Wall clock time and date at job start Tue Mar 31 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47231 * 2 1 4 4 C 1.34392 * 116.99728 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99624 * 180.02562 * 4 3 2 6 6 C 1.43195 * 120.00017 * 359.97438 * 5 4 3 7 7 N 4.90259 * 99.07311 * 359.97438 * 2 1 3 8 8 C 1.47012 * 119.99909 * 179.97438 * 5 4 3 9 9 O 1.21657 * 120.00327 * 101.12542 * 8 5 4 10 10 N 1.34776 * 119.99616 * 281.12919 * 8 5 4 11 11 C 1.46929 * 120.63433 * 354.76097 * 10 8 5 12 12 C 1.53189 * 108.77926 * 126.41168 * 11 10 8 13 13 C 1.53044 * 109.33776 * 54.61975 * 12 11 10 14 14 C 1.53043 * 109.53743 * 298.68359 * 13 12 11 15 15 H 1.09001 * 109.49399 * 301.34471 * 14 13 12 16 16 C 1.50696 * 109.49383 * 181.28387 * 14 13 12 17 17 H 1.07998 * 120.00666 * 0.06815 * 16 14 13 18 18 C 1.37877 * 119.99790 * 180.33473 * 16 14 13 19 19 N 1.31514 * 119.99998 * 359.73164 * 18 16 14 20 20 Si 1.86802 * 120.00198 * 179.72562 * 18 16 14 21 21 H 1.48499 * 109.47294 * 90.00419 * 20 18 16 22 22 H 1.48498 * 109.47465 * 210.00716 * 20 18 16 23 23 H 1.48501 * 109.46907 * 330.00529 * 20 18 16 24 24 C 1.46926 * 120.62760 * 174.78021 * 10 8 5 25 25 H 1.08993 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46606 * 300.00162 * 1 2 3 27 27 H 1.08996 * 109.47014 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.47292 * 240.00136 * 2 1 3 29 29 H 1.08998 * 109.47691 * 119.99936 * 2 1 3 30 30 H 1.07996 * 119.99845 * 359.97438 * 4 3 2 31 31 H 1.09001 * 109.58175 * 246.20603 * 11 10 8 32 32 H 1.09001 * 109.58161 * 6.47630 * 11 10 8 33 33 H 1.08995 * 109.49583 * 174.58332 * 12 11 10 34 34 H 1.09000 * 109.49744 * 294.68633 * 12 11 10 35 35 H 1.08998 * 109.48186 * 178.64570 * 13 12 11 36 36 H 1.08993 * 109.43417 * 58.68763 * 13 12 11 37 37 H 0.97007 * 120.00141 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.58812 * 113.80392 * 24 10 8 39 39 H 1.08998 * 109.70660 * 353.44242 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3464 1.5450 -0.0005 5 6 3.8675 2.8047 0.0000 6 6 2.9952 3.9403 0.0005 7 7 2.3031 4.8412 -0.0022 8 6 5.3249 2.9973 -0.0001 9 8 5.9013 3.2790 -1.0337 10 7 6.0225 2.8618 1.1451 11 6 5.3302 2.6352 2.4211 12 6 5.9152 1.3843 3.0842 13 6 7.4323 1.5405 3.2114 14 6 8.0506 1.6838 1.8188 15 1 7.8057 0.8065 1.2201 16 6 9.5474 1.8060 1.9433 17 1 10.0120 1.7826 2.9179 18 6 10.3234 1.9531 0.8131 19 7 9.7577 1.9816 -0.3738 20 14 12.1782 2.1122 0.9678 21 1 12.7969 0.7633 0.9149 22 1 12.6990 2.9399 -0.1497 23 1 12.5132 2.7601 2.2614 24 6 7.4898 2.9381 1.1413 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 4.0042 0.6885 -0.0005 31 1 5.4752 3.4964 3.0734 32 1 4.2654 2.4905 2.2384 33 1 5.4780 1.2595 4.0749 34 1 5.6899 0.5098 2.4738 35 1 7.8481 0.6620 3.7048 36 1 7.6572 2.4287 3.8017 37 1 10.3037 2.0855 -1.1689 38 1 7.8110 3.8239 1.6893 39 1 7.8523 2.9921 0.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:28 Heat of formation + Delta-G solvation = -57.949853 kcal Electronic energy + Delta-G solvation = -21730.031128 eV Core-core repulsion = 18444.473981 eV Total energy + Delta-G solvation = -3285.557147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25025 -40.14119 -38.35612 -37.49679 -35.31217 -34.03612 -33.23566 -31.88993 -31.25491 -27.06536 -26.38788 -24.61237 -24.00197 -23.37523 -22.11426 -20.36296 -19.29904 -18.42652 -17.87123 -17.56496 -17.10232 -16.84708 -16.43241 -15.68681 -15.11243 -15.06590 -14.80119 -14.59534 -14.44316 -14.28412 -13.98873 -13.86513 -13.61694 -13.49072 -13.37472 -13.20012 -12.84931 -12.66654 -12.38199 -12.22707 -12.20205 -11.89812 -11.73107 -11.56502 -11.19744 -10.89332 -10.75576 -10.45585 -9.68556 -9.41646 -8.06618 -6.21644 0.11237 1.32139 1.43197 1.46265 1.54408 1.55318 2.03349 2.21138 2.43845 2.51460 3.08172 3.23052 3.72876 3.92220 4.13408 4.14355 4.17779 4.24174 4.43594 4.45983 4.67130 4.71120 4.82824 4.88694 4.90072 4.94253 4.99109 5.18833 5.28665 5.32538 5.36312 5.44018 5.59333 5.68397 5.96769 5.99961 6.05631 6.39508 6.49922 6.63681 6.90666 7.23184 7.48284 8.96668 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.004439 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.708597 B = 6306.601241 C = 6570.862480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.040 3.960 3 O -0.324 6.324 4 C 0.224 3.776 5 C -0.220 4.220 6 C 0.296 3.704 7 N -0.473 5.473 8 C 0.576 3.424 9 O -0.580 6.580 10 N -0.594 5.594 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.040 3.960 15 H 0.002 0.998 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.913 5.913 20 Si 0.951 3.049 21 H -0.274 1.274 22 H -0.291 1.291 23 H -0.266 1.266 24 C 0.124 3.876 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.032 0.968 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -9.187 6.087 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 O -0.232 6.232 4 C 0.150 3.850 5 C -0.230 4.230 6 C -0.017 4.017 7 N -0.153 5.153 8 C 0.362 3.638 9 O -0.460 6.460 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.160 4.160 13 C -0.145 4.145 14 C 0.021 3.979 15 H 0.021 0.979 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.551 5.551 20 Si 0.777 3.223 21 H -0.200 1.200 22 H -0.217 1.217 23 H -0.190 1.190 24 C 0.002 3.998 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.204 0.796 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.493 -7.527 5.389 19.791 hybrid contribution 1.800 0.033 -0.490 1.866 sum -15.693 -7.494 4.899 18.067 Atomic orbital electron populations 1.21854 0.91977 1.04445 1.03028 1.23940 0.96931 0.77503 1.04923 1.86227 1.19277 1.34351 1.83381 1.23502 0.84617 0.95582 0.81317 1.16621 0.89644 0.88375 1.28318 1.25184 0.92215 0.92435 0.91897 1.81141 1.10875 1.10427 1.12812 1.17735 0.85586 0.77159 0.83292 1.90822 1.71694 1.49614 1.33828 1.48521 1.07953 1.68507 1.07495 1.22019 0.97438 0.99079 0.83552 1.21910 0.95192 0.97009 1.01901 1.21535 0.95260 1.00786 0.96919 1.18912 0.93675 0.92419 0.92900 0.97938 1.21528 0.92726 1.50232 0.92792 0.92176 1.25796 1.02755 0.94843 0.95202 1.70041 1.36581 1.50354 0.98160 0.85661 0.80887 0.78084 0.77667 1.19974 1.21707 1.19010 1.21824 0.75841 0.98587 1.03581 0.87522 0.91883 0.92508 0.89045 0.87944 0.79610 0.91142 0.87805 0.87934 0.91188 0.92498 0.93191 0.93148 0.94927 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.29 71.98 0.74 -0.43 16 2 C 0.04 0.32 6.84 71.98 0.49 0.82 16 3 O -0.32 -5.57 9.51 -76.60 -0.73 -6.30 16 4 C 0.22 4.41 9.64 67.37 0.65 5.06 16 5 C -0.22 -6.58 3.81 -20.18 -0.08 -6.65 16 6 C 0.30 9.98 14.80 88.33 1.31 11.28 16 7 N -0.47 -17.45 18.54 19.00 0.35 -17.09 16 8 C 0.58 22.80 7.05 86.54 0.61 23.41 16 9 O -0.58 -29.35 16.55 -4.21 -0.07 -29.42 16 10 N -0.59 -22.55 2.97 -823.23 -2.45 -25.00 16 11 C 0.10 2.70 6.34 86.36 0.55 3.25 16 12 C -0.12 -3.02 6.08 30.67 0.19 -2.83 16 13 C -0.11 -3.74 5.11 30.62 0.16 -3.58 16 14 C 0.04 1.87 2.25 -11.46 -0.03 1.85 16 15 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 16 C -0.53 -28.10 8.57 25.60 0.22 -27.88 16 17 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.91 -53.41 11.38 21.45 0.24 -53.17 16 20 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.12 5.91 5.38 86.36 0.46 6.37 16 25 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.19 2.52 8.00 -2.91 -0.02 2.50 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.18 5.95 -2.39 -0.01 2.16 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 4.60 5.15 -2.39 -0.01 4.59 16 Total: -1.00 -76.01 334.13 6.14 -69.87 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.04 Total: 4.08 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.72 Total: 11.84 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -1.85 Total: -95.26 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.80 Total: -35.72 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -76.01 6.14 -69.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.921 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds