 * 120.00198 * 179.72562 * 18 16 14 21 21 H 1.48499 * 109.47294 * 90.00419 * 20 18 16 22 22 H 1.48498 * 109.47465 * 210.00716 * 20 18 16 23 23 H 1.48501 * 109.46907 * 330.00529 * 20 18 16 24 24 C 1.46926 * 120.62760 * 174.78021 * 10 8 5 25 25 H 1.08993 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46606 * 300.00162 * 1 2 3 27 27 H 1.08996 * 109.47014 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.47292 * 240.00136 * 2 1 3 29 29 H 1.08998 * 109.47691 * 119.99936 * 2 1 3 30 30 H 1.07996 * 119.99845 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.58175 * 246.20603 * 11 10 8 32 32 H 1.09001 * 109.58161 * 6.47630 * 11 10 8 33 33 H 1.08995 * 109.49583 * 174.58332 * 12 11 10 34 34 H 1.09000 * 109.49744 * 294.68633 * 12 11 10 35 35 H 1.08998 * 109.48186 * 178.64570 * 13 12 11 36 36 H 1.08993 * 109.43417 * 58.68763 * 13 12 11 37 37 H 0.97007 * 120.00141 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.58812 * 113.80392 * 24 10 8 39 39 H 1.08998 * 109.70660 * 353.44242 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3464 1.5450 -0.0005 5 6 3.8675 2.8047 0.0000 6 6 2.9952 3.9403 0.0005 7 7 2.3031 4.8412 -0.0022 8 6 5.3249 2.9973 -0.0001 9 8 5.9013 3.2790 -1.0337 10 7 6.0225 2.8618 1.1451 11 6 5.3302 2.6352 2.4211 12 6 5.9152 1.3843 3.0842 13 6 7.4323 1.5405 3.2114 14 6 8.0506 1.6838 1.8188 15 1 7.8057 0.8065 1.2201 16 6 9.5474 1.8060 1.9433 17 1 10.0120 1.7826 2.9179 18 6 10.3234 1.9531 0.8131 19 7 9.7577 1.9816 -0.3738 20 14 12.1782 2.1122 0.9678 21 1 12.7969 0.7633 0.9149 22 1 12.6990 2.9399 -0.1497 23 1 12.5132 2.7601 2.2614 24 6 7.4898 2.9381 1.1413 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.0042 0.6885 -0.0005 31 1 5.4752 3.4964 3.0734 32 1 4.2654 2.4905 2.2384 33 1 5.4780 1.2595 4.0749 34 1 5.6899 0.5098 2.4738 35 1 7.8481 0.6620 3.7048 36 1 7.6572 2.4287 3.8017 37 1 10.3037 2.0855 -1.1689 38 1 7.8110 3.8239 1.6893 39 1 7.8523 2.9921 0.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:30 Heat of formation + Delta-G solvation = -37.100576 kcal Electronic energy + Delta-G solvation = -21729.127035 eV Core-core repulsion = 18444.473981 eV Total energy + Delta-G solvation = -3284.653054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.92957 -39.06490 -36.83520 -36.15384 -33.59928 -32.90237 -31.82414 -30.92365 -29.69961 -25.23476 -24.96470 -23.58645 -23.28926 -21.86453 -20.67129 -18.91441 -18.06179 -16.89831 -16.70091 -16.35240 -16.05191 -15.45117 -14.57200 -14.17161 -13.77006 -13.64943 -13.61848 -13.49227 -13.04161 -12.99458 -12.94725 -12.66152 -12.47697 -12.27060 -12.01950 -11.88250 -11.72568 -11.37439 -11.02619 -10.95875 -10.52745 -10.43509 -10.27312 -9.94550 -9.54071 -9.18352 -8.98589 -8.60397 -8.45614 -7.82210 -6.03415 -4.11803 1.15612 2.53658 2.76180 3.24709 3.29600 3.37736 3.39584 3.51727 3.79942 4.18549 4.41031 4.51349 4.54490 4.81571 4.88518 5.04899 5.26990 5.29504 5.34597 5.41153 5.45518 5.65766 5.69271 5.83754 5.98786 6.12720 6.26913 6.54405 6.61932 6.79082 6.84122 6.92228 7.10457 7.20655 7.58866 7.76104 7.81979 7.94838 8.16715 8.34328 8.72763 8.92345 9.54299 11.02076 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.004439 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.708597 B = 6306.601241 C = 6570.862480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.162 3.838 5 C -0.174 4.174 6 C 0.281 3.719 7 N -0.434 5.434 8 C 0.573 3.427 9 O -0.520 6.520 10 N -0.594 5.594 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.881 5.881 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.111 3.889 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.045 0.955 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -6.987 4.158 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.090 3.910 5 C -0.183 4.183 6 C -0.033 4.033 7 N -0.112 5.112 8 C 0.356 3.644 9 O -0.395 6.395 10 N -0.326 5.326 11 C -0.018 4.018 12 C -0.171 4.171 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.009 4.009 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.172 0.828 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.816 -5.300 3.404 17.024 hybrid contribution 1.395 -0.499 0.095 1.484 sum -14.421 -5.799 3.498 15.932 Atomic orbital electron populations 1.21790 0.92492 1.03083 1.03847 1.23465 0.96490 0.79761 1.02604 1.86213 1.20001 1.30893 1.85295 1.23254 0.83752 0.96385 0.87625 1.17283 0.92413 0.87259 1.21324 1.24974 0.92633 0.92608 0.93094 1.81142 1.09674 1.09890 1.10519 1.17297 0.84061 0.78699 0.84322 1.90862 1.69889 1.47079 1.31706 1.48537 1.09447 1.69012 1.05644 1.21691 0.96073 0.98348 0.85675 1.21947 0.98534 0.97137 0.99436 1.21639 0.92223 1.00645 1.00436 1.18978 0.94663 0.93903 0.90304 0.95214 1.21070 0.90729 1.51280 0.92925 0.92322 1.25041 0.98674 0.94819 0.95406 1.69862 1.35412 1.48920 0.97639 0.86594 0.85622 0.78036 0.77759 1.20699 1.21164 1.19912 1.22394 0.72874 0.99049 1.06544 0.90001 0.91332 0.91353 0.90834 0.90745 0.82775 0.91744 0.90976 0.92117 0.92236 0.92930 0.93073 0.92569 0.93628 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.05 0.32 6.84 37.16 0.25 0.58 16 3 O -0.31 -3.29 9.51 -15.00 -0.14 -3.43 16 4 C 0.16 1.87 9.64 30.04 0.29 2.16 16 5 C -0.17 -2.71 3.81 -105.11 -0.40 -3.11 16 6 C 0.28 4.81 14.80 -22.47 -0.33 4.48 16 7 N -0.43 -7.99 18.54 41.84 0.78 -7.21 16 8 C 0.57 11.20 7.05 -12.71 -0.09 11.11 16 9 O -0.52 -12.52 16.55 5.23 0.09 -12.44 16 10 N -0.59 -11.32 2.97 -174.19 -0.52 -11.84 16 11 C 0.11 1.56 6.34 -3.71 -0.02 1.54 16 12 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 13 C -0.11 -2.05 5.11 -26.69 -0.14 -2.19 16 14 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 15 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.52 -13.53 8.57 -34.44 -0.30 -13.82 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 19 N -0.88 -24.76 11.38 55.43 0.63 -24.13 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.11 2.57 5.38 -3.71 -0.02 2.55 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.16 1.41 8.00 -52.49 -0.42 0.99 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.12 3.37 5.15 -51.93 -0.27 3.10 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -32.29 334.13 -5.60 -37.89 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.61 Total: -2.68 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.83 Total: 3.11 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.89 Total: -43.18 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.06 Total: -15.87 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.29 -5.60 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.791 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds