Wall clock time and date at job start Tue Mar 31 2020 00:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42899 * 109.47376 * 2 1 4 4 N 1.41593 * 114.00042 * 179.97438 * 3 2 1 5 5 C 1.46505 * 120.00323 * 269.99920 * 4 3 2 6 6 C 1.52994 * 109.46967 * 255.00204 * 5 4 3 7 7 C 1.34774 * 119.99930 * 89.99884 * 4 3 2 8 8 O 1.21585 * 120.00063 * 179.97438 * 7 4 3 9 9 N 1.34774 * 120.00040 * 0.02562 * 7 4 3 10 10 C 1.39249 * 120.00314 * 184.29228 * 9 7 4 11 11 C 1.39480 * 119.83100 * 324.69828 * 10 9 7 12 12 C 1.36368 * 120.16918 * 180.25615 * 11 10 9 13 13 C 1.40870 * 119.82881 * 359.49581 * 12 11 10 14 14 C 1.41149 * 120.16945 * 180.23416 * 13 12 11 15 15 H 1.08000 * 120.00497 * 215.03455 * 14 13 12 16 16 C 1.39894 * 120.00105 * 35.03087 * 14 13 12 17 17 N 1.30883 * 119.99978 * 355.55849 * 16 14 13 18 18 Si 1.86797 * 120.00501 * 175.56197 * 16 14 13 19 19 H 1.48504 * 109.47040 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47109 * 119.99647 * 18 16 14 21 21 H 1.48498 * 109.47323 * 240.00002 * 18 16 14 22 22 C 1.40877 * 119.67092 * 0.52316 * 13 12 11 23 23 C 1.36369 * 119.82553 * 359.72906 * 22 13 12 24 24 H 1.09001 * 109.46898 * 59.99855 * 1 2 3 25 25 H 1.08998 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46546 * 300.00261 * 1 2 3 27 27 H 1.08998 * 109.47235 * 239.99563 * 2 1 3 28 28 H 1.09009 * 109.46805 * 119.99833 * 2 1 3 29 29 H 1.08999 * 109.46706 * 15.00195 * 5 4 3 30 30 H 1.08996 * 109.46865 * 134.99819 * 5 4 3 31 31 H 1.08999 * 109.47401 * 299.99566 * 6 5 4 32 32 H 1.08996 * 109.47642 * 60.00092 * 6 5 4 33 33 H 1.08997 * 109.47299 * 179.97438 * 6 5 4 34 34 H 0.97007 * 120.00431 * 4.29020 * 9 7 4 35 35 H 1.08004 * 119.91458 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08793 * 179.74970 * 12 11 10 37 37 H 0.97000 * 120.00427 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.08730 * 179.71165 * 22 13 12 39 39 H 1.08001 * 119.91688 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1478 1.5170 1.2696 6 6 4.6141 2.9517 1.5245 7 6 4.0902 1.5120 -1.1663 8 8 5.3023 1.6084 -1.1659 9 7 3.4189 1.4591 -2.3338 10 6 4.1176 1.4236 -3.5378 11 6 5.3102 2.1349 -3.6691 12 6 5.9974 2.1092 -4.8467 13 6 5.5053 1.3533 -5.9288 14 6 6.2132 1.3176 -7.1494 15 1 5.6753 1.2668 -8.0845 16 6 7.6118 1.3482 -7.1479 17 7 8.2620 1.4974 -6.0218 18 14 8.5516 1.1762 -8.7531 19 1 7.5910 1.0203 -9.8748 20 1 9.3792 2.3892 -8.9746 21 1 9.4316 -0.0180 -8.6860 22 6 4.2997 0.6379 -5.7887 23 6 3.6211 0.6774 -4.6065 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 3.4925 1.1985 2.0803 30 1 5.0135 0.8566 1.2213 31 1 5.2694 3.2702 0.7138 32 1 3.7484 3.6121 1.5728 33 1 5.1567 2.9950 2.4689 34 1 2.4489 1.4457 -2.3354 35 1 5.6881 2.7110 -2.8374 36 1 6.9186 2.6636 -4.9482 37 1 9.2317 1.5190 -6.0208 38 1 3.9139 0.0600 -6.6154 39 1 2.6965 0.1299 -4.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878087103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:25 Heat of formation + Delta-G solvation = -1.732596 kcal Electronic energy + Delta-G solvation = -21540.597255 eV Core-core repulsion = 18257.477872 eV Total energy + Delta-G solvation = -3283.119384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.06729 -37.92620 -37.04693 -34.78069 -33.86531 -32.87158 -31.35452 -29.66798 -29.33795 -28.34060 -25.01993 -23.40729 -23.00700 -21.32192 -20.78418 -19.96670 -18.45276 -17.26122 -17.12060 -15.82024 -15.73659 -15.26213 -15.10342 -14.46367 -14.26180 -13.93045 -13.86708 -13.11788 -12.94046 -12.71499 -12.60901 -12.33594 -12.11662 -11.98820 -11.73829 -11.69261 -11.42570 -11.16729 -11.06099 -10.87299 -10.51792 -10.44442 -9.93844 -9.83333 -9.55493 -9.07077 -8.86396 -8.71803 -7.47887 -6.82589 -6.55083 -4.28655 1.87692 2.70034 3.07587 3.13586 3.15261 3.19474 3.59083 3.71863 4.02501 4.76368 4.77322 4.79727 4.89514 5.00307 5.14825 5.25348 5.37994 5.53110 5.59646 5.69630 5.73265 5.83306 5.94662 6.16705 6.29305 6.41276 6.59605 6.82695 6.88932 7.08703 7.19048 7.31792 7.40264 7.69321 7.84409 8.04171 8.14108 8.32992 8.45669 8.72068 8.91752 8.98174 9.08839 10.36140 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.004003 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.430917 B = 6992.899572 C = 7791.798233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.018 3.982 3 O -0.150 6.150 4 N -0.499 5.499 5 C 0.138 3.862 6 C -0.169 4.169 7 C 0.704 3.296 8 O -0.554 6.554 9 N -0.660 5.660 10 C 0.021 3.979 11 C -0.094 4.094 12 C -0.142 4.142 13 C 0.099 3.901 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.809 5.809 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.203 4.203 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.277 0.723 38 H 0.097 0.903 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 -1.519 12.142 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 O -0.155 6.155 4 N -0.283 5.283 5 C 0.017 3.983 6 C -0.227 4.227 7 C 0.407 3.593 8 O -0.430 6.430 9 N -0.306 5.306 10 C -0.071 4.071 11 C -0.114 4.114 12 C -0.162 4.162 13 C 0.096 3.904 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.436 5.436 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.223 4.223 23 C -0.135 4.135 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.597 -1.273 12.239 15.605 hybrid contribution -0.147 -0.574 -0.536 0.799 sum -9.745 -1.847 11.703 15.340 Atomic orbital electron populations 1.21715 0.92395 1.02900 1.03388 1.23101 0.95770 0.85625 1.01538 1.90609 1.03113 1.25044 1.96748 1.49532 0.93891 1.79133 1.05718 1.21460 0.95419 0.98504 0.82896 1.22151 1.01893 0.96263 1.02396 1.15958 0.84872 0.78704 0.79744 1.90982 1.10672 1.57274 1.84082 1.42140 1.09062 1.75816 1.03535 1.17135 0.97909 1.07470 0.84613 1.20670 0.94432 0.98605 0.97718 1.21298 1.01063 1.01090 0.92748 1.17724 0.90406 0.88581 0.93652 1.19500 0.91027 1.45242 0.93713 0.90638 1.25881 0.98302 0.92775 0.97641 1.69804 1.09296 1.37680 1.26788 0.86169 0.79530 0.78426 0.81942 1.18651 1.20018 1.20053 1.20672 0.99925 1.05158 0.96516 1.20034 0.99640 0.99690 0.94166 0.91389 0.90492 0.91667 0.92234 0.92511 0.90061 0.90050 0.91090 0.92410 0.91506 0.77020 0.87326 0.85193 0.91188 0.88532 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.72 16 2 C 0.02 0.19 7.10 37.16 0.26 0.45 16 3 O -0.15 -1.96 10.18 -11.47 -0.12 -2.08 16 4 N -0.50 -7.56 3.02 -65.23 -0.20 -7.76 16 5 C 0.14 1.71 6.38 -4.04 -0.03 1.68 16 6 C -0.17 -2.02 10.04 37.15 0.37 -1.64 16 7 C 0.70 13.62 8.04 -86.92 -0.70 12.92 16 8 O -0.55 -12.67 12.83 5.29 0.07 -12.60 16 9 N -0.66 -12.69 5.28 -14.10 -0.07 -12.77 16 10 C 0.02 0.49 6.31 -83.56 -0.53 -0.04 16 11 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 12 C -0.14 -3.87 8.61 -39.26 -0.34 -4.21 16 13 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 14 C -0.46 -12.53 9.02 -37.86 -0.34 -12.87 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 17 N -0.81 -21.83 10.61 55.55 0.59 -21.24 16 18 Si 0.91 19.33 29.56 -169.99 -5.03 14.30 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 22 C -0.20 -4.96 9.74 -39.26 -0.38 -5.35 16 23 C -0.11 -2.57 9.90 -39.79 -0.39 -2.96 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 31 H 0.07 1.06 7.34 -51.93 -0.38 0.68 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 6.48 7.95 -40.82 -0.32 6.15 16 35 H 0.11 2.80 6.22 -52.48 -0.33 2.47 16 36 H 0.13 3.70 6.15 -52.49 -0.32 3.38 16 37 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -30.76 330.75 -8.03 -38.79 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.54 Total: 10.06 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.72 Total: -11.69 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.32 Total: -41.76 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.05 Total: -14.68 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.76 -8.03 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878087103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.055 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds