Wall clock time and date at job start Tue Mar 31 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35324 * 122.51824 * 2 1 4 4 O 1.21226 * 126.13218 * 359.96982 * 3 2 1 5 5 C 1.51214 * 108.55106 * 180.25079 * 3 2 1 6 6 H 1.08999 * 112.67987 * 121.84354 * 5 3 2 7 7 C 1.54289 * 109.21081 * 247.82039 * 5 3 2 8 8 N 1.48522 * 104.70940 * 134.87210 * 7 5 3 9 9 C 1.46895 * 110.99658 * 200.72747 * 8 7 5 10 10 C 1.53005 * 109.47029 * 175.16043 * 9 8 7 11 11 C 1.50696 * 115.54956 * 268.88614 * 10 9 8 12 12 H 1.08000 * 119.99958 * 114.49272 * 11 10 9 13 13 C 1.37876 * 120.00109 * 294.49280 * 11 10 9 14 14 N 1.31508 * 119.99957 * 350.36870 * 13 11 10 15 15 Si 1.86805 * 119.99879 * 170.37405 * 13 11 10 16 16 H 1.48499 * 109.47305 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47153 * 120.00213 * 15 13 11 18 18 H 1.48498 * 109.46929 * 239.99642 * 15 13 11 19 19 C 1.52996 * 117.50089 * 123.17565 * 10 9 8 20 20 C 1.52996 * 117.49582 * 54.55359 * 10 9 8 21 21 C 1.48514 * 104.20585 * 320.27753 * 8 7 5 22 22 C 1.54292 * 104.71250 * 39.72437 * 21 8 7 23 23 H 1.08996 * 112.12433 * 98.83462 * 22 21 8 24 24 C 1.33810 * 122.73850 * 179.47046 * 2 1 3 25 25 O 1.21222 * 125.30776 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.46876 * 270.52995 * 1 2 3 27 27 H 1.08994 * 109.47078 * 30.52388 * 1 2 3 28 28 H 1.08996 * 109.47518 * 150.53171 * 1 2 3 29 29 H 1.09001 * 110.38720 * 253.67801 * 7 5 3 30 30 H 1.08997 * 110.38985 * 15.95166 * 7 5 3 31 31 H 1.08994 * 109.47552 * 295.16320 * 9 8 7 32 32 H 1.08998 * 109.47197 * 55.16460 * 9 8 7 33 33 H 0.97000 * 120.00037 * 185.01851 * 14 13 11 34 34 H 1.09006 * 117.49511 * 0.02562 * 19 10 9 35 35 H 1.08992 * 117.49995 * 145.02051 * 19 10 9 36 36 H 1.08999 * 117.49920 * 214.98122 * 20 10 9 37 37 H 1.08995 * 117.50242 * 359.97438 * 20 10 9 38 38 H 1.09002 * 110.39241 * 158.53415 * 21 8 7 39 39 H 1.08997 * 110.38934 * 280.80305 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1925 1.1411 0.0000 4 8 1.7512 2.2701 -0.0005 5 6 3.6599 0.7761 -0.0063 6 1 4.1927 1.1916 -0.8616 7 6 4.2903 1.1842 1.3415 8 7 5.1155 0.0157 1.7410 9 6 5.3821 0.0288 3.1855 10 6 6.1289 -1.2477 3.5779 11 6 5.2604 -2.4067 3.9944 12 1 5.2344 -3.3047 3.3949 13 6 4.4991 -2.3207 5.1407 14 7 4.6697 -1.3140 5.9694 15 14 3.2254 -3.6345 5.5167 16 1 3.2289 -4.6515 4.4346 17 1 3.5532 -4.2860 6.8102 18 1 1.8810 -3.0098 5.6039 19 6 7.4796 -1.0889 4.2786 20 6 7.4226 -1.5684 2.8269 21 6 4.2903 -1.1597 1.3627 22 6 3.6599 -0.7761 0.0077 23 1 4.2021 -1.2070 -0.8340 24 6 2.1887 -1.1255 0.0104 25 8 1.7355 -2.2498 0.0212 26 1 -0.3633 0.0095 1.0276 27 1 -0.3633 0.8852 -0.5219 28 1 -0.3634 -0.8947 -0.5055 29 1 4.9175 2.0668 1.2157 30 1 3.5135 1.3736 2.0822 31 1 5.9916 0.8974 3.4347 32 1 4.4385 0.0792 3.7287 33 1 4.1871 -1.2910 6.8105 34 1 7.8361 -0.0750 4.4605 35 1 7.7403 -1.8227 5.0412 36 1 7.6459 -2.6178 2.6343 37 1 7.7416 -0.8703 2.0530 38 1 4.9174 -2.0445 1.2529 39 1 3.5148 -1.3350 2.1082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879535279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:41 Heat of formation + Delta-G solvation = -22.995037 kcal Electronic energy + Delta-G solvation = -22717.285084 eV Core-core repulsion = 19433.243692 eV Total energy + Delta-G solvation = -3284.041392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08721 -38.60014 -38.20535 -36.18992 -35.49111 -32.16868 -31.97705 -29.18664 -27.80654 -25.81742 -24.79191 -24.36578 -21.30003 -21.15129 -20.82351 -19.69119 -18.76938 -17.42768 -16.58189 -16.30093 -16.10077 -15.31725 -15.01995 -14.64828 -14.59924 -14.06463 -14.00509 -13.46293 -13.31335 -13.18742 -12.71881 -12.55555 -12.37506 -11.75406 -11.47419 -11.39663 -11.11339 -10.98701 -10.88461 -10.76764 -10.54161 -10.43113 -10.13092 -9.91386 -9.81770 -9.36510 -8.92519 -8.51896 -8.21330 -7.81844 -6.10014 -4.13772 1.47813 2.44298 2.67310 3.23117 3.33201 3.38472 3.95083 4.10075 4.29492 4.35121 4.62305 4.73611 5.03691 5.14112 5.18292 5.20164 5.34845 5.41570 5.45406 5.52055 5.52719 5.84968 5.87725 6.06479 6.24854 6.43490 6.49431 6.50937 6.70396 6.73342 6.84183 6.86535 7.11406 7.18156 7.25683 7.46931 7.60448 7.68004 7.74841 7.85841 8.41135 8.87079 9.50022 10.97426 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.006950 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.749193 B = 4027.694383 C = 4844.043489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.582 5.582 3 C 0.537 3.463 4 O -0.479 6.479 5 C -0.124 4.124 6 H 0.136 0.864 7 C 0.046 3.954 8 N -0.498 5.498 9 C 0.091 3.909 10 C 0.048 3.952 11 C -0.494 4.494 12 H 0.061 0.939 13 C 0.071 3.929 14 N -0.876 5.876 15 Si 0.880 3.120 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.173 4.173 20 C -0.193 4.193 21 C 0.068 3.932 22 C -0.128 4.128 23 H 0.136 0.864 24 C 0.535 3.465 25 O -0.477 6.477 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 4.357 -11.737 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.327 5.327 3 C 0.326 3.674 4 O -0.350 6.350 5 C -0.146 4.146 6 H 0.154 0.846 7 C -0.083 4.083 8 N -0.222 5.222 9 C -0.036 4.036 10 C 0.048 3.952 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.132 4.132 14 N -0.513 5.513 15 Si 0.707 3.293 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.212 4.212 20 C -0.230 4.230 21 C -0.060 4.060 22 C -0.150 4.150 23 H 0.154 0.846 24 C 0.323 3.677 25 O -0.347 6.347 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.469 4.468 -11.811 13.096 hybrid contribution -1.658 -0.639 0.940 2.010 sum -5.127 3.829 -10.872 12.615 Atomic orbital electron populations 1.21907 0.77555 1.04307 1.03668 1.47012 1.09461 1.09369 1.66825 1.21159 0.89829 0.83521 0.72864 1.90740 1.78405 1.20455 1.45392 1.22909 0.92465 0.96167 1.03017 0.84623 1.22954 0.96330 0.96863 0.92139 1.65596 1.37653 0.99812 1.19107 1.21854 1.00236 0.97856 0.83629 1.18744 0.85669 0.93541 0.97289 1.20550 1.24060 0.99689 1.08844 0.92082 1.24966 0.96741 0.95334 0.96161 1.69991 1.41573 1.30596 1.09120 0.86718 0.81853 0.82221 0.78494 1.19373 1.20953 1.21056 1.22720 1.05452 0.99147 0.93847 1.22762 1.06422 0.99496 0.94335 1.22848 0.96596 0.96160 0.90408 1.23046 0.92586 0.95078 1.04292 0.84650 1.20767 0.89937 0.83556 0.73394 1.90761 1.77666 1.21216 1.45076 0.91092 0.89693 0.89527 0.88893 0.93628 0.92882 0.93227 0.93031 0.92070 0.90522 0.91073 0.90771 0.87768 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.59 59.85 0.63 1.38 16 2 N -0.58 -7.91 2.99 -122.43 -0.37 -8.27 16 3 C 0.54 7.39 7.14 -10.49 -0.07 7.31 16 4 O -0.48 -7.56 17.56 5.60 0.10 -7.46 16 5 C -0.12 -1.52 4.13 -89.67 -0.37 -1.89 16 6 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 7 C 0.05 0.67 6.03 -2.25 -0.01 0.66 16 8 N -0.50 -8.63 5.22 -230.17 -1.20 -9.83 16 9 C 0.09 1.93 4.84 -3.82 -0.02 1.91 16 10 C 0.05 1.11 0.85 -155.66 -0.13 0.98 16 11 C -0.49 -12.62 7.39 -34.44 -0.25 -12.88 16 12 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 13 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 14 N -0.88 -23.96 12.85 55.43 0.71 -23.25 16 15 Si 0.88 20.79 29.55 -169.99 -5.02 15.77 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 C -0.17 -3.89 9.88 -26.73 -0.26 -4.15 16 20 C -0.19 -3.98 9.72 -26.73 -0.26 -4.23 16 21 C 0.07 1.18 4.56 -2.25 -0.01 1.17 16 22 C -0.13 -1.71 4.13 -89.66 -0.37 -2.08 16 23 H 0.14 1.46 8.14 -51.93 -0.42 1.03 16 24 C 0.53 7.99 7.13 -11.16 -0.08 7.91 16 25 O -0.48 -8.46 17.47 5.61 0.10 -8.36 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 28 H 0.09 0.88 7.82 -51.93 -0.41 0.48 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 31 H 0.05 1.09 7.87 -51.93 -0.41 0.69 16 32 H 0.05 1.19 7.27 -51.93 -0.38 0.81 16 33 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 34 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 35 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.10 1.91 7.76 -51.93 -0.40 1.50 16 39 H 0.06 1.20 7.35 -51.93 -0.38 0.82 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -29.35 323.14 -7.82 -37.17 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.70 Total: 1.50 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.31 Total: -2.13 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.86 Total: -41.35 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.20 Total: -15.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.35 -7.82 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879535279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.172 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds