Wall clock time and date at job start Tue Mar 31 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00138 * 2 1 4 4 C 1.46908 * 110.99813 * 123.95212 * 2 1 3 5 5 C 1.52996 * 109.46977 * 75.99193 * 4 2 1 6 6 O 1.42901 * 109.47223 * 63.76476 * 5 4 2 7 7 N 1.41596 * 113.99759 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99874 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.47439 * 120.00011 * 179.97438 * 8 7 6 11 11 C 1.39224 * 120.28377 * 355.53046 * 10 8 7 12 12 C 1.38218 * 120.09089 * 180.27853 * 11 10 8 13 13 C 1.38823 * 120.67897 * 359.69768 * 12 11 10 14 14 C 1.37596 * 120.56569 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88459 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32753 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99767 * 217.51447 * 16 15 14 18 18 C 1.40271 * 119.99678 * 37.51582 * 16 15 14 19 19 N 1.30630 * 119.99758 * 189.91819 * 18 16 15 20 20 Si 1.86803 * 120.00326 * 9.91551 * 18 16 15 21 21 H 1.48493 * 109.47035 * 266.52834 * 20 18 16 22 22 H 1.48492 * 109.46852 * 26.53218 * 20 18 16 23 23 H 1.48503 * 109.46889 * 146.53278 * 20 18 16 24 24 H 1.08998 * 109.47166 * 296.04682 * 1 2 3 25 25 H 1.08998 * 109.46749 * 56.05257 * 1 2 3 26 26 H 1.08998 * 109.46958 * 176.04305 * 1 2 3 27 27 H 1.08994 * 109.47442 * 188.81448 * 3 2 1 28 28 H 1.09001 * 109.46698 * 308.81563 * 3 2 1 29 29 H 1.09003 * 109.47274 * 68.81279 * 3 2 1 30 30 H 1.08999 * 109.46922 * 315.99373 * 4 2 1 31 31 H 1.09005 * 109.46969 * 195.99471 * 4 2 1 32 32 H 1.09005 * 109.46990 * 303.75926 * 5 4 2 33 33 H 1.09000 * 109.46992 * 183.76099 * 5 4 2 34 34 H 0.97001 * 120.00581 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.94994 * 359.97438 * 11 10 8 36 36 H 1.08006 * 119.66039 * 179.71992 * 12 11 10 37 37 H 1.07993 * 119.71705 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.05934 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.8522 -2.2627 0.8547 6 8 2.6562 -2.6133 -0.2734 7 7 2.5949 -3.9848 -0.6204 8 6 3.3067 -4.4475 -1.6672 9 8 4.0019 -3.6873 -2.3134 10 6 3.2433 -5.8756 -2.0281 11 6 2.5247 -6.7684 -1.2375 12 6 2.4727 -8.1074 -1.5765 13 6 3.1270 -8.5778 -2.7068 14 6 3.8395 -7.7186 -3.5113 15 6 3.9083 -6.3508 -3.1886 16 6 4.6357 -5.4627 -4.0055 17 1 5.1997 -4.6573 -3.5590 18 6 4.6272 -5.6249 -5.3988 19 7 5.4474 -4.9312 -6.1421 20 14 3.4431 -6.8329 -6.1915 21 1 4.1171 -8.1444 -6.3660 22 1 2.2513 -7.0006 -5.3218 23 1 3.0198 -6.3137 -7.5168 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0737 1.3467 -0.1575 28 1 1.5243 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.4355 -0.5111 2.0375 31 1 3.0480 -0.5228 1.2836 32 1 0.8083 -2.4942 0.6430 33 1 2.1808 -2.8302 1.7254 34 1 2.0406 -4.5913 -0.1047 35 1 2.0113 -6.4149 -0.3555 36 1 1.9169 -8.7946 -0.9557 37 1 3.0757 -9.6271 -2.9572 38 1 4.3452 -8.0934 -4.3890 39 1 5.4413 -5.0430 -7.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868628482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:58 Heat of formation + Delta-G solvation = -18.717422 kcal Electronic energy + Delta-G solvation = -21345.081595 eV Core-core repulsion = 18061.225694 eV Total energy + Delta-G solvation = -3283.855901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69992 -39.25270 -38.51783 -37.33999 -35.56457 -33.66770 -32.29077 -31.53241 -30.03549 -28.51036 -27.18628 -25.10555 -24.22600 -22.94663 -22.23847 -21.21488 -19.66701 -18.90421 -18.14798 -17.20576 -17.15374 -16.33003 -15.94751 -15.90465 -15.81083 -15.77562 -15.35339 -14.86776 -14.69511 -14.42607 -14.03014 -13.80131 -13.51593 -13.29806 -13.26906 -12.73383 -12.68755 -12.64123 -12.52317 -12.21727 -12.14301 -12.02788 -11.76644 -11.59836 -11.08169 -10.41461 -9.80706 -9.50338 -9.40544 -9.26212 -8.80483 -6.48802 0.32817 0.84879 1.10969 1.25830 1.40064 1.49253 2.12541 2.25705 2.72389 2.95772 3.52210 3.65559 3.94928 4.08791 4.15677 4.21957 4.23490 4.39482 4.42729 4.45838 4.52685 4.60931 4.70858 4.71134 4.78673 4.83798 4.98143 4.99729 5.00349 5.30442 5.43531 5.67252 5.85412 5.93267 5.96088 6.05016 6.12354 6.27959 6.50112 6.61317 6.77299 6.85419 7.68057 8.24610 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019865 B = 0.004602 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.191928 B = 6083.252661 C = 6973.094827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.578 5.578 3 C 0.029 3.971 4 C 0.064 3.936 5 C 0.029 3.971 6 O -0.166 6.166 7 N -0.595 5.595 8 C 0.565 3.435 9 O -0.569 6.569 10 C -0.256 4.256 11 C -0.040 4.040 12 C -0.225 4.225 13 C -0.059 4.059 14 C -0.241 4.241 15 C 0.103 3.897 16 C -0.453 4.453 17 H 0.067 0.933 18 C 0.034 3.966 19 N -0.850 5.850 20 Si 0.969 3.031 21 H -0.243 1.243 22 H -0.245 1.245 23 H -0.281 1.281 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.416 0.584 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 1.117 14.741 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.303 5.303 3 C -0.119 4.119 4 C -0.065 4.065 5 C -0.048 4.048 6 O -0.170 6.170 7 N -0.301 5.301 8 C 0.358 3.642 9 O -0.448 6.448 10 C -0.261 4.261 11 C -0.058 4.058 12 C -0.243 4.243 13 C -0.077 4.077 14 C -0.260 4.260 15 C 0.099 3.901 16 C -0.482 4.482 17 H 0.085 0.915 18 C -0.180 4.180 19 N -0.477 5.477 20 Si 0.790 3.210 21 H -0.168 1.168 22 H -0.169 1.169 23 H -0.207 1.207 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.259 0.741 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.999 1.725 13.535 18.170 hybrid contribution -0.374 0.497 0.342 0.710 sum -12.374 2.222 13.877 18.725 Atomic orbital electron populations 1.22447 0.86156 1.02379 1.01314 1.61813 1.09261 1.15098 1.44139 1.22355 1.00510 0.87871 1.01178 1.22156 1.01670 0.90305 0.92410 1.23318 0.95826 0.96993 0.88682 1.90686 1.68977 1.06004 1.51335 1.47354 1.51085 0.98410 1.33220 1.18692 0.78630 0.88584 0.78274 1.90753 1.42338 1.59361 1.52331 1.19470 1.11777 0.90087 1.04751 1.21242 0.94212 0.93535 0.96821 1.20976 1.07606 0.95301 1.00456 1.21300 0.93257 0.99426 0.93695 1.21250 1.08346 0.92766 1.03641 1.17747 0.88234 0.92519 0.91568 1.19948 1.24325 1.11958 0.91981 0.91547 1.27174 0.96232 0.96907 0.97662 1.69634 1.32706 1.37318 1.08046 0.85461 0.80114 0.78424 0.76991 1.16760 1.16882 1.20746 0.93692 0.91427 0.91672 0.92409 0.91090 0.93766 0.89044 0.90519 0.91188 0.89620 0.74090 0.84016 0.83263 0.84132 0.87746 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.39 127.69 1.20 1.67 16 2 N -0.58 -14.07 4.88 -948.84 -4.63 -18.70 16 3 C 0.03 0.59 9.52 127.69 1.22 1.80 16 4 C 0.06 1.31 5.39 86.30 0.46 1.78 16 5 C 0.03 0.68 6.41 71.98 0.46 1.14 16 6 O -0.17 -6.25 11.04 -21.43 -0.24 -6.49 16 7 N -0.60 -22.50 6.34 -175.87 -1.11 -23.61 16 8 C 0.56 28.25 7.87 86.67 0.68 28.93 16 9 O -0.57 -35.58 13.96 13.30 0.19 -35.39 16 10 C -0.26 -12.02 5.92 -19.70 -0.12 -12.14 16 11 C -0.04 -1.37 9.52 22.50 0.21 -1.16 16 12 C -0.22 -7.11 10.03 22.40 0.22 -6.88 16 13 C -0.06 -2.08 10.01 22.26 0.22 -1.86 16 14 C -0.24 -10.90 6.98 22.72 0.16 -10.74 16 15 C 0.10 5.48 5.00 -21.11 -0.11 5.37 16 16 C -0.45 -28.02 8.27 23.42 0.19 -27.83 16 17 H 0.07 4.75 6.02 -2.91 -0.02 4.73 16 18 C 0.03 1.96 5.48 85.37 0.47 2.43 16 19 N -0.85 -50.94 13.92 21.88 0.30 -50.64 16 20 Si 0.97 43.96 24.55 68.60 1.68 45.64 16 21 H -0.24 -9.91 6.82 99.48 0.68 -9.23 16 22 H -0.25 -11.08 6.69 99.48 0.67 -10.41 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H 0.04 0.63 8.09 -2.39 -0.02 0.61 16 25 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 26 H 0.06 1.24 6.83 -2.39 -0.02 1.22 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 29 H 0.04 0.69 8.13 -2.39 -0.02 0.67 16 30 H 0.09 1.24 7.95 -2.39 -0.02 1.22 16 31 H 0.08 1.70 7.94 -2.38 -0.02 1.68 16 32 H 0.07 1.42 6.83 -2.38 -0.02 1.40 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.42 11.40 6.59 -92.71 -0.61 10.79 16 35 H 0.14 3.51 6.42 -2.91 -0.02 3.49 16 36 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 38 H 0.10 4.69 5.15 -2.91 -0.01 4.67 16 39 H 0.29 15.63 8.29 -92.71 -0.77 14.86 16 Total: -1.00 -81.70 321.84 1.86 -79.83 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.39 Total: 26.85 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.28 Total: -17.50 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -5.44 Total: -92.95 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.05 Total: -41.88 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -81.70 1.86 -79.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868628482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.114 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds