Wall clock time and date at job start Tue Mar 31 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47290 * 2 1 4 4 C 1.34381 * 117.00391 * 179.97438 * 3 2 1 5 5 C 1.36317 * 120.00457 * 179.97438 * 4 3 2 6 6 C 1.43202 * 119.99582 * 0.02562 * 5 4 3 7 7 N 4.90263 * 99.07224 * 359.97438 * 2 1 3 8 8 C 1.47013 * 120.00260 * 180.02562 * 5 4 3 9 9 O 1.21660 * 119.99936 * 301.10950 * 8 5 4 10 10 N 1.34771 * 120.00395 * 121.11043 * 8 5 4 11 11 C 1.46934 * 120.62493 * 4.39830 * 10 8 5 12 12 C 1.52762 * 109.00427 * 233.58036 * 11 10 8 13 13 C 1.53038 * 109.39013 * 305.59068 * 12 11 10 14 14 C 1.53043 * 109.53406 * 61.23494 * 13 12 11 15 15 H 1.09007 * 109.49723 * 58.59602 * 14 13 12 16 16 C 1.50705 * 109.49228 * 178.68387 * 14 13 12 17 17 H 1.07991 * 120.00440 * 359.84396 * 16 14 13 18 18 C 1.37877 * 119.99672 * 179.83954 * 16 14 13 19 19 N 1.31520 * 120.00039 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99960 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47030 * 60.00335 * 20 18 16 22 22 H 1.48504 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47254 * 300.00471 * 20 18 16 24 24 C 1.46923 * 120.63589 * 184.67505 * 10 8 5 25 25 H 1.08997 * 109.47696 * 300.00432 * 1 2 3 26 26 H 1.09003 * 109.47028 * 60.00717 * 1 2 3 27 27 H 1.09002 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47558 * 239.99088 * 2 1 3 29 29 H 1.09010 * 109.46675 * 119.99366 * 2 1 3 30 30 H 1.08012 * 119.99880 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.58610 * 353.41956 * 11 10 8 32 32 H 1.09001 * 109.58450 * 113.84706 * 11 10 8 33 33 H 1.09001 * 109.56236 * 185.55036 * 12 11 10 34 34 H 1.09001 * 109.38522 * 65.52277 * 12 11 10 35 35 H 1.09003 * 109.45648 * 301.22161 * 13 12 11 36 36 H 1.08992 * 109.46225 * 181.25865 * 13 12 11 37 37 H 0.96999 * 119.99502 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.58807 * 246.15474 * 24 10 8 39 39 H 1.09003 * 109.58321 * 6.44342 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3462 1.5451 0.0005 5 6 3.8673 2.8047 0.0000 6 6 2.9950 3.9404 -0.0005 7 7 2.3030 4.8413 -0.0022 8 6 5.3248 2.9974 0.0001 9 8 5.9991 2.5378 0.9024 10 7 5.9139 3.6831 -0.9994 11 6 5.1053 4.3259 -2.0444 12 6 5.5971 3.8573 -3.4127 13 6 7.1001 4.1202 -3.5298 14 6 7.8435 3.3296 -2.4506 15 1 7.6305 2.2669 -2.5664 16 6 9.3260 3.5638 -2.5871 17 1 9.7012 4.2096 -3.3671 18 6 10.2033 2.9535 -1.7160 19 7 9.7465 2.1666 -0.7663 20 14 12.0408 3.2442 -1.8846 21 1 12.3292 4.6926 -1.7282 22 1 12.7614 2.4794 -0.8353 23 1 12.4927 2.7915 -3.2248 24 6 7.3771 3.7970 -1.0683 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 4.0042 0.6885 0.0014 31 1 4.0587 4.0484 -1.9189 32 1 5.2096 5.4085 -1.9728 33 1 5.0703 4.4022 -4.1961 34 1 5.4050 2.7897 -3.5200 35 1 7.2939 5.1848 -3.3983 36 1 7.4480 3.8068 -4.5140 37 1 10.3638 1.7370 -0.1537 38 1 7.6704 4.8356 -0.9156 39 1 7.8289 3.1725 -0.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:38 Heat of formation + Delta-G solvation = -36.198530 kcal Electronic energy + Delta-G solvation = -21666.606035 eV Core-core repulsion = 18381.992096 eV Total energy + Delta-G solvation = -3284.613939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92364 -39.09069 -36.75925 -36.31299 -33.43735 -32.93422 -31.80417 -30.91625 -29.71003 -25.33973 -24.92377 -23.56211 -23.19265 -21.79895 -20.60621 -19.05614 -18.06035 -16.75743 -16.63141 -16.35684 -15.99705 -15.45394 -14.62278 -14.24311 -13.80522 -13.67449 -13.52708 -13.47442 -13.02526 -12.96938 -12.95364 -12.61450 -12.42084 -12.25381 -12.03949 -11.85604 -11.73797 -11.37051 -10.98672 -10.90057 -10.52546 -10.37659 -10.23800 -9.90831 -9.52245 -9.14520 -8.95551 -8.64650 -8.44306 -7.78490 -6.01555 -4.09675 1.14351 2.54355 2.80687 3.21072 3.31924 3.37999 3.39411 3.54854 3.82557 4.18994 4.42478 4.50359 4.54375 4.81149 4.88424 5.07198 5.28867 5.32178 5.37344 5.40813 5.52271 5.68193 5.72197 5.85904 6.03439 6.19092 6.31835 6.59528 6.66355 6.81011 6.86748 6.96280 7.13104 7.23134 7.61215 7.72879 7.84768 7.97166 8.19175 8.36672 8.74573 8.94178 9.56008 11.04023 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.004374 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.998697 B = 6399.373799 C = 6796.378835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 O -0.315 6.315 4 C 0.177 3.823 5 C -0.184 4.184 6 C 0.276 3.724 7 N -0.435 5.435 8 C 0.574 3.426 9 O -0.527 6.527 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.132 4.132 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.112 3.888 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.045 0.955 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.278 -5.297 -1.070 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.224 6.224 4 C 0.105 3.895 5 C -0.192 4.192 6 C -0.038 4.038 7 N -0.113 5.113 8 C 0.359 3.641 9 O -0.404 6.404 10 N -0.325 5.325 11 C -0.015 4.015 12 C -0.170 4.170 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.060 -4.144 -0.433 16.592 hybrid contribution 1.336 -0.351 -0.133 1.388 sum -14.724 -4.495 -0.566 15.405 Atomic orbital electron populations 1.21793 0.92478 1.03097 1.03848 1.23472 0.96482 0.79699 1.02656 1.86196 1.20129 1.31002 1.85115 1.23228 0.83561 0.96545 0.86202 1.17355 0.92317 0.87263 1.22314 1.25120 0.92777 0.92853 0.93034 1.81168 1.09377 1.10040 1.10721 1.17241 0.84531 0.79616 0.82717 1.90855 1.64138 1.50120 1.35259 1.48471 1.09604 1.50604 1.23781 1.21614 0.94327 0.97188 0.88418 1.21862 0.98646 1.01201 0.95325 1.21639 0.92323 1.00440 1.00500 1.18972 0.94271 0.95466 0.89108 0.95153 1.21044 0.90431 1.29271 1.15228 0.92375 1.25037 0.98905 0.94780 0.95204 1.69860 1.34808 1.29959 1.17281 0.86648 0.85276 0.78327 0.77689 1.20250 1.21249 1.20314 1.22389 0.73455 1.01026 1.03880 0.91350 0.91324 0.89983 0.90742 0.90750 0.82517 0.91244 0.91973 0.92154 0.92022 0.93128 0.92894 0.92566 0.93704 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.05 0.33 6.84 37.16 0.25 0.59 16 3 O -0.31 -3.36 9.50 -14.97 -0.14 -3.50 16 4 C 0.18 2.11 10.14 30.04 0.30 2.42 16 5 C -0.18 -2.87 4.67 -105.11 -0.49 -3.36 16 6 C 0.28 4.55 12.44 -22.47 -0.28 4.27 16 7 N -0.43 -7.65 18.54 41.84 0.78 -6.87 16 8 C 0.57 11.29 7.11 -12.71 -0.09 11.20 16 9 O -0.53 -12.21 16.53 5.22 0.09 -12.13 16 10 N -0.59 -11.88 2.98 -174.45 -0.52 -12.40 16 11 C 0.11 1.81 5.93 -3.93 -0.02 1.79 16 12 C -0.13 -2.13 6.06 -26.83 -0.16 -2.30 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 14 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -13.77 8.56 -34.44 -0.29 -14.06 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -24.85 11.39 55.43 0.63 -24.22 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.11 2.66 5.39 -3.71 -0.02 2.64 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.16 1.52 8.00 -52.48 -0.42 1.10 16 31 H 0.07 1.06 4.95 -51.93 -0.26 0.81 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.12 3.40 5.15 -51.93 -0.27 3.14 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -31.73 331.77 -5.61 -37.33 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.56 Total: -1.84 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.86 Total: 2.78 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.89 Total: -43.49 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.06 Total: -15.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.73 -5.61 -37.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.135 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds