Wall clock time and date at job start Mon Mar 30 2020 23:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47014 * 2 1 4 4 C 1.34225 * 125.74489 * 125.29480 * 3 2 1 5 5 C 1.38117 * 107.41153 * 180.15839 * 4 3 2 6 6 C 1.47284 * 126.42953 * 179.83165 * 5 4 3 7 7 O 1.21531 * 120.00108 * 179.68510 * 6 5 4 8 8 O 1.34756 * 120.00195 * 359.69047 * 6 5 4 9 9 C 1.45201 * 117.00066 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46659 * 184.74426 * 9 8 6 11 11 C 1.50703 * 115.55413 * 301.70836 * 10 9 8 12 12 H 1.08002 * 119.99901 * 95.21498 * 11 10 9 13 13 C 1.37875 * 119.99910 * 275.21540 * 11 10 9 14 14 N 1.31522 * 119.99850 * 7.12338 * 13 11 10 15 15 Si 1.86797 * 120.00158 * 187.12073 * 13 11 10 16 16 H 1.48501 * 109.47282 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47207 * 300.00115 * 15 13 11 18 18 H 1.48509 * 109.46947 * 60.00247 * 15 13 11 19 19 C 1.53005 * 117.50107 * 87.38140 * 10 9 8 20 20 C 1.53009 * 117.49626 * 156.03656 * 10 9 8 21 21 C 1.41350 * 107.14532 * 359.57155 * 5 4 3 22 22 C 1.50701 * 125.99451 * 180.28488 * 21 5 4 23 23 N 1.30431 * 108.00964 * 0.26351 * 21 5 4 24 24 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99859 * 1 2 3 26 26 H 1.08999 * 109.46610 * 60.00225 * 1 2 3 27 27 H 1.09004 * 109.47662 * 239.99853 * 2 1 3 28 28 H 1.08998 * 109.47339 * 119.99922 * 2 1 3 29 29 H 1.08004 * 126.29775 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.47036 * 64.74857 * 9 8 6 31 31 H 1.09003 * 109.47139 * 304.74167 * 9 8 6 32 32 H 0.96997 * 119.99836 * 355.38815 * 14 13 11 33 33 H 1.08998 * 117.49891 * 215.00280 * 19 10 9 34 34 H 1.09006 * 117.49623 * 0.02562 * 19 10 9 35 35 H 1.08991 * 117.49980 * 359.97438 * 20 10 9 36 36 H 1.09005 * 117.49751 * 144.97272 * 20 10 9 37 37 H 1.08999 * 109.46916 * 89.99797 * 22 21 5 38 38 H 1.08999 * 109.46615 * 209.99763 * 22 21 5 39 39 H 1.09003 * 109.46883 * 329.99751 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9107 0.8892 5 6 3.0706 3.2314 0.5367 6 6 3.9308 4.2033 1.2330 7 8 4.0236 5.3410 0.8159 8 8 4.6150 3.8309 2.3326 9 6 5.4425 4.8411 2.9676 10 6 6.2271 4.2079 4.1184 11 6 5.3940 3.5577 5.1929 12 1 5.1967 2.4966 5.1552 13 6 4.8838 4.3176 6.2240 14 7 5.0037 5.6271 6.1976 15 14 4.0223 3.4874 7.6585 16 1 3.5680 4.5177 8.6266 17 1 2.8488 2.7273 7.1583 18 1 4.9648 2.5571 8.3307 19 6 7.5758 3.5668 3.7854 20 6 7.5259 4.8926 4.5489 21 6 2.2971 3.4738 -0.6213 22 6 2.2055 4.7797 -1.3678 23 7 1.6770 2.3689 -0.9306 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3215 1.3990 1.7280 30 1 4.8088 5.6386 3.3555 31 1 6.1384 5.2528 2.2367 32 1 5.5087 6.0536 5.4877 33 1 7.8605 2.6748 4.3434 34 1 7.9044 3.5965 2.7465 35 1 7.8216 5.7938 4.0119 36 1 7.7776 4.8732 5.6093 37 1 2.9772 4.8135 -2.1368 38 1 1.2238 4.8634 -1.8342 39 1 2.3491 5.6067 -0.6723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860207419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:10 Heat of formation + Delta-G solvation = 2.111657 kcal Electronic energy + Delta-G solvation = -21516.777632 eV Core-core repulsion = 18233.824948 eV Total energy + Delta-G solvation = -3282.952684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39255 -39.29933 -36.95833 -35.33574 -34.78275 -31.89709 -31.55003 -30.25143 -27.90236 -26.76807 -24.82876 -23.84218 -22.34744 -21.36737 -20.55307 -19.53690 -19.27015 -17.34907 -16.83797 -16.43397 -15.87228 -15.39566 -15.26726 -14.40118 -14.14409 -13.92511 -13.74548 -13.34339 -12.99405 -12.93058 -12.57886 -12.46278 -12.23679 -12.18282 -11.95845 -11.73642 -11.61402 -10.91895 -10.81328 -10.80909 -10.50894 -10.12295 -10.00061 -9.86293 -9.54448 -9.35290 -8.66361 -8.54631 -8.47930 -8.34857 -6.36329 -4.09382 1.53687 2.16883 2.24600 3.41742 3.42949 3.44748 3.59474 3.62412 4.20123 4.50211 4.64862 4.73928 4.76709 4.90849 5.04291 5.14284 5.31093 5.33292 5.47925 5.54657 5.66287 5.73802 5.80603 5.84561 5.95981 6.04376 6.09038 6.16044 6.33176 6.46759 6.54376 6.59104 6.79641 6.80278 7.07488 7.18830 7.34948 7.58570 8.21017 8.41115 8.52206 8.85511 9.64184 11.02869 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005004 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.917696 B = 5594.505452 C = 6456.460152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.363 5.363 4 C 0.131 3.869 5 C -0.273 4.273 6 C 0.533 3.467 7 O -0.528 6.528 8 O -0.331 6.331 9 C 0.115 3.885 10 C 0.015 3.985 11 C -0.563 4.563 12 H 0.055 0.945 13 C 0.025 3.975 14 N -0.905 5.905 15 Si 1.067 2.933 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.288 1.288 19 C -0.191 4.191 20 C -0.169 4.169 21 C 0.134 3.866 22 C -0.077 4.077 23 N -0.305 5.305 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.194 0.806 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.273 0.727 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -9.725 -11.799 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.141 5.141 4 C -0.020 4.020 5 C -0.286 4.286 6 C 0.379 3.621 7 O -0.420 6.420 8 O -0.246 6.246 9 C 0.041 3.959 10 C 0.014 3.986 11 C -0.600 4.600 12 H 0.073 0.927 13 C -0.180 4.180 14 N -0.540 5.540 15 Si 0.896 3.104 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.228 4.228 20 C -0.207 4.207 21 C -0.034 4.034 22 C -0.136 4.136 23 N -0.127 5.127 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.211 0.789 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.280 -9.807 -11.277 16.624 hybrid contribution 1.526 0.069 -0.787 1.719 sum -5.753 -9.738 -12.064 16.537 Atomic orbital electron populations 1.22055 0.93484 1.02971 1.03837 1.21825 0.96409 0.76886 1.04268 1.48507 1.34293 1.10529 1.20756 1.23400 0.90839 0.93748 0.94036 1.19467 1.11693 0.94107 1.03351 1.20036 0.77569 0.85793 0.78746 1.90739 1.63745 1.20842 1.66645 1.86581 1.55691 1.44010 1.38292 1.22830 0.91650 0.88811 0.92619 1.19068 0.86105 0.99033 0.94351 1.21165 1.35420 0.95913 1.07545 0.92684 1.25805 0.96528 0.95596 1.00105 1.70758 1.37565 1.09015 1.36657 0.83566 0.76067 0.75088 0.75710 1.20794 1.21492 1.21407 1.22909 1.04911 0.96597 0.98393 1.22788 1.03716 0.94262 0.99917 1.22457 0.92605 0.95135 0.93172 1.20353 1.02445 0.90891 0.99905 1.77082 1.24998 0.96670 1.13908 0.90541 0.91797 0.91034 0.89424 0.88040 0.78904 0.91549 0.94041 0.91570 0.89834 0.91333 0.91236 0.89197 0.90251 0.91044 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.09 37.16 0.37 -0.88 16 2 C 0.13 1.03 7.21 -4.04 -0.03 1.00 16 3 N -0.36 -4.63 3.65 -60.80 -0.22 -4.85 16 4 C 0.13 1.88 11.29 -16.55 -0.19 1.69 16 5 C -0.27 -4.74 6.13 -105.08 -0.64 -5.38 16 6 C 0.53 11.01 7.95 34.41 0.27 11.29 16 7 O -0.53 -11.63 14.65 -19.29 -0.28 -11.92 16 8 O -0.33 -7.45 9.86 -40.64 -0.40 -7.85 16 9 C 0.11 2.72 5.31 37.16 0.20 2.92 16 10 C 0.02 0.37 1.20 -155.65 -0.19 0.18 16 11 C -0.56 -15.31 8.64 -34.44 -0.30 -15.61 16 12 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.03 0.69 5.39 -17.82 -0.10 0.60 16 14 N -0.91 -26.51 13.57 55.43 0.75 -25.76 16 15 Si 1.07 24.58 29.91 -169.99 -5.08 19.49 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.19 -4.10 9.94 -26.69 -0.27 -4.37 16 20 C -0.17 -3.83 8.75 -26.69 -0.23 -4.07 16 21 C 0.13 2.12 7.27 -82.00 -0.60 1.52 16 22 C -0.08 -1.04 9.92 36.01 0.36 -0.69 16 23 N -0.30 -4.53 12.33 33.91 0.42 -4.11 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.59 8.06 -51.93 -0.42 0.17 16 29 H 0.19 2.36 8.06 -52.48 -0.42 1.94 16 30 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 31 H 0.04 0.92 8.01 -51.93 -0.42 0.51 16 32 H 0.27 7.93 6.15 -40.82 -0.25 7.68 16 33 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.44 6.55 -51.93 -0.34 1.10 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -32.79 338.20 -6.74 -39.53 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.69 Total: 2.17 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.33 Total: -11.80 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.95 Total: -34.72 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.68 Total: -19.77 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.79 -6.74 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860207419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.640 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds