Wall clock time and date at job start Tue Mar 31 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00009 * 2 1 4 4 C 1.50705 * 109.47071 * 293.95565 * 3 2 1 5 5 O 1.21275 * 120.00146 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00159 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47615 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99475 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00431 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99979 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99690 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47115 * 90.00033 * 12 10 8 14 14 H 1.48506 * 109.47060 * 209.99650 * 12 10 8 15 15 H 1.48493 * 109.47500 * 330.00025 * 12 10 8 16 16 C 1.39670 * 110.99951 * 123.95580 * 2 1 3 17 17 C 1.38929 * 120.07513 * 296.04434 * 16 2 1 18 18 C 1.38085 * 119.92665 * 179.97438 * 17 16 2 19 19 C 1.38305 * 120.07269 * 0.02562 * 18 17 16 20 20 C 1.38262 * 120.14953 * 0.02562 * 19 18 17 21 21 C 1.38127 * 120.07686 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.03676 * 180.02562 * 21 20 19 23 23 O 1.42896 * 109.47348 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46886 * 296.04564 * 1 2 3 25 25 H 1.09006 * 109.47136 * 56.04606 * 1 2 3 26 26 H 1.08995 * 109.47341 * 176.04281 * 1 2 3 27 27 H 1.09005 * 109.46956 * 53.95587 * 3 2 1 28 28 H 1.09000 * 109.47296 * 173.95408 * 3 2 1 29 29 H 0.97001 * 120.00107 * 0.02562 * 6 4 3 30 30 H 1.09005 * 109.47252 * 300.00281 * 7 6 4 31 31 H 1.09000 * 109.46799 * 59.99978 * 7 6 4 32 32 H 0.97004 * 119.99861 * 180.02562 * 11 10 8 33 33 H 1.07998 * 120.03900 * 0.25670 * 17 16 2 34 34 H 1.07995 * 119.96098 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.92257 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.96247 * 180.02562 * 20 19 18 37 37 H 1.09009 * 109.47038 * 120.00017 * 22 21 20 38 38 H 1.09000 * 109.47203 * 239.99567 * 22 21 20 39 39 H 0.96699 * 114.00261 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4454 -2.1411 6 7 2.0180 3.3202 -1.5233 7 6 1.6700 3.9770 -2.7857 8 6 2.2099 5.3839 -2.7857 9 1 2.7579 5.7519 -1.9308 10 6 2.0043 6.2013 -3.8768 11 7 2.4760 7.4289 -3.8769 12 14 1.0558 5.5649 -5.3549 13 1 -0.3898 5.8552 -5.1778 14 1 1.5482 6.2354 -6.5851 15 1 1.2549 4.0985 -5.4769 16 6 1.9695 -0.7283 1.0816 17 6 1.7262 -0.3011 2.3810 18 6 2.2221 -1.0238 3.4480 19 6 2.9607 -2.1715 3.2243 20 6 3.2056 -2.5989 1.9324 21 6 2.7125 -1.8807 0.8605 22 6 2.9795 -2.3477 -0.5472 23 8 3.7569 -3.5462 -0.5121 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5611 1.9273 0.8310 28 1 3.0797 1.3444 0.1082 29 1 2.5234 3.8014 -0.8495 30 1 2.1050 3.4213 -3.6164 31 1 0.5857 4.0035 -2.8945 32 1 2.3310 8.0041 -4.6444 33 1 1.1461 0.5928 2.5564 34 1 2.0329 -0.6924 4.4583 35 1 3.3477 -2.7346 4.0606 36 1 3.7823 -3.4958 1.7612 37 1 2.0327 -2.5438 -1.0507 38 1 3.5258 -1.5755 -1.0887 39 1 3.9672 -3.9043 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878749577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:16 Heat of formation + Delta-G solvation = -71.731584 kcal Electronic energy + Delta-G solvation = -21203.439894 eV Core-core repulsion = 17917.285127 eV Total energy + Delta-G solvation = -3286.154767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38526 -40.22889 -37.77591 -37.11309 -36.05113 -34.40938 -32.52021 -31.23831 -30.39882 -28.65901 -27.03087 -25.86344 -24.05511 -22.64037 -21.79971 -21.35589 -19.17249 -18.40399 -18.04834 -17.57656 -17.05832 -16.84589 -16.27983 -16.14120 -16.02219 -15.71941 -15.32024 -14.97436 -14.73606 -14.67886 -14.52312 -14.12864 -13.97371 -13.30858 -13.17355 -13.03396 -12.84599 -12.76501 -12.58987 -12.16130 -11.96101 -11.93223 -11.65730 -11.22707 -10.91887 -10.77370 -9.92430 -9.74766 -9.52757 -9.46815 -8.40129 -6.47145 0.30155 0.43543 1.32698 1.35233 1.47613 1.71970 2.22945 2.28423 2.77179 2.94876 2.95763 3.30066 3.84926 3.99426 4.11377 4.16769 4.21501 4.25527 4.41300 4.42692 4.51134 4.61361 4.63787 4.70725 4.79298 4.91174 5.02825 5.04029 5.13959 5.26531 5.46541 5.53127 5.56611 5.59779 5.69899 5.92258 6.09451 6.40013 6.54150 6.85459 6.87650 7.15879 7.42021 8.74636 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.003545 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.203071 B = 7896.534823 C = 8279.142886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.501 5.501 3 C 0.052 3.948 4 C 0.503 3.497 5 O -0.574 6.574 6 N -0.707 5.707 7 C 0.235 3.765 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.026 3.974 11 N -0.932 5.932 12 Si 0.938 3.062 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.260 1.260 16 C 0.078 3.922 17 C -0.151 4.151 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.083 4.083 22 C 0.133 3.867 23 O -0.584 6.584 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.408 0.592 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.272 0.728 33 H 0.132 0.868 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -20.086 14.211 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.222 5.222 3 C -0.078 4.078 4 C 0.290 3.710 5 O -0.454 6.454 6 N -0.358 5.358 7 C 0.111 3.889 8 C -0.585 4.585 9 H 0.077 0.923 10 C -0.174 4.174 11 N -0.571 5.571 12 Si 0.762 3.238 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.184 1.184 16 C -0.016 4.016 17 C -0.171 4.171 18 C -0.130 4.130 19 C -0.141 4.141 20 C -0.122 4.122 21 C -0.084 4.084 22 C 0.056 3.944 23 O -0.393 6.393 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.244 0.756 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.308 -20.443 13.673 24.597 hybrid contribution -0.353 0.911 -0.644 1.170 sum -0.661 -19.532 13.029 23.488 Atomic orbital electron populations 1.22498 0.84970 1.02838 1.01331 1.59094 1.09440 1.12331 1.41366 1.21985 1.02956 0.88751 0.94086 1.21023 0.79077 0.81377 0.89537 1.90606 1.41673 1.64978 1.48189 1.46014 1.56378 1.13150 1.20211 1.19061 0.94927 0.91498 0.83429 1.21309 1.36634 0.96418 1.04117 0.92280 1.25608 0.95964 0.94699 1.01180 1.69984 1.46636 1.08157 1.32284 0.85848 0.79521 0.79410 0.79046 1.18965 1.19918 1.18443 1.18592 0.99142 0.94796 0.89035 1.21778 1.01455 1.01281 0.92608 1.21351 0.97184 0.94951 0.99546 1.21524 0.98478 0.96938 0.97111 1.21086 0.99249 0.99994 0.91886 1.19791 0.98171 0.94790 0.95664 1.20528 0.94534 0.86152 0.93197 1.86315 1.74664 1.42087 1.36242 0.94023 0.91245 0.91002 0.89163 0.86565 0.75647 0.97051 0.96988 0.91862 0.85053 0.83506 0.83478 0.84744 0.92508 0.92831 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.02 127.69 1.15 1.92 16 2 N -0.50 -13.22 3.84 -724.42 -2.78 -16.00 16 3 C 0.05 1.35 5.03 85.56 0.43 1.78 16 4 C 0.50 18.14 7.52 87.66 0.66 18.80 16 5 O -0.57 -24.95 14.33 -3.01 -0.04 -25.00 16 6 N -0.71 -27.52 5.55 -466.80 -2.59 -30.11 16 7 C 0.23 11.35 4.50 85.63 0.38 11.74 16 8 C -0.55 -29.95 9.83 25.60 0.25 -29.70 16 9 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 10 C 0.03 1.45 5.47 84.65 0.46 1.91 16 11 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 12 Si 0.94 43.85 27.47 68.60 1.88 45.73 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 16 C 0.08 1.81 4.66 38.21 0.18 1.99 16 17 C -0.15 -2.90 8.66 22.40 0.19 -2.71 16 18 C -0.11 -1.79 10.04 22.25 0.22 -1.57 16 19 C -0.12 -2.01 10.04 22.29 0.22 -1.79 16 20 C -0.10 -2.12 9.37 22.25 0.21 -1.92 16 21 C -0.08 -1.95 5.90 -19.74 -0.12 -2.07 16 22 C 0.13 3.05 6.85 71.23 0.49 3.54 16 23 O -0.58 -11.37 12.14 -148.98 -1.81 -13.18 16 24 H 0.04 0.91 7.34 -2.39 -0.02 0.89 16 25 H 0.07 2.19 5.83 -2.38 -0.01 2.17 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.92 7.48 -2.38 -0.02 1.90 16 28 H 0.12 2.72 8.06 -2.39 -0.02 2.70 16 29 H 0.41 13.84 8.32 -92.71 -0.77 13.06 16 30 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 31 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.13 2.20 7.14 -2.91 -0.02 2.17 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.13 2.66 7.00 -2.91 -0.02 2.64 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.40 4.29 9.12 -74.06 -0.68 3.62 16 Total: -1.00 -69.86 326.67 -0.72 -70.58 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.43 Total: 21.22 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.74 Total: 1.93 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.07 Total: -101.30 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.85 Total: -38.18 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -69.86 -0.72 -70.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878749577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.149 kcal (2) G-P(sol) polarization free energy of solvation -69.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds