Wall clock time and date at job start Mon Mar 30 2020 23:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47014 * 2 1 4 4 C 1.34225 * 125.74489 * 125.29480 * 3 2 1 5 5 C 1.38117 * 107.41153 * 180.15839 * 4 3 2 6 6 C 1.47284 * 126.42953 * 179.83165 * 5 4 3 7 7 O 1.21531 * 120.00108 * 179.68510 * 6 5 4 8 8 O 1.34756 * 120.00195 * 359.69047 * 6 5 4 9 9 C 1.45201 * 117.00066 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46659 * 184.74426 * 9 8 6 11 11 C 1.50703 * 115.55413 * 301.70836 * 10 9 8 12 12 H 1.08002 * 119.99901 * 95.21498 * 11 10 9 13 13 C 1.37875 * 119.99910 * 275.21540 * 11 10 9 14 14 N 1.31522 * 119.99850 * 7.12338 * 13 11 10 15 15 Si 1.86797 * 120.00158 * 187.12073 * 13 11 10 16 16 H 1.48501 * 109.47282 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47207 * 300.00115 * 15 13 11 18 18 H 1.48509 * 109.46947 * 60.00247 * 15 13 11 19 19 C 1.53005 * 117.50107 * 87.38140 * 10 9 8 20 20 C 1.53009 * 117.49626 * 156.03656 * 10 9 8 21 21 C 1.41350 * 107.14532 * 359.57155 * 5 4 3 22 22 C 1.50701 * 125.99451 * 180.28488 * 21 5 4 23 23 N 1.30431 * 108.00964 * 0.26351 * 21 5 4 24 24 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99859 * 1 2 3 26 26 H 1.08999 * 109.46610 * 60.00225 * 1 2 3 27 27 H 1.09004 * 109.47662 * 239.99853 * 2 1 3 28 28 H 1.08998 * 109.47339 * 119.99922 * 2 1 3 29 29 H 1.08004 * 126.29775 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.47036 * 64.74857 * 9 8 6 31 31 H 1.09003 * 109.47139 * 304.74167 * 9 8 6 32 32 H 0.96997 * 119.99836 * 355.38815 * 14 13 11 33 33 H 1.08998 * 117.49891 * 215.00280 * 19 10 9 34 34 H 1.09006 * 117.49623 * 0.02562 * 19 10 9 35 35 H 1.08991 * 117.49980 * 359.97438 * 20 10 9 36 36 H 1.09005 * 117.49751 * 144.97272 * 20 10 9 37 37 H 1.08999 * 109.46916 * 89.99797 * 22 21 5 38 38 H 1.08999 * 109.46615 * 209.99763 * 22 21 5 39 39 H 1.09003 * 109.46883 * 329.99751 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9107 0.8892 5 6 3.0706 3.2314 0.5367 6 6 3.9308 4.2033 1.2330 7 8 4.0236 5.3410 0.8159 8 8 4.6150 3.8309 2.3326 9 6 5.4425 4.8411 2.9676 10 6 6.2271 4.2079 4.1184 11 6 5.3940 3.5577 5.1929 12 1 5.1967 2.4966 5.1552 13 6 4.8838 4.3176 6.2240 14 7 5.0037 5.6271 6.1976 15 14 4.0223 3.4874 7.6585 16 1 3.5680 4.5177 8.6266 17 1 2.8488 2.7273 7.1583 18 1 4.9648 2.5571 8.3307 19 6 7.5758 3.5668 3.7854 20 6 7.5259 4.8926 4.5489 21 6 2.2971 3.4738 -0.6213 22 6 2.2055 4.7797 -1.3678 23 7 1.6770 2.3689 -0.9306 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3215 1.3990 1.7280 30 1 4.8088 5.6386 3.3555 31 1 6.1384 5.2528 2.2367 32 1 5.5087 6.0536 5.4877 33 1 7.8605 2.6748 4.3434 34 1 7.9044 3.5965 2.7465 35 1 7.8216 5.7938 4.0119 36 1 7.7776 4.8732 5.6093 37 1 2.9772 4.8135 -2.1368 38 1 1.2238 4.8634 -1.8342 39 1 2.3491 5.6067 -0.6723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860207419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:09 Heat of formation + Delta-G solvation = -16.365109 kcal Electronic energy + Delta-G solvation = -21517.578845 eV Core-core repulsion = 18233.824948 eV Total energy + Delta-G solvation = -3283.753897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55526 -40.94122 -38.76717 -36.97985 -35.77207 -33.96054 -32.53947 -31.43686 -29.06928 -28.37971 -26.89884 -24.94506 -23.44590 -23.09500 -21.86822 -21.46185 -20.51000 -18.81021 -18.60364 -17.87330 -17.32412 -16.82496 -16.49131 -15.82870 -15.59333 -15.31019 -15.03059 -14.89589 -14.56461 -14.11889 -14.01891 -13.85858 -13.70658 -13.22927 -13.08397 -12.88568 -12.80426 -12.62507 -12.39654 -12.25622 -11.93700 -11.90372 -11.74987 -11.59121 -11.28098 -10.50582 -10.44705 -10.43230 -10.33430 -9.84707 -8.52851 -6.26131 0.29686 0.91630 1.26589 1.56263 1.63509 1.82372 1.86895 2.12485 2.61031 3.18842 3.23333 3.28752 3.67062 3.90992 3.96984 4.03182 4.05840 4.18948 4.23944 4.33075 4.35449 4.42110 4.50361 4.68403 4.70930 4.76653 4.78678 4.80813 4.89838 4.96839 4.99765 5.21169 5.23589 5.39767 5.42546 5.66783 5.81066 6.16542 6.25703 6.43175 6.69849 6.89033 7.54885 8.87248 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.005004 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.917696 B = 5594.505452 C = 6456.460152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.350 5.350 4 C 0.146 3.854 5 C -0.311 4.311 6 C 0.530 3.470 7 O -0.552 6.552 8 O -0.340 6.340 9 C 0.126 3.874 10 C -0.020 4.020 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.022 4.022 14 N -0.934 5.934 15 Si 1.109 2.891 16 H -0.289 1.289 17 H -0.273 1.273 18 H -0.268 1.268 19 C -0.164 4.164 20 C -0.167 4.167 21 C 0.125 3.875 22 C -0.075 4.075 23 N -0.312 5.312 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.215 0.785 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -12.347 -12.392 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.127 5.127 4 C -0.007 4.007 5 C -0.324 4.324 6 C 0.377 3.623 7 O -0.445 6.445 8 O -0.255 6.255 9 C 0.052 3.948 10 C -0.020 4.020 11 C -0.606 4.606 12 H 0.068 0.932 13 C -0.222 4.222 14 N -0.571 5.571 15 Si 0.932 3.068 16 H -0.215 1.215 17 H -0.199 1.199 18 H -0.193 1.193 19 C -0.201 4.201 20 C -0.205 4.205 21 C -0.042 4.042 22 C -0.134 4.134 23 N -0.134 5.134 24 H 0.125 0.875 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.232 0.768 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.634 -12.469 -11.909 18.857 hybrid contribution 1.590 0.774 -0.687 1.897 sum -6.044 -11.695 -12.596 18.220 Atomic orbital electron populations 1.22035 0.93013 1.04494 1.02349 1.22375 0.96813 0.74549 1.06752 1.48972 1.32856 1.11600 1.19287 1.23655 0.90144 0.92777 0.94170 1.19456 1.13195 0.95013 1.04762 1.20593 0.77333 0.86298 0.78054 1.90714 1.64645 1.22015 1.67124 1.86572 1.56099 1.43627 1.39202 1.22509 0.91293 0.88264 0.92714 1.19149 0.87093 1.01152 0.94643 1.21437 1.35318 0.95732 1.08145 0.93203 1.27098 0.97024 0.95475 1.02574 1.70864 1.39189 1.10071 1.36944 0.83031 0.76092 0.74572 0.73107 1.21506 1.19888 1.19328 1.22936 1.01610 0.95938 0.99591 1.22735 1.02515 0.95820 0.99419 1.22734 0.92377 0.96113 0.92976 1.20360 1.04055 0.89379 0.99562 1.77057 1.24907 0.96805 1.14612 0.87528 0.93146 0.92594 0.87474 0.85069 0.76809 0.94899 0.92916 0.92679 0.89300 0.88884 0.89650 0.90872 0.89134 0.88964 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 10.09 71.98 0.73 -1.27 16 2 C 0.11 1.44 7.21 86.38 0.62 2.07 16 3 N -0.35 -8.11 3.65 -346.26 -1.26 -9.37 16 4 C 0.15 3.93 11.29 84.30 0.95 4.88 16 5 C -0.31 -10.69 6.13 -20.16 -0.12 -10.81 16 6 C 0.53 22.24 7.95 70.20 0.56 22.80 16 7 O -0.55 -25.07 14.65 19.74 0.29 -24.78 16 8 O -0.34 -15.43 9.86 -56.67 -0.56 -15.99 16 9 C 0.13 6.10 5.31 71.98 0.38 6.48 16 10 C -0.02 -0.97 1.20 -52.92 -0.06 -1.04 16 11 C -0.57 -30.94 8.64 25.60 0.22 -30.72 16 12 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 13 C -0.02 -1.24 5.39 84.65 0.46 -0.79 16 14 N -0.93 -55.84 13.57 21.45 0.29 -55.55 16 15 Si 1.11 49.13 29.91 68.60 2.05 51.18 16 16 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 C -0.16 -6.75 9.94 30.62 0.30 -6.45 16 20 C -0.17 -7.51 8.75 30.62 0.27 -7.24 16 21 C 0.13 3.89 7.27 43.53 0.32 4.21 16 22 C -0.08 -2.01 9.92 71.24 0.71 -1.31 16 23 N -0.31 -8.79 12.33 -46.64 -0.58 -9.37 16 24 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.13 0.95 8.06 -2.39 -0.02 0.93 16 29 H 0.22 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.03 1.77 7.76 -2.39 -0.02 1.75 16 31 H 0.05 2.37 8.01 -2.39 -0.02 2.35 16 32 H 0.26 15.76 6.15 -92.71 -0.57 15.19 16 33 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.07 3.50 8.14 -2.38 -0.02 3.48 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.34 6.55 -2.39 -0.02 2.32 16 Total: -1.00 -71.82 338.20 6.80 -65.03 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.24 Total: 18.04 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 5.33 Total: -19.19 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.55 Total: -74.29 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.27 Total: -40.77 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.05 Total: 51.18 kcal Total: -71.82 6.80 -65.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860207419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.660 kcal (2) G-P(sol) polarization free energy of solvation -71.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds