Wall clock time and date at job start Tue Mar 31 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00009 * 2 1 4 4 C 1.50705 * 109.47071 * 293.95565 * 3 2 1 5 5 O 1.21275 * 120.00146 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00159 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47615 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99475 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00431 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99979 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99690 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47115 * 90.00033 * 12 10 8 14 14 H 1.48506 * 109.47060 * 209.99650 * 12 10 8 15 15 H 1.48493 * 109.47500 * 330.00025 * 12 10 8 16 16 C 1.39670 * 110.99951 * 123.95580 * 2 1 3 17 17 C 1.38929 * 120.07513 * 296.04434 * 16 2 1 18 18 C 1.38085 * 119.92665 * 179.97438 * 17 16 2 19 19 C 1.38305 * 120.07269 * 0.02562 * 18 17 16 20 20 C 1.38262 * 120.14953 * 0.02562 * 19 18 17 21 21 C 1.38127 * 120.07686 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.03676 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.47348 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46886 * 296.04564 * 1 2 3 25 25 H 1.09006 * 109.47136 * 56.04606 * 1 2 3 26 26 H 1.08995 * 109.47341 * 176.04281 * 1 2 3 27 27 H 1.09005 * 109.46956 * 53.95587 * 3 2 1 28 28 H 1.09000 * 109.47296 * 173.95408 * 3 2 1 29 29 H 0.97001 * 120.00107 * 0.02562 * 6 4 3 30 30 H 1.09005 * 109.47252 * 300.00281 * 7 6 4 31 31 H 1.09000 * 109.46799 * 59.99978 * 7 6 4 32 32 H 0.97004 * 119.99861 * 180.02562 * 11 10 8 33 33 H 1.07998 * 120.03900 * 0.25670 * 17 16 2 34 34 H 1.07995 * 119.96098 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.92257 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.96247 * 180.02562 * 20 19 18 37 37 H 1.09009 * 109.47038 * 120.00017 * 22 21 20 38 38 H 1.09000 * 109.47203 * 239.99567 * 22 21 20 39 39 H 0.96699 * 114.00261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4454 -2.1411 6 7 2.0180 3.3202 -1.5233 7 6 1.6700 3.9770 -2.7857 8 6 2.2099 5.3839 -2.7857 9 1 2.7579 5.7519 -1.9308 10 6 2.0043 6.2013 -3.8768 11 7 2.4760 7.4289 -3.8769 12 14 1.0558 5.5649 -5.3549 13 1 -0.3898 5.8552 -5.1778 14 1 1.5482 6.2354 -6.5851 15 1 1.2549 4.0985 -5.4769 16 6 1.9695 -0.7283 1.0816 17 6 1.7262 -0.3011 2.3810 18 6 2.2221 -1.0238 3.4480 19 6 2.9607 -2.1715 3.2243 20 6 3.2056 -2.5989 1.9324 21 6 2.7125 -1.8807 0.8605 22 6 2.9795 -2.3477 -0.5472 23 8 3.7569 -3.5462 -0.5121 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5611 1.9273 0.8310 28 1 3.0797 1.3444 0.1082 29 1 2.5234 3.8014 -0.8495 30 1 2.1050 3.4213 -3.6164 31 1 0.5857 4.0035 -2.8945 32 1 2.3310 8.0041 -4.6444 33 1 1.1461 0.5928 2.5564 34 1 2.0329 -0.6924 4.4583 35 1 3.3477 -2.7346 4.0606 36 1 3.7823 -3.4958 1.7612 37 1 2.0327 -2.5438 -1.0507 38 1 3.5258 -1.5755 -1.0887 39 1 3.9672 -3.9043 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878749577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:18 Heat of formation + Delta-G solvation = -46.749117 kcal Electronic energy + Delta-G solvation = -21202.356573 eV Core-core repulsion = 17917.285127 eV Total energy + Delta-G solvation = -3285.071446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36761 -38.89562 -36.86734 -36.14225 -34.27098 -32.39342 -31.70694 -30.17848 -28.96156 -27.16027 -26.13526 -24.82614 -22.35304 -21.55870 -20.86247 -19.85070 -17.64757 -17.29348 -16.99798 -16.02175 -15.93376 -15.62051 -15.03481 -14.96052 -14.77048 -14.36680 -14.15998 -13.91879 -13.72330 -13.42268 -12.79609 -12.63712 -12.42080 -12.33777 -12.25424 -11.74474 -11.53179 -11.34509 -11.11349 -11.03274 -10.77174 -10.40745 -9.99233 -9.52530 -9.27409 -8.92772 -8.80221 -8.66863 -8.49088 -8.16046 -6.23745 -4.26234 1.12699 1.24061 3.17721 3.25057 3.31434 3.39944 3.47876 3.59418 4.04847 4.18734 4.31374 4.76008 4.89570 4.90793 5.07921 5.11315 5.21482 5.30999 5.34207 5.44266 5.47692 5.48348 5.53723 5.60236 5.75839 5.92090 6.12626 6.23562 6.36455 6.40450 6.68471 6.73345 6.80769 7.04451 7.19843 7.32092 7.36575 7.49304 8.11120 8.48380 8.72906 8.90612 9.36238 10.88205 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.003545 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.203071 B = 7896.534823 C = 8279.142886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.489 5.489 3 C 0.039 3.961 4 C 0.502 3.498 5 O -0.541 6.541 6 N -0.706 5.706 7 C 0.222 3.778 8 C -0.545 4.545 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.892 5.892 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C 0.093 3.907 17 C -0.148 4.148 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.095 4.095 21 C -0.064 4.064 22 C 0.127 3.873 23 O -0.579 6.579 24 H 0.025 0.975 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.396 0.604 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 -18.794 12.670 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.210 5.210 3 C -0.091 4.091 4 C 0.286 3.714 5 O -0.419 6.419 6 N -0.356 5.356 7 C 0.100 3.900 8 C -0.582 4.582 9 H 0.097 0.903 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.704 3.296 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.001 4.001 17 C -0.168 4.168 18 C -0.132 4.132 19 C -0.145 4.145 20 C -0.113 4.113 21 C -0.065 4.065 22 C 0.050 3.950 23 O -0.385 6.385 24 H 0.043 0.957 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.229 0.771 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.153 -19.133 12.110 22.644 hybrid contribution -0.456 0.572 -0.258 0.776 sum -0.609 -18.560 11.853 22.030 Atomic orbital electron populations 1.22607 0.84887 1.02859 1.01807 1.59224 1.09333 1.12485 1.39945 1.22075 1.01946 0.88544 0.96508 1.20266 0.80449 0.82283 0.88363 1.90617 1.40345 1.64378 1.46564 1.46173 1.55752 1.12372 1.21271 1.19475 0.95840 0.93010 0.81651 1.21095 1.37274 0.95066 1.04805 0.90265 1.24800 0.94998 0.94544 0.98294 1.69881 1.45077 1.06891 1.31093 0.86810 0.80538 0.80099 0.82194 1.19872 1.20887 1.18481 1.18588 0.98104 0.94499 0.88875 1.21624 1.01434 1.00782 0.92992 1.21022 0.98156 0.95432 0.98611 1.21191 0.99356 0.96952 0.96976 1.20966 0.99045 0.99895 0.91409 1.19612 0.97461 0.94270 0.95161 1.20702 0.94983 0.86034 0.93315 1.86351 1.74952 1.42648 1.34513 0.95693 0.88495 0.91501 0.91726 0.88053 0.77052 0.95675 0.96207 0.92239 0.86082 0.86150 0.86059 0.84836 0.91716 0.91589 0.77025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.02 60.07 0.54 0.87 16 2 N -0.49 -6.74 3.84 -180.32 -0.69 -7.43 16 3 C 0.04 0.54 5.03 -4.97 -0.03 0.52 16 4 C 0.50 9.21 7.52 -10.98 -0.08 9.13 16 5 O -0.54 -11.72 14.33 5.56 0.08 -11.64 16 6 N -0.71 -13.91 5.55 -61.48 -0.34 -14.25 16 7 C 0.22 5.37 4.50 -5.20 -0.02 5.35 16 8 C -0.54 -14.77 9.83 -34.44 -0.34 -15.11 16 9 H 0.08 2.24 7.84 -52.48 -0.41 1.82 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 12 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 16 C 0.09 1.17 4.66 -83.79 -0.39 0.78 16 17 C -0.15 -1.63 8.66 -39.38 -0.34 -1.97 16 18 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 19 C -0.13 -1.24 10.04 -39.55 -0.40 -1.63 16 20 C -0.09 -1.06 9.37 -39.61 -0.37 -1.43 16 21 C -0.06 -0.79 5.90 -104.42 -0.62 -1.41 16 22 C 0.13 1.47 6.85 36.00 0.25 1.72 16 23 O -0.58 -5.86 12.14 -35.23 -0.43 -6.29 16 24 H 0.02 0.29 7.34 -51.93 -0.38 -0.09 16 25 H 0.10 1.53 5.83 -51.93 -0.30 1.23 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.78 7.48 -51.93 -0.39 0.39 16 28 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 30 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.12 1.22 7.14 -52.49 -0.37 0.84 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.42 7.00 -52.49 -0.37 1.06 16 37 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.38 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -32.59 326.67 -7.26 -39.85 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.62 Total: 6.42 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.29 Total: -2.62 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.26 Total: -47.23 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.35 Total: -17.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.59 -7.26 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878749577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.899 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds