Wall clock time and date at job start Tue Mar 31 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00138 * 2 1 4 4 C 1.46908 * 110.99813 * 123.95212 * 2 1 3 5 5 C 1.52996 * 109.46977 * 75.99193 * 4 2 1 6 6 O 1.42901 * 109.47223 * 63.76476 * 5 4 2 7 7 N 1.41596 * 113.99759 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99874 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.47439 * 120.00011 * 179.97438 * 8 7 6 11 11 C 1.39224 * 120.28377 * 355.53046 * 10 8 7 12 12 C 1.38218 * 120.09089 * 180.27853 * 11 10 8 13 13 C 1.38823 * 120.67897 * 359.69768 * 12 11 10 14 14 C 1.37596 * 120.56569 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88459 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32753 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99767 * 217.51447 * 16 15 14 18 18 C 1.40271 * 119.99678 * 37.51582 * 16 15 14 19 19 N 1.30630 * 119.99758 * 189.91819 * 18 16 15 20 20 Si 1.86803 * 120.00326 * 9.91551 * 18 16 15 21 21 H 1.48493 * 109.47035 * 266.52834 * 20 18 16 22 22 H 1.48492 * 109.46852 * 26.53218 * 20 18 16 23 23 H 1.48503 * 109.46889 * 146.53278 * 20 18 16 24 24 H 1.08998 * 109.47166 * 296.04682 * 1 2 3 25 25 H 1.08998 * 109.46749 * 56.05257 * 1 2 3 26 26 H 1.08998 * 109.46958 * 176.04305 * 1 2 3 27 27 H 1.08994 * 109.47442 * 188.81448 * 3 2 1 28 28 H 1.09001 * 109.46698 * 308.81563 * 3 2 1 29 29 H 1.09003 * 109.47274 * 68.81279 * 3 2 1 30 30 H 1.08999 * 109.46922 * 315.99373 * 4 2 1 31 31 H 1.09005 * 109.46969 * 195.99471 * 4 2 1 32 32 H 1.09005 * 109.46990 * 303.75926 * 5 4 2 33 33 H 1.09000 * 109.46992 * 183.76099 * 5 4 2 34 34 H 0.97001 * 120.00581 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.94994 * 359.97438 * 11 10 8 36 36 H 1.08006 * 119.66039 * 179.71992 * 12 11 10 37 37 H 1.07993 * 119.71705 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.05934 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.8522 -2.2627 0.8547 6 8 2.6562 -2.6133 -0.2734 7 7 2.5949 -3.9848 -0.6204 8 6 3.3067 -4.4475 -1.6672 9 8 4.0019 -3.6873 -2.3134 10 6 3.2433 -5.8756 -2.0281 11 6 2.5247 -6.7684 -1.2375 12 6 2.4727 -8.1074 -1.5765 13 6 3.1270 -8.5778 -2.7068 14 6 3.8395 -7.7186 -3.5113 15 6 3.9083 -6.3508 -3.1886 16 6 4.6357 -5.4627 -4.0055 17 1 5.1997 -4.6573 -3.5590 18 6 4.6272 -5.6249 -5.3988 19 7 5.4474 -4.9312 -6.1421 20 14 3.4431 -6.8329 -6.1915 21 1 4.1171 -8.1444 -6.3660 22 1 2.2513 -7.0006 -5.3218 23 1 3.0198 -6.3137 -7.5168 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0737 1.3467 -0.1575 28 1 1.5243 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.4355 -0.5111 2.0375 31 1 3.0480 -0.5228 1.2836 32 1 0.8083 -2.4942 0.6430 33 1 2.1808 -2.8302 1.7254 34 1 2.0406 -4.5913 -0.1047 35 1 2.0113 -6.4149 -0.3555 36 1 1.9169 -8.7946 -0.9557 37 1 3.0757 -9.6271 -2.9572 38 1 4.3452 -8.0934 -4.3890 39 1 5.4413 -5.0430 -7.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868628482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:58 Heat of formation + Delta-G solvation = 6.199156 kcal Electronic energy + Delta-G solvation = -21344.001131 eV Core-core repulsion = 18061.225694 eV Total energy + Delta-G solvation = -3282.775437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.92917 -38.06064 -36.97096 -35.86625 -33.69237 -32.00397 -30.46705 -30.12521 -28.69052 -27.70778 -25.33083 -24.14262 -22.47737 -21.27199 -21.13888 -19.52685 -17.97597 -17.24178 -16.48154 -16.19949 -15.38659 -15.21623 -14.91713 -14.47036 -14.29057 -14.10250 -13.61318 -13.36702 -13.21767 -12.71275 -12.61936 -12.56840 -12.35360 -12.03082 -11.81768 -11.77641 -11.51025 -11.20062 -10.95118 -10.72631 -10.53782 -10.43550 -10.15020 -9.81588 -9.25496 -8.52258 -8.39751 -8.13625 -7.83983 -7.59395 -6.87999 -4.47938 2.09235 2.57334 2.59589 3.10071 3.19624 3.30540 3.78226 3.96831 4.05403 4.62118 4.71828 4.87401 5.04084 5.09002 5.18669 5.26202 5.37628 5.39388 5.48217 5.50959 5.67146 5.74941 5.78979 5.81550 5.86177 6.00886 6.31366 6.48251 6.77102 6.86614 6.90605 7.08001 7.19562 7.35374 7.54512 7.55457 7.72700 7.99107 8.25840 8.49824 8.62130 8.86950 9.44667 10.08797 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.004602 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.191928 B = 6083.252661 C = 6973.094827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.027 3.973 4 C 0.062 3.938 5 C 0.038 3.962 6 O -0.132 6.132 7 N -0.617 5.617 8 C 0.572 3.428 9 O -0.507 6.507 10 C -0.239 4.239 11 C -0.043 4.043 12 C -0.253 4.253 13 C -0.065 4.065 14 C -0.221 4.221 15 C 0.118 3.882 16 C -0.400 4.400 17 H 0.124 0.876 18 C 0.079 3.921 19 N -0.790 5.790 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.241 1.241 23 H -0.287 1.287 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.394 0.606 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 3.990 11.764 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.040 4.040 6 O -0.135 6.135 7 N -0.323 5.323 8 C 0.366 3.634 9 O -0.381 6.381 10 C -0.244 4.244 11 C -0.062 4.062 12 C -0.272 4.272 13 C -0.084 4.084 14 C -0.240 4.240 15 C 0.113 3.887 16 C -0.427 4.427 17 H 0.142 0.858 18 C -0.142 4.142 19 N -0.413 5.413 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.164 1.164 23 H -0.215 1.215 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.431 4.620 10.483 14.224 hybrid contribution -1.283 -0.355 0.843 1.576 sum -9.714 4.266 11.326 15.519 Atomic orbital electron populations 1.22454 0.87402 1.02415 1.00236 1.61845 1.07770 1.13941 1.42814 1.22387 1.01449 0.88377 0.99896 1.22093 1.01587 0.91569 0.91476 1.22881 0.95768 0.95609 0.89771 1.90670 1.67180 1.07091 1.48581 1.47897 1.52578 0.97190 1.34617 1.18412 0.78895 0.88262 0.77868 1.90756 1.39664 1.57795 1.49849 1.19138 1.11214 0.89412 1.04625 1.20769 0.95544 0.93682 0.96205 1.20273 1.10357 0.95053 1.01536 1.20746 0.95356 0.97753 0.94547 1.21142 1.06833 0.93566 1.02418 1.17486 0.88607 0.91573 0.91008 1.20209 1.20683 1.11347 0.90447 0.85831 1.26376 0.94835 0.95150 0.97797 1.69568 1.29949 1.34242 1.07550 0.86392 0.82663 0.79715 0.78089 1.19360 1.16420 1.21459 0.95919 0.91204 0.91299 0.90964 0.91300 0.95952 0.92626 0.89599 0.92684 0.92357 0.76652 0.88813 0.88410 0.88436 0.87613 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.39 60.07 0.56 0.80 16 2 N -0.54 -6.82 4.88 -251.26 -1.23 -8.05 16 3 C 0.03 0.28 9.52 60.06 0.57 0.85 16 4 C 0.06 0.70 5.39 -3.82 -0.02 0.68 16 5 C 0.04 0.49 6.41 37.16 0.24 0.73 16 6 O -0.13 -2.51 11.04 -29.61 -0.33 -2.83 16 7 N -0.62 -11.95 6.34 30.44 0.19 -11.76 16 8 C 0.57 13.93 7.87 -12.51 -0.10 13.83 16 9 O -0.51 -14.67 13.96 -12.87 -0.18 -14.85 16 10 C -0.24 -5.67 5.92 -104.37 -0.62 -6.29 16 11 C -0.04 -0.85 9.52 -39.22 -0.37 -1.22 16 12 C -0.25 -4.87 10.03 -39.37 -0.39 -5.26 16 13 C -0.07 -1.34 10.01 -39.60 -0.40 -1.73 16 14 C -0.22 -5.17 6.98 -38.88 -0.27 -5.44 16 15 C 0.12 3.06 5.00 -106.54 -0.53 2.53 16 16 C -0.40 -11.42 8.27 -37.81 -0.31 -11.73 16 17 H 0.12 3.93 6.02 -52.49 -0.32 3.62 16 18 C 0.08 2.14 5.48 -17.30 -0.09 2.05 16 19 N -0.79 -21.76 13.92 55.56 0.77 -20.99 16 20 Si 0.91 20.77 24.55 -169.99 -4.17 16.59 16 21 H -0.27 -5.79 6.82 56.52 0.39 -5.41 16 22 H -0.24 -5.64 6.69 56.52 0.38 -5.26 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.02 0.19 8.09 -51.93 -0.42 -0.23 16 25 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 26 H 0.07 0.72 6.83 -51.93 -0.35 0.37 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 29 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 30 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 31 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.05 0.64 6.83 -51.93 -0.35 0.29 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.39 6.06 6.59 -40.82 -0.27 5.79 16 35 H 0.09 1.47 6.42 -52.48 -0.34 1.13 16 36 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 2.43 5.15 -52.48 -0.27 2.16 16 39 H 0.29 7.08 8.29 -40.82 -0.34 6.74 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -33.02 321.84 -7.10 -40.12 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.27 Total: 7.14 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.74 Total: -10.22 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.26 Total: -40.80 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.51 Total: -17.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.59 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.02 -7.10 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868628482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.321 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds