Wall clock time and date at job start Mon Mar 30 2020 23:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47270 * 2 1 4 4 C 1.34221 * 125.74451 * 124.98062 * 3 2 1 5 5 C 1.38131 * 107.41052 * 179.80147 * 4 3 2 6 6 C 1.47284 * 126.42888 * 180.22330 * 5 4 3 7 7 O 1.21522 * 120.00012 * 180.17223 * 6 5 4 8 8 O 1.34756 * 119.99686 * 0.17119 * 6 5 4 9 9 C 1.45206 * 116.99711 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46972 * 329.99764 * 9 8 6 11 11 C 1.53000 * 109.47196 * 89.99679 * 9 8 6 12 12 C 1.50701 * 109.46977 * 209.99512 * 9 8 6 13 13 H 1.08000 * 120.00138 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99606 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00513 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99715 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47077 * 90.00538 * 16 14 12 18 18 H 1.48498 * 109.46860 * 210.00738 * 16 14 12 19 19 H 1.48499 * 109.47030 * 330.00352 * 16 14 12 20 20 C 1.41344 * 107.14373 * 0.36632 * 5 4 3 21 21 C 1.50690 * 125.99422 * 179.89400 * 20 5 4 22 22 C 1.53000 * 117.50063 * 239.71638 * 21 20 5 23 23 C 1.53002 * 60.02940 * 252.49714 * 22 21 20 24 24 N 1.30438 * 108.00835 * 359.62972 * 20 5 4 25 25 H 1.08999 * 109.46802 * 300.00627 * 1 2 3 26 26 H 1.09002 * 109.46663 * 59.99752 * 1 2 3 27 27 H 1.08994 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47162 * 239.99724 * 2 1 3 29 29 H 1.08999 * 109.46492 * 119.99763 * 2 1 3 30 30 H 1.08005 * 126.29274 * 0.07398 * 4 3 2 31 31 H 1.08997 * 109.47487 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.47341 * 300.00376 * 11 9 8 33 33 H 1.09003 * 109.47189 * 59.99884 * 11 9 8 34 34 H 0.97002 * 120.00610 * 179.97438 * 15 14 12 35 35 H 1.09007 * 115.55011 * 25.38427 * 21 20 5 36 36 H 1.09002 * 117.49833 * 359.97438 * 22 21 20 37 37 H 1.09002 * 117.49953 * 144.99860 * 22 21 20 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8686 1.9122 0.8926 5 6 3.0744 3.2302 0.5340 6 6 3.9396 4.2002 1.2266 7 8 4.0326 5.3378 0.8093 8 8 4.6279 3.8263 2.3231 9 6 5.4602 4.8347 2.9546 10 1 5.8136 5.5382 2.2008 11 6 4.6423 5.5844 4.0082 12 6 6.6409 4.1702 3.6146 13 1 6.7546 3.0974 3.5640 14 6 7.5764 4.9321 4.2819 15 7 7.4382 6.2384 4.3430 16 14 9.0404 4.1085 5.0994 17 1 10.1641 4.0236 4.1324 18 1 9.4616 4.9057 6.2792 19 1 8.6589 2.7414 5.5363 20 6 2.2963 3.4742 -0.6205 21 6 2.2041 4.7802 -1.3666 22 6 0.8241 5.4301 -1.4854 23 6 1.4693 4.7771 -2.7094 24 7 1.6764 2.3691 -0.9300 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.3138 1.4015 1.7337 31 1 5.2669 6.3417 4.4819 32 1 3.7882 6.0649 3.5309 33 1 4.2888 4.8809 4.7620 34 1 8.0962 6.7744 4.8129 35 1 3.0648 5.4414 -1.2651 36 1 -0.0172 4.9128 -1.0242 37 1 0.7769 6.5189 -1.4621 38 1 1.0525 3.8305 -3.0532 39 1 1.8469 5.4363 -3.4912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:47 Heat of formation + Delta-G solvation = -12.899004 kcal Electronic energy + Delta-G solvation = -21466.799739 eV Core-core repulsion = 18183.196144 eV Total energy + Delta-G solvation = -3283.603595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55341 -40.73740 -38.20018 -37.31760 -35.29149 -35.12908 -32.07730 -31.29585 -30.58654 -27.42828 -25.67561 -25.23871 -23.30768 -23.05544 -22.67257 -21.23973 -20.18587 -18.96793 -18.30562 -17.87782 -17.01923 -16.86574 -16.47982 -16.16460 -16.13600 -15.59511 -14.99218 -14.70612 -14.38135 -14.02825 -13.87396 -13.43486 -13.17523 -13.11722 -12.95877 -12.86260 -12.79891 -12.51120 -12.37002 -12.33935 -12.12655 -11.98854 -11.72646 -11.54764 -11.49897 -11.08431 -10.92284 -10.57005 -10.24606 -9.74852 -8.25263 -6.42077 0.37927 0.90008 1.30450 1.44123 1.46284 1.57784 2.13548 2.21055 2.47607 2.99112 3.05599 3.23173 3.50220 3.87472 3.94923 4.07885 4.09682 4.14619 4.31286 4.37783 4.44098 4.56408 4.63538 4.73167 4.80801 4.83464 4.85960 4.88637 4.94315 5.15831 5.18736 5.23523 5.24846 5.38999 5.52257 5.66782 5.85713 5.95992 6.13573 6.46585 6.64358 7.08417 7.30741 8.82781 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.004428 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.107184 B = 6321.814890 C = 7305.933179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.349 5.349 4 C 0.145 3.855 5 C -0.307 4.307 6 C 0.526 3.474 7 O -0.556 6.556 8 O -0.359 6.359 9 C 0.219 3.781 10 H 0.005 0.995 11 C -0.140 4.140 12 C -0.545 4.545 13 H 0.070 0.930 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.984 3.016 17 H -0.274 1.274 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.156 3.844 21 C -0.117 4.117 22 C -0.150 4.150 23 C -0.143 4.143 24 N -0.305 5.305 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.221 0.779 31 H 0.080 0.920 32 H 0.019 0.981 33 H 0.046 0.954 34 H 0.270 0.730 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -12.980 -8.899 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.127 5.127 4 C -0.008 4.008 5 C -0.320 4.320 6 C 0.373 3.627 7 O -0.449 6.449 8 O -0.275 6.275 9 C 0.166 3.834 10 H 0.023 0.977 11 C -0.198 4.198 12 C -0.583 4.583 13 H 0.088 0.912 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.807 3.193 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.184 1.184 20 C -0.010 4.010 21 C -0.137 4.137 22 C -0.188 4.188 23 C -0.180 4.180 24 N -0.126 5.126 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.152 0.848 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.430 -13.257 -9.727 21.877 hybrid contribution 1.522 0.785 1.107 2.039 sum -12.908 -12.472 -8.620 19.911 Atomic orbital electron populations 1.22031 0.92931 1.04450 1.02378 1.22380 0.96834 0.74425 1.06765 1.48942 1.33207 1.11443 1.19071 1.23645 0.90322 0.92363 0.94512 1.19486 1.12581 0.95438 1.04513 1.20579 0.77452 0.86181 0.78484 1.90693 1.64784 1.22527 1.66884 1.86494 1.55773 1.45782 1.39462 1.20318 0.87487 0.85584 0.89997 0.97719 1.21969 0.97997 1.00661 0.99186 1.21296 1.06761 0.94855 1.35353 0.91161 1.25847 1.00988 0.95428 0.96159 1.70029 1.36893 1.05896 1.42831 0.85169 0.77719 0.78676 0.77748 1.19908 1.20155 1.18371 1.21551 0.92721 0.94248 0.92485 1.20497 0.98968 0.92938 1.01278 1.23018 0.93219 1.00896 1.01700 1.23063 1.01498 1.03276 0.90140 1.76960 1.24870 0.96395 1.14411 0.92926 0.92749 0.87570 0.87751 0.84805 0.76292 0.90107 0.96144 0.93444 0.92058 0.86996 0.88763 0.86983 0.87837 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.09 71.98 0.73 -1.12 16 2 C 0.11 1.41 7.21 86.38 0.62 2.03 16 3 N -0.35 -8.20 3.65 -346.24 -1.26 -9.46 16 4 C 0.15 3.99 11.29 84.30 0.95 4.94 16 5 C -0.31 -11.45 6.13 -20.16 -0.12 -11.57 16 6 C 0.53 24.74 7.93 70.20 0.56 25.30 16 7 O -0.56 -29.15 14.25 19.76 0.28 -28.87 16 8 O -0.36 -18.00 9.69 -56.66 -0.55 -18.54 16 9 C 0.22 12.44 2.56 29.85 0.08 12.52 16 10 H 0.00 0.32 7.16 -2.39 -0.02 0.30 16 11 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 12 C -0.55 -31.20 8.90 25.60 0.23 -30.97 16 13 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 14 C 0.02 0.85 5.30 84.66 0.45 1.29 16 15 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 16 Si 0.98 42.86 29.54 68.60 2.03 44.89 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 C 0.16 5.32 6.80 43.53 0.30 5.62 16 21 C -0.12 -3.72 5.66 -11.52 -0.07 -3.79 16 22 C -0.15 -3.79 10.23 30.60 0.31 -3.48 16 23 C -0.14 -3.34 10.14 30.62 0.31 -3.03 16 24 N -0.31 -8.89 11.91 -46.65 -0.56 -9.45 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.13 0.83 8.06 -2.39 -0.02 0.81 16 30 H 0.22 4.63 8.06 -2.91 -0.02 4.61 16 31 H 0.08 4.58 6.07 -2.39 -0.01 4.56 16 32 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.11 4.17 6.72 -2.38 -0.02 4.16 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.10 2.34 7.90 -2.39 -0.02 2.32 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -73.80 336.62 6.24 -67.56 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.04 Total: 16.13 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.01 Total: -9.04 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.58 Total: -72.13 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.27 Total: -47.41 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.80 6.24 -67.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.665 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds