Wall clock time and date at job start Mon Mar 30 2020 23:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47270 * 2 1 4 4 C 1.34221 * 125.74451 * 124.98062 * 3 2 1 5 5 C 1.38131 * 107.41052 * 179.80147 * 4 3 2 6 6 C 1.47284 * 126.42888 * 180.22330 * 5 4 3 7 7 O 1.21522 * 120.00012 * 180.17223 * 6 5 4 8 8 O 1.34756 * 119.99686 * 0.17119 * 6 5 4 9 9 C 1.45206 * 116.99711 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46972 * 329.99764 * 9 8 6 11 11 C 1.53000 * 109.47196 * 89.99679 * 9 8 6 12 12 C 1.50701 * 109.46977 * 209.99512 * 9 8 6 13 13 H 1.08000 * 120.00138 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99606 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99715 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47077 * 90.00538 * 16 14 12 18 18 H 1.48498 * 109.46860 * 210.00738 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00352 * 16 14 12 20 20 C 1.41344 * 107.14373 * 0.36632 * 5 4 3 21 21 C 1.50690 * 125.99422 * 179.89400 * 20 5 4 22 22 C 1.53000 * 117.50063 * 239.71638 * 21 20 5 23 23 C 1.53002 * 60.02940 * 252.49714 * 22 21 20 24 24 N 1.30438 * 108.00835 * 359.62972 * 20 5 4 25 25 H 1.08999 * 109.46802 * 300.00627 * 1 2 3 26 26 H 1.09002 * 109.46663 * 59.99752 * 1 2 3 27 27 H 1.08994 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47162 * 239.99724 * 2 1 3 29 29 H 1.08999 * 109.46492 * 119.99763 * 2 1 3 30 30 H 1.08005 * 126.29274 * 0.07398 * 4 3 2 31 31 H 1.08997 * 109.47487 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.47341 * 300.00376 * 11 9 8 33 33 H 1.09003 * 109.47189 * 59.99884 * 11 9 8 34 34 H 0.97002 * 120.00610 * 179.97438 * 15 14 12 35 35 H 1.09007 * 115.55011 * 25.38427 * 21 20 5 36 36 H 1.09002 * 117.49833 * 359.97438 * 22 21 20 37 37 H 1.09002 * 117.49953 * 144.99860 * 22 21 20 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8686 1.9122 0.8926 5 6 3.0744 3.2302 0.5340 6 6 3.9396 4.2002 1.2266 7 8 4.0326 5.3378 0.8093 8 8 4.6279 3.8263 2.3231 9 6 5.4602 4.8347 2.9546 10 1 5.8136 5.5382 2.2008 11 6 4.6423 5.5844 4.0082 12 6 6.6409 4.1702 3.6146 13 1 6.7546 3.0974 3.5640 14 6 7.5764 4.9321 4.2819 15 7 7.4382 6.2384 4.3430 16 14 9.0404 4.1085 5.0994 17 1 10.1641 4.0236 4.1324 18 1 9.4616 4.9057 6.2792 19 1 8.6589 2.7414 5.5363 20 6 2.2963 3.4742 -0.6205 21 6 2.2041 4.7802 -1.3666 22 6 0.8241 5.4301 -1.4854 23 6 1.4693 4.7771 -2.7094 24 7 1.6764 2.3691 -0.9300 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3138 1.4015 1.7337 31 1 5.2669 6.3417 4.4819 32 1 3.7882 6.0649 3.5309 33 1 4.2888 4.8809 4.7620 34 1 8.0962 6.7744 4.8129 35 1 3.0648 5.4414 -1.2651 36 1 -0.0172 4.9128 -1.0242 37 1 0.7769 6.5189 -1.4621 38 1 1.0525 3.8305 -3.0532 39 1 1.8469 5.4363 -3.4912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:48 Heat of formation + Delta-G solvation = 5.796593 kcal Electronic energy + Delta-G solvation = -21465.989037 eV Core-core repulsion = 18183.196144 eV Total energy + Delta-G solvation = -3282.792893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34821 -38.92128 -37.10651 -35.43545 -34.28394 -33.18008 -30.56283 -29.93006 -29.11091 -25.27352 -24.74610 -23.71009 -22.29375 -21.87276 -21.16216 -19.55702 -18.94656 -17.39863 -16.44061 -16.30775 -15.68717 -15.46694 -15.13324 -14.67765 -14.52527 -14.38264 -13.93907 -13.20206 -12.97653 -12.65134 -12.45293 -12.05608 -11.88398 -11.75461 -11.62508 -11.44811 -11.17973 -11.05268 -10.92992 -10.77899 -10.69602 -10.31100 -10.26663 -10.23770 -9.48326 -9.41616 -9.11416 -8.83532 -8.51776 -8.42667 -6.14267 -4.20819 1.65301 2.21172 2.30026 3.26578 3.31879 3.35471 3.78963 3.87600 4.10800 4.24339 4.40468 4.57648 4.66904 4.76600 4.92274 5.00413 5.12295 5.18791 5.20466 5.30741 5.46954 5.65599 5.71421 5.73080 5.83190 5.91469 6.10419 6.21178 6.36271 6.55270 6.73923 6.87094 6.97298 7.00258 7.27374 7.65065 7.67259 7.80411 8.02327 8.20996 8.74820 8.99898 9.44575 10.93217 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.004428 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.107184 B = 6321.814890 C = 7305.933179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.364 5.364 4 C 0.122 3.878 5 C -0.262 4.262 6 C 0.531 3.469 7 O -0.523 6.523 8 O -0.358 6.358 9 C 0.217 3.783 10 H 0.047 0.953 11 C -0.154 4.154 12 C -0.519 4.519 13 H 0.068 0.932 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.910 3.090 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.163 3.837 21 C -0.081 4.081 22 C -0.159 4.159 23 C -0.169 4.169 24 N -0.302 5.302 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.192 0.808 31 H 0.098 0.902 32 H 0.016 0.984 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 -10.251 -8.958 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.143 5.143 4 C -0.028 4.028 5 C -0.274 4.274 6 C 0.375 3.625 7 O -0.414 6.414 8 O -0.274 6.274 9 C 0.165 3.835 10 H 0.065 0.935 11 C -0.212 4.212 12 C -0.557 4.557 13 H 0.086 0.914 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.737 3.263 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.004 4.004 21 C -0.101 4.101 22 C -0.197 4.197 23 C -0.206 4.206 24 N -0.123 5.123 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.209 0.791 31 H 0.116 0.884 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.781 -10.496 -9.755 19.880 hybrid contribution 1.428 0.012 1.203 1.867 sum -12.353 -10.484 -8.552 18.321 Atomic orbital electron populations 1.22054 0.93636 1.02861 1.03748 1.21789 0.96234 0.77038 1.04204 1.48440 1.34832 1.10327 1.20689 1.23328 0.91403 0.93722 0.94383 1.19584 1.10704 0.94317 1.02828 1.19878 0.77781 0.85581 0.79254 1.90721 1.63575 1.20830 1.66255 1.86518 1.55632 1.46813 1.38428 1.20589 0.86618 0.85526 0.90804 0.93508 1.22150 0.98520 1.01072 0.99424 1.21023 1.05772 0.94563 1.34361 0.91425 1.24875 0.98196 0.94885 0.96007 1.69900 1.35822 1.04399 1.42554 0.86299 0.81887 0.79281 0.78797 1.20442 1.20988 1.19667 1.21398 0.92816 0.93361 0.92792 1.20557 0.98450 0.92915 0.98139 1.22941 0.94935 1.00240 1.01630 1.22997 1.03728 1.02961 0.90958 1.76991 1.24994 0.96540 1.13822 0.91926 0.91054 0.90637 0.89463 0.88164 0.79096 0.88360 0.96446 0.94593 0.92454 0.84192 0.88936 0.88089 0.88292 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.09 37.16 0.37 -0.83 16 2 C 0.13 1.03 7.21 -4.04 -0.03 1.00 16 3 N -0.36 -4.69 3.65 -60.79 -0.22 -4.91 16 4 C 0.12 1.78 11.29 -16.55 -0.19 1.59 16 5 C -0.26 -4.80 6.13 -105.08 -0.64 -5.45 16 6 C 0.53 11.94 7.93 34.41 0.27 12.22 16 7 O -0.52 -12.84 14.25 -19.28 -0.27 -13.11 16 8 O -0.36 -8.70 9.69 -40.64 -0.39 -9.10 16 9 C 0.22 5.92 2.56 -27.88 -0.07 5.85 16 10 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 11 C -0.15 -3.97 9.33 37.16 0.35 -3.63 16 12 C -0.52 -14.64 8.90 -34.44 -0.31 -14.94 16 13 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 16 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C 0.16 2.75 6.80 -82.01 -0.56 2.19 16 21 C -0.08 -1.25 5.66 -91.74 -0.52 -1.77 16 22 C -0.16 -2.03 10.23 -26.73 -0.27 -2.31 16 23 C -0.17 -2.05 10.14 -26.69 -0.27 -2.33 16 24 N -0.30 -4.58 11.91 33.90 0.40 -4.18 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.55 8.06 -51.93 -0.42 0.14 16 30 H 0.19 2.28 8.06 -52.48 -0.42 1.86 16 31 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.14 2.41 6.72 -51.93 -0.35 2.06 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 1.20 7.90 -51.93 -0.41 0.79 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -32.69 336.62 -7.40 -40.09 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.64 Total: 1.63 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.96 Total: -6.77 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.81 Total: -33.89 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.67 Total: -22.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.69 -7.40 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.891 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds