Wall clock time and date at job start Tue Mar 31 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47290 * 2 1 4 4 C 1.34381 * 117.00391 * 179.97438 * 3 2 1 5 5 C 1.36317 * 120.00457 * 179.97438 * 4 3 2 6 6 C 1.43202 * 119.99582 * 0.02562 * 5 4 3 7 7 N 4.90263 * 99.07224 * 359.97438 * 2 1 3 8 8 C 1.47013 * 120.00260 * 180.02562 * 5 4 3 9 9 O 1.21660 * 119.99936 * 301.10950 * 8 5 4 10 10 N 1.34771 * 120.00395 * 121.11043 * 8 5 4 11 11 C 1.46934 * 120.62493 * 4.39830 * 10 8 5 12 12 C 1.52762 * 109.00427 * 233.58036 * 11 10 8 13 13 C 1.53038 * 109.39013 * 305.59068 * 12 11 10 14 14 C 1.53043 * 109.53406 * 61.23494 * 13 12 11 15 15 H 1.09007 * 109.49723 * 58.59602 * 14 13 12 16 16 C 1.50705 * 109.49228 * 178.68387 * 14 13 12 17 17 H 1.07991 * 120.00440 * 359.84396 * 16 14 13 18 18 C 1.37877 * 119.99672 * 179.83954 * 16 14 13 19 19 N 1.31520 * 120.00039 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99960 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47030 * 60.00335 * 20 18 16 22 22 H 1.48504 * 109.47407 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47254 * 300.00471 * 20 18 16 24 24 C 1.46923 * 120.63589 * 184.67505 * 10 8 5 25 25 H 1.08997 * 109.47696 * 300.00432 * 1 2 3 26 26 H 1.09003 * 109.47028 * 60.00717 * 1 2 3 27 27 H 1.09002 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47558 * 239.99088 * 2 1 3 29 29 H 1.09010 * 109.46675 * 119.99366 * 2 1 3 30 30 H 1.08012 * 119.99880 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.58610 * 353.41956 * 11 10 8 32 32 H 1.09001 * 109.58450 * 113.84706 * 11 10 8 33 33 H 1.09001 * 109.56236 * 185.55036 * 12 11 10 34 34 H 1.09001 * 109.38522 * 65.52277 * 12 11 10 35 35 H 1.09003 * 109.45648 * 301.22161 * 13 12 11 36 36 H 1.08992 * 109.46225 * 181.25865 * 13 12 11 37 37 H 0.96999 * 119.99502 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.58807 * 246.15474 * 24 10 8 39 39 H 1.09003 * 109.58321 * 6.44342 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3462 1.5451 0.0005 5 6 3.8673 2.8047 0.0000 6 6 2.9950 3.9404 -0.0005 7 7 2.3030 4.8413 -0.0022 8 6 5.3248 2.9974 0.0001 9 8 5.9991 2.5378 0.9024 10 7 5.9139 3.6831 -0.9994 11 6 5.1053 4.3259 -2.0444 12 6 5.5971 3.8573 -3.4127 13 6 7.1001 4.1202 -3.5298 14 6 7.8435 3.3296 -2.4506 15 1 7.6305 2.2669 -2.5664 16 6 9.3260 3.5638 -2.5871 17 1 9.7012 4.2096 -3.3671 18 6 10.2033 2.9535 -1.7160 19 7 9.7465 2.1666 -0.7663 20 14 12.0408 3.2442 -1.8846 21 1 12.3292 4.6926 -1.7282 22 1 12.7614 2.4794 -0.8353 23 1 12.4927 2.7915 -3.2248 24 6 7.3771 3.7970 -1.0683 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 4.0042 0.6885 0.0014 31 1 4.0587 4.0484 -1.9189 32 1 5.2096 5.4085 -1.9728 33 1 5.0703 4.4022 -4.1961 34 1 5.4050 2.7897 -3.5200 35 1 7.2939 5.1848 -3.3983 36 1 7.4480 3.8068 -4.5140 37 1 10.3638 1.7370 -0.1537 38 1 7.6704 4.8356 -0.9156 39 1 7.8289 3.1725 -0.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:36 Heat of formation + Delta-G solvation = -56.197676 kcal Electronic energy + Delta-G solvation = -21667.473263 eV Core-core repulsion = 18381.992096 eV Total energy + Delta-G solvation = -3285.481167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28134 -40.18782 -38.35657 -37.60464 -35.25641 -33.95425 -33.34654 -31.91959 -31.32920 -27.15399 -26.45461 -24.57357 -24.02616 -23.39117 -22.08424 -20.52810 -19.42241 -18.35579 -17.68670 -17.61304 -17.11479 -16.89254 -16.47817 -15.81547 -15.27840 -15.10459 -14.73456 -14.58698 -14.46447 -14.31454 -13.93249 -13.89005 -13.64492 -13.52842 -13.40120 -13.23036 -12.82625 -12.67368 -12.40742 -12.26223 -12.21989 -11.90980 -11.80873 -11.61336 -11.19707 -10.93096 -10.76493 -10.46626 -9.76967 -9.42559 -8.06716 -6.22032 0.07536 1.41014 1.45497 1.46698 1.53457 1.54649 1.95067 2.27535 2.42931 2.49789 3.03984 3.22232 3.70922 3.90188 4.01613 4.11234 4.14857 4.16373 4.35579 4.42902 4.57368 4.70755 4.75538 4.80861 4.85121 4.91944 4.96746 5.11166 5.25797 5.26475 5.29503 5.39002 5.55315 5.64487 5.93259 5.97118 6.02442 6.37541 6.50161 6.59145 6.88790 7.21146 7.47412 8.96920 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.004374 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.998697 B = 6399.373799 C = 6796.378835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.039 3.961 3 O -0.323 6.323 4 C 0.232 3.768 5 C -0.227 4.227 6 C 0.291 3.709 7 N -0.464 5.464 8 C 0.577 3.423 9 O -0.573 6.573 10 N -0.599 5.599 11 C 0.108 3.892 12 C -0.123 4.123 13 C -0.106 4.106 14 C 0.041 3.959 15 H 0.001 0.999 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.015 3.985 19 N -0.911 5.911 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.269 1.269 24 C 0.126 3.874 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.184 0.816 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -6.129 -2.284 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 O -0.232 6.232 4 C 0.158 3.842 5 C -0.236 4.236 6 C -0.022 4.022 7 N -0.144 5.144 8 C 0.364 3.636 9 O -0.453 6.453 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.161 4.161 13 C -0.144 4.144 14 C 0.022 3.978 15 H 0.019 0.981 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.550 5.550 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.194 1.194 24 C 0.004 3.996 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.201 0.799 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.632 -4.969 -1.681 18.396 hybrid contribution 1.692 -0.246 0.258 1.729 sum -15.940 -5.215 -1.423 16.832 Atomic orbital electron populations 1.21853 0.91758 1.04502 1.03104 1.23940 0.97063 0.77499 1.04810 1.86205 1.19281 1.34378 1.83290 1.23456 0.84440 0.95874 0.80395 1.16723 0.89680 0.88483 1.28711 1.25155 0.92388 0.92572 0.92058 1.81177 1.10244 1.10377 1.12578 1.17672 0.86081 0.78289 0.81517 1.90819 1.65855 1.51879 1.36797 1.48459 1.08383 1.51113 1.24999 1.21802 0.94826 0.97147 0.87703 1.21814 0.96247 1.02052 0.95964 1.21528 0.94369 0.99558 0.98898 1.18896 0.93844 0.94356 0.90747 0.98112 1.21467 0.92175 1.28925 1.15040 0.92227 1.25799 1.03089 0.94662 0.94946 1.70030 1.35896 1.31002 1.18025 0.85681 0.80339 0.78247 0.77802 1.19750 1.21344 1.19379 1.21833 0.76023 0.99127 1.02608 0.92233 0.91968 0.87485 0.88451 0.88812 0.79917 0.89293 0.91633 0.88389 0.91675 0.93058 0.92389 0.92985 0.94974 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.29 71.98 0.74 -0.51 16 2 C 0.04 0.37 6.84 71.98 0.49 0.86 16 3 O -0.32 -5.91 9.50 -76.49 -0.73 -6.63 16 4 C 0.23 4.95 10.14 67.37 0.68 5.64 16 5 C -0.23 -6.84 4.67 -20.18 -0.09 -6.94 16 6 C 0.29 9.32 12.44 88.33 1.10 10.42 16 7 N -0.46 -15.98 18.54 19.00 0.35 -15.63 16 8 C 0.58 22.96 7.11 86.54 0.62 23.58 16 9 O -0.57 -27.53 16.53 -4.22 -0.07 -27.60 16 10 N -0.60 -24.26 2.98 -824.06 -2.45 -26.71 16 11 C 0.11 3.46 5.93 86.22 0.51 3.97 16 12 C -0.12 -3.69 6.06 30.53 0.19 -3.50 16 13 C -0.11 -4.03 5.11 30.62 0.16 -3.87 16 14 C 0.04 1.99 2.25 -11.46 -0.03 1.96 16 15 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 16 C -0.54 -28.89 8.56 25.60 0.22 -28.67 16 17 H 0.06 3.10 7.74 -2.92 -0.02 3.08 16 18 C 0.01 0.82 5.30 84.65 0.45 1.27 16 19 N -0.91 -53.14 11.39 21.45 0.24 -52.90 16 20 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.13 6.18 5.39 86.36 0.47 6.65 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.18 2.95 8.00 -2.90 -0.02 2.93 16 31 H 0.09 2.55 4.95 -2.39 -0.01 2.54 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 4.95 5.15 -2.39 -0.01 4.93 16 Total: -1.00 -72.08 331.77 5.92 -66.16 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.05 Total: 7.14 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.50 Total: 10.84 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -1.86 Total: -95.25 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.80 Total: -34.23 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -72.08 5.92 -66.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.962 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds