Wall clock time and date at job start Tue Mar 31 2020 00:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42899 * 109.47376 * 2 1 4 4 N 1.41593 * 114.00042 * 179.97438 * 3 2 1 5 5 C 1.46505 * 120.00323 * 269.99920 * 4 3 2 6 6 C 1.52994 * 109.46967 * 255.00204 * 5 4 3 7 7 C 1.34774 * 119.99930 * 89.99884 * 4 3 2 8 8 O 1.21585 * 120.00063 * 179.97438 * 7 4 3 9 9 N 1.34774 * 120.00040 * 0.02562 * 7 4 3 10 10 C 1.39249 * 120.00314 * 184.29228 * 9 7 4 11 11 C 1.39480 * 119.83100 * 324.69828 * 10 9 7 12 12 C 1.36368 * 120.16918 * 180.25615 * 11 10 9 13 13 C 1.40870 * 119.82881 * 359.49581 * 12 11 10 14 14 C 1.41149 * 120.16945 * 180.23416 * 13 12 11 15 15 H 1.08000 * 120.00497 * 215.03455 * 14 13 12 16 16 C 1.39894 * 120.00105 * 35.03087 * 14 13 12 17 17 N 1.30883 * 119.99978 * 355.55849 * 16 14 13 18 18 Si 1.86797 * 120.00501 * 175.56197 * 16 14 13 19 19 H 1.48504 * 109.47040 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47109 * 119.99647 * 18 16 14 21 21 H 1.48498 * 109.47323 * 240.00002 * 18 16 14 22 22 C 1.40877 * 119.67092 * 0.52316 * 13 12 11 23 23 C 1.36369 * 119.82553 * 359.72906 * 22 13 12 24 24 H 1.09001 * 109.46898 * 59.99855 * 1 2 3 25 25 H 1.08998 * 109.46837 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46546 * 300.00261 * 1 2 3 27 27 H 1.08998 * 109.47235 * 239.99563 * 2 1 3 28 28 H 1.09009 * 109.46805 * 119.99833 * 2 1 3 29 29 H 1.08999 * 109.46706 * 15.00195 * 5 4 3 30 30 H 1.08996 * 109.46865 * 134.99819 * 5 4 3 31 31 H 1.08999 * 109.47401 * 299.99566 * 6 5 4 32 32 H 1.08996 * 109.47642 * 60.00092 * 6 5 4 33 33 H 1.08997 * 109.47299 * 179.97438 * 6 5 4 34 34 H 0.97007 * 120.00431 * 4.29020 * 9 7 4 35 35 H 1.08004 * 119.91458 * 359.97438 * 11 10 9 36 36 H 1.07996 * 120.08793 * 179.74970 * 12 11 10 37 37 H 0.97000 * 120.00427 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.08730 * 179.71165 * 22 13 12 39 39 H 1.08001 * 119.91688 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 7 3.4180 1.4590 0.0006 5 6 4.1478 1.5170 1.2696 6 6 4.6141 2.9517 1.5245 7 6 4.0902 1.5120 -1.1663 8 8 5.3023 1.6084 -1.1659 9 7 3.4189 1.4591 -2.3338 10 6 4.1176 1.4236 -3.5378 11 6 5.3102 2.1349 -3.6691 12 6 5.9974 2.1092 -4.8467 13 6 5.5053 1.3533 -5.9288 14 6 6.2132 1.3176 -7.1494 15 1 5.6753 1.2668 -8.0845 16 6 7.6118 1.3482 -7.1479 17 7 8.2620 1.4974 -6.0218 18 14 8.5516 1.1762 -8.7531 19 1 7.5910 1.0203 -9.8748 20 1 9.3792 2.3892 -8.9746 21 1 9.4316 -0.0180 -8.6860 22 6 4.2997 0.6379 -5.7887 23 6 3.6211 0.6774 -4.6065 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 3.4925 1.1985 2.0803 30 1 5.0135 0.8566 1.2213 31 1 5.2694 3.2702 0.7138 32 1 3.7484 3.6121 1.5728 33 1 5.1567 2.9950 2.4689 34 1 2.4489 1.4457 -2.3354 35 1 5.6881 2.7110 -2.8374 36 1 6.9186 2.6636 -4.9482 37 1 9.2317 1.5190 -6.0208 38 1 3.9139 0.0600 -6.6154 39 1 2.6965 0.1299 -4.4976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878087103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:23 Heat of formation + Delta-G solvation = -19.637344 kcal Electronic energy + Delta-G solvation = -21541.373663 eV Core-core repulsion = 18257.477872 eV Total energy + Delta-G solvation = -3283.895792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57948 -39.50137 -38.48270 -36.39937 -35.15976 -34.68179 -32.26245 -31.46797 -31.02537 -29.80717 -26.81627 -24.60808 -23.93451 -23.18505 -22.48163 -21.40706 -19.92327 -19.21524 -18.57014 -17.23200 -17.10437 -16.87183 -16.21501 -15.92713 -15.74632 -15.48334 -15.07320 -14.81535 -14.50461 -13.98850 -13.81438 -13.61558 -13.49251 -13.32669 -13.13926 -12.95914 -12.86580 -12.64884 -12.51257 -12.31351 -12.07307 -11.82917 -11.69366 -11.49695 -11.16786 -10.87655 -10.58662 -10.10963 -9.44806 -8.72185 -8.47952 -6.31166 0.70968 0.86995 1.13922 1.40310 1.46968 1.56385 2.00896 2.25329 2.32477 2.83165 3.67759 3.72238 4.03919 4.07516 4.17892 4.26521 4.38849 4.42335 4.46412 4.48747 4.71878 4.85495 4.95931 4.98350 4.99842 5.11948 5.15799 5.24101 5.29905 5.34249 5.42010 5.45340 5.69056 5.77940 6.07427 6.13259 6.15872 6.37159 6.72160 6.95662 6.98130 7.03360 7.46536 8.45440 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.004003 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.430917 B = 6992.899572 C = 7791.798233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.012 3.988 3 O -0.151 6.151 4 N -0.492 5.492 5 C 0.132 3.868 6 C -0.163 4.163 7 C 0.700 3.300 8 O -0.597 6.597 9 N -0.654 5.654 10 C 0.034 3.966 11 C -0.107 4.107 12 C -0.165 4.165 13 C 0.066 3.934 14 C -0.496 4.496 15 H 0.080 0.920 16 C 0.023 3.977 17 N -0.847 5.847 18 Si 0.991 3.009 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.206 4.206 23 C -0.107 4.107 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.412 0.588 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.282 0.718 38 H 0.115 0.885 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -2.717 12.872 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 O -0.156 6.156 4 N -0.274 5.274 5 C 0.013 3.987 6 C -0.221 4.221 7 C 0.403 3.597 8 O -0.476 6.476 9 N -0.301 5.301 10 C -0.060 4.060 11 C -0.128 4.128 12 C -0.185 4.185 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.475 5.475 18 Si 0.812 3.188 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.226 4.226 23 C -0.128 4.128 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.249 0.751 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.829 -2.471 13.025 17.767 hybrid contribution 0.360 -0.219 -0.560 0.701 sum -11.469 -2.690 12.464 17.150 Atomic orbital electron populations 1.21738 0.89970 1.04324 1.03732 1.23358 0.97515 0.84043 1.01688 1.90614 1.01022 1.27162 1.96776 1.49374 0.95271 1.77702 1.05060 1.21747 0.95845 0.98639 0.82486 1.22102 1.01614 0.96036 1.02381 1.16113 0.84574 0.78361 0.80661 1.90961 1.12741 1.58817 1.85104 1.41941 1.09668 1.75966 1.02551 1.17182 0.96868 1.05746 0.86168 1.20660 0.95839 0.99489 0.96791 1.21158 1.00999 1.02306 0.94049 1.18059 0.91981 0.89624 0.93952 1.19790 0.92104 1.46906 0.93897 0.90177 1.26843 0.98905 0.91773 1.01332 1.69922 1.09785 1.38660 1.29159 0.85021 0.77959 0.78552 0.77259 1.17706 1.19301 1.19480 1.20941 0.99059 1.04663 0.97960 1.20373 1.00705 0.98892 0.92804 0.91572 0.88507 0.90831 0.93336 0.91167 0.86198 0.90907 0.94836 0.91893 0.88628 0.75087 0.88512 0.87668 0.90771 0.86713 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.01 0.21 7.10 71.98 0.51 0.72 16 3 O -0.15 -3.54 10.18 -38.77 -0.39 -3.94 16 4 N -0.49 -14.19 3.02 -478.55 -1.44 -15.63 16 5 C 0.13 3.04 6.38 86.38 0.55 3.59 16 6 C -0.16 -3.73 10.04 71.98 0.72 -3.01 16 7 C 0.70 26.92 8.04 179.06 1.44 28.36 16 8 O -0.60 -28.11 12.83 -3.98 -0.05 -28.16 16 9 N -0.65 -24.50 5.28 -316.78 -1.67 -26.17 16 10 C 0.03 1.57 6.31 38.56 0.24 1.81 16 11 C -0.11 -5.70 8.61 22.13 0.19 -5.51 16 12 C -0.16 -9.47 8.61 22.48 0.19 -9.27 16 13 C 0.07 3.70 5.55 -21.27 -0.12 3.58 16 14 C -0.50 -27.49 9.02 23.39 0.21 -27.28 16 15 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 16 C 0.02 1.20 5.42 85.24 0.46 1.66 16 17 N -0.85 -47.68 10.61 21.82 0.23 -47.45 16 18 Si 0.99 40.14 29.56 68.60 2.03 42.17 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 23 C -0.11 -4.62 9.90 22.13 0.22 -4.40 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.82 7.90 -2.39 -0.02 1.80 16 31 H 0.03 1.01 7.34 -2.39 -0.02 1.00 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.41 12.60 7.95 -92.70 -0.74 11.87 16 35 H 0.10 5.29 6.22 -2.91 -0.02 5.27 16 36 H 0.11 6.45 6.15 -2.91 -0.02 6.43 16 37 H 0.28 14.50 8.30 -92.71 -0.77 13.73 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -70.08 330.75 4.60 -65.48 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.32 Total: 34.13 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 5.59 Total: -20.43 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.88 Total: -89.25 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.45 Total: -32.10 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -70.08 4.60 -65.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878087103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.840 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds