Wall clock time and date at job start Tue Mar 31 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46961 * 2 1 4 4 C 1.34680 * 116.99809 * 179.97438 * 3 2 1 5 5 O 1.21430 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.48074 * 120.00124 * 179.97438 * 4 3 2 7 7 C 1.39343 * 119.72886 * 180.02562 * 6 4 3 8 8 C 1.38584 * 119.05585 * 179.97438 * 7 6 4 9 9 C 1.38621 * 118.49337 * 359.72578 * 8 7 6 10 10 C 1.38587 * 119.35601 * 0.53428 * 9 8 7 11 11 C 1.50700 * 119.55022 * 179.73158 * 10 9 8 12 12 N 1.46898 * 109.47068 * 94.72734 * 11 10 9 13 13 C 1.46897 * 111.00161 * 66.05192 * 12 11 10 14 14 C 1.46906 * 110.99890 * 190.00323 * 12 11 10 15 15 C 1.50699 * 109.47140 * 170.00136 * 14 12 11 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99892 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47135 * 90.00125 * 19 17 15 21 21 H 1.48503 * 109.47215 * 210.00315 * 19 17 15 22 22 H 1.48508 * 109.46958 * 330.00276 * 19 17 15 23 23 N 1.31503 * 120.90566 * 359.45394 * 10 9 8 24 24 H 1.09002 * 109.47091 * 60.00492 * 1 2 3 25 25 H 1.08992 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47278 * 300.00313 * 1 2 3 27 27 H 1.09001 * 109.47278 * 239.99687 * 2 1 3 28 28 H 1.09001 * 109.46628 * 119.99768 * 2 1 3 29 29 H 1.08001 * 120.46981 * 359.94982 * 7 6 4 30 30 H 1.08008 * 120.75483 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.32862 * 180.26567 * 9 8 7 32 32 H 1.09004 * 109.46926 * 334.72737 * 11 10 9 33 33 H 1.08994 * 109.46958 * 214.73266 * 11 10 9 34 34 H 1.08997 * 109.47293 * 183.95420 * 13 12 11 35 35 H 1.09000 * 109.46769 * 303.95193 * 13 12 11 36 36 H 1.08999 * 109.47106 * 63.94333 * 13 12 11 37 37 H 1.09004 * 109.47040 * 290.00074 * 14 12 11 38 38 H 1.09000 * 109.47033 * 50.00026 * 14 12 11 39 39 H 0.97002 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3492 1.5454 0.0005 5 8 4.0889 0.5824 0.0015 6 6 3.9152 2.9137 0.0000 7 6 5.2974 3.0897 0.0000 8 6 5.8121 4.3764 -0.0010 9 6 4.9265 5.4429 -0.0079 10 6 3.5632 5.1939 -0.0022 11 6 2.5965 6.3500 -0.0035 12 7 2.1901 6.6470 -1.3835 13 6 1.4109 5.5394 -1.9527 14 6 1.4398 7.9081 -1.4516 15 6 1.2535 8.3046 -2.8935 16 1 1.6530 7.6823 -3.6806 17 6 0.5740 9.4624 -3.2078 18 7 0.4111 9.8082 -4.4661 19 14 -0.1163 10.5392 -1.8463 20 1 0.9026 11.5414 -1.4432 21 1 -1.3315 11.2382 -2.3362 22 1 -0.4688 9.6939 -0.6773 23 7 3.1014 3.9626 -0.0012 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9583 2.2355 0.0012 30 1 6.8790 4.5446 -0.0015 31 1 5.2953 6.4580 -0.0132 32 1 3.0780 7.2266 0.4301 33 1 1.7176 6.0894 0.5861 34 1 1.1828 5.7545 -2.9967 35 1 1.9897 4.6180 -1.8897 36 1 0.4821 5.4239 -1.3941 37 1 0.4648 7.7766 -0.9821 38 1 1.9926 8.6885 -0.9287 39 1 -0.0667 10.6229 -4.6873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862211210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:34 Heat of formation + Delta-G solvation = -38.569097 kcal Electronic energy + Delta-G solvation = -21161.032374 eV Core-core repulsion = 17876.315640 eV Total energy + Delta-G solvation = -3284.716734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93257 -39.79414 -36.88192 -36.49523 -32.87989 -32.75433 -31.92116 -31.49072 -28.08404 -27.06782 -25.46531 -24.12112 -23.19058 -21.99326 -21.11219 -20.12931 -18.34129 -17.15320 -16.78614 -16.71804 -16.25245 -15.91328 -15.13446 -14.73512 -14.34127 -14.20948 -14.04277 -13.58192 -13.30232 -13.22229 -12.95141 -12.55748 -12.28968 -12.10010 -11.92109 -11.83865 -11.70848 -11.17037 -10.95770 -10.94369 -10.68454 -10.55115 -10.42860 -9.99990 -9.92915 -9.55036 -9.29788 -9.13484 -8.57343 -7.42501 -6.05366 -4.03007 0.45334 1.12626 2.31678 2.41218 3.27776 3.35678 3.37229 3.68776 3.96973 4.41366 4.56596 4.65576 4.74101 4.79046 4.88840 4.91193 5.02265 5.05646 5.26354 5.27459 5.47529 5.51456 5.60149 5.64062 5.80264 5.93068 5.96580 6.06129 6.22710 6.23436 6.39362 6.47433 6.75641 6.88545 6.98654 7.45046 7.55168 7.83162 7.89115 7.99887 8.64174 9.03408 9.55756 11.07744 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.004087 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.288427 B = 6849.146264 C = 7777.627179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.330 6.330 4 C 0.529 3.471 5 O -0.507 6.507 6 C 0.084 3.916 7 C -0.114 4.114 8 C -0.086 4.086 9 C -0.116 4.116 10 C 0.148 3.852 11 C 0.096 3.904 12 N -0.526 5.526 13 C 0.039 3.961 14 C 0.162 3.838 15 C -0.509 4.509 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 N -0.428 5.428 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.016 0.984 37 H -0.008 1.008 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 -15.483 12.108 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.246 6.246 4 C 0.373 3.627 5 O -0.395 6.395 6 C -0.053 4.053 7 C -0.134 4.134 8 C -0.111 4.111 9 C -0.137 4.137 10 C 0.007 3.993 11 C -0.033 4.033 12 N -0.250 5.250 13 C -0.109 4.109 14 C 0.036 3.964 15 C -0.547 4.547 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 N -0.140 5.140 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.009 0.991 38 H 0.043 0.957 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.285 -15.782 11.706 20.630 hybrid contribution -0.194 0.554 1.022 1.178 sum 6.091 -15.228 12.728 20.760 Atomic orbital electron populations 1.21800 0.92333 1.02821 1.04027 1.23101 0.95737 0.80076 1.02480 1.86719 1.22927 1.31900 1.83009 1.20839 0.81030 0.88536 0.72336 1.90823 1.60783 1.41522 1.46352 1.19937 0.90348 0.90493 1.04486 1.21993 0.94444 0.98960 0.98017 1.21590 1.00893 0.91578 0.97058 1.22356 0.93747 1.01030 0.96535 1.21412 0.92961 0.91571 0.93357 1.21056 0.96078 0.93085 0.93089 1.62019 1.44238 1.04472 1.14271 1.22262 0.94948 0.92865 1.00872 1.20219 0.91032 0.86351 0.98753 1.21009 1.34982 1.08019 0.90690 0.90132 1.24889 0.95767 0.97369 0.95266 1.69893 1.42421 1.24791 1.16821 0.86874 0.79024 0.81081 0.82850 1.20126 1.21205 1.19212 1.67518 1.39285 0.98711 1.08512 0.91096 0.90269 0.91348 0.91114 0.91255 0.83604 0.83703 0.83560 0.89361 0.93419 0.90617 0.92730 0.96532 0.99073 0.95694 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.33 -4.63 10.04 -40.44 -0.41 -5.04 16 4 C 0.53 7.71 7.95 34.77 0.28 7.98 16 5 O -0.51 -7.68 16.11 -19.21 -0.31 -7.99 16 6 C 0.08 1.21 6.75 -83.02 -0.56 0.65 16 7 C -0.11 -1.34 9.63 -39.04 -0.38 -1.71 16 8 C -0.09 -0.89 10.17 -39.31 -0.40 -1.29 16 9 C -0.12 -1.42 9.73 -39.31 -0.38 -1.80 16 10 C 0.15 2.25 5.71 -82.60 -0.47 1.78 16 11 C 0.10 1.60 5.27 -4.98 -0.03 1.58 16 12 N -0.53 -10.97 4.74 -245.83 -1.17 -12.13 16 13 C 0.04 0.80 9.11 60.06 0.55 1.34 16 14 C 0.16 3.87 3.79 -4.97 -0.02 3.85 16 15 C -0.51 -14.34 9.07 -34.44 -0.31 -14.65 16 16 H 0.08 2.49 7.35 -52.48 -0.39 2.10 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 19 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 23 N -0.43 -6.83 8.50 -6.07 -0.05 -6.89 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.15 1.47 7.64 -52.49 -0.40 1.07 16 30 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.09 1.30 7.83 -51.93 -0.41 0.89 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 34 H 0.08 1.70 6.86 -51.93 -0.36 1.34 16 35 H 0.05 1.06 6.12 -51.93 -0.32 0.74 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H -0.01 -0.20 7.18 -51.93 -0.37 -0.58 16 38 H 0.03 0.58 7.36 -51.93 -0.38 0.19 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -32.69 332.42 -7.62 -40.31 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.59 Total: -2.68 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.21 Total: -0.42 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.44 Total: -45.67 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.72 Total: -13.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.69 -7.62 -40.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862211210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.738 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds