Wall clock time and date at job start Tue Mar 31 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35324 * 122.51824 * 2 1 4 4 O 1.21226 * 126.13218 * 359.96982 * 3 2 1 5 5 C 1.51214 * 108.55106 * 180.25079 * 3 2 1 6 6 H 1.08999 * 112.67987 * 121.84354 * 5 3 2 7 7 C 1.54289 * 109.21081 * 247.82039 * 5 3 2 8 8 N 1.48522 * 104.70940 * 134.87210 * 7 5 3 9 9 C 1.46895 * 110.99658 * 200.72747 * 8 7 5 10 10 C 1.53005 * 109.47029 * 175.16043 * 9 8 7 11 11 C 1.50696 * 115.54956 * 268.88614 * 10 9 8 12 12 H 1.08000 * 119.99958 * 114.49272 * 11 10 9 13 13 C 1.37876 * 120.00109 * 294.49280 * 11 10 9 14 14 N 1.31508 * 119.99957 * 350.36870 * 13 11 10 15 15 Si 1.86805 * 119.99879 * 170.37405 * 13 11 10 16 16 H 1.48499 * 109.47305 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47153 * 120.00213 * 15 13 11 18 18 H 1.48498 * 109.46929 * 239.99642 * 15 13 11 19 19 C 1.52996 * 117.50089 * 123.17565 * 10 9 8 20 20 C 1.52996 * 117.49582 * 54.55359 * 10 9 8 21 21 C 1.48514 * 104.20585 * 320.27753 * 8 7 5 22 22 C 1.54292 * 104.71250 * 39.72437 * 21 8 7 23 23 H 1.08996 * 112.12433 * 98.83462 * 22 21 8 24 24 C 1.33810 * 122.73850 * 179.47046 * 2 1 3 25 25 O 1.21222 * 125.30776 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.46876 * 270.52995 * 1 2 3 27 27 H 1.08994 * 109.47078 * 30.52388 * 1 2 3 28 28 H 1.08996 * 109.47518 * 150.53171 * 1 2 3 29 29 H 1.09001 * 110.38720 * 253.67801 * 7 5 3 30 30 H 1.08997 * 110.38985 * 15.95166 * 7 5 3 31 31 H 1.08994 * 109.47552 * 295.16320 * 9 8 7 32 32 H 1.08998 * 109.47197 * 55.16460 * 9 8 7 33 33 H 0.97000 * 120.00037 * 185.01851 * 14 13 11 34 34 H 1.09006 * 117.49511 * 0.02562 * 19 10 9 35 35 H 1.08992 * 117.49995 * 145.02051 * 19 10 9 36 36 H 1.08999 * 117.49920 * 214.98122 * 20 10 9 37 37 H 1.08995 * 117.50242 * 359.97438 * 20 10 9 38 38 H 1.09002 * 110.39241 * 158.53415 * 21 8 7 39 39 H 1.08997 * 110.38934 * 280.80305 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1925 1.1411 0.0000 4 8 1.7512 2.2701 -0.0005 5 6 3.6599 0.7761 -0.0063 6 1 4.1927 1.1916 -0.8616 7 6 4.2903 1.1842 1.3415 8 7 5.1155 0.0157 1.7410 9 6 5.3821 0.0288 3.1855 10 6 6.1289 -1.2477 3.5779 11 6 5.2604 -2.4067 3.9944 12 1 5.2344 -3.3047 3.3949 13 6 4.4991 -2.3207 5.1407 14 7 4.6697 -1.3140 5.9694 15 14 3.2254 -3.6345 5.5167 16 1 3.2289 -4.6515 4.4346 17 1 3.5532 -4.2860 6.8102 18 1 1.8810 -3.0098 5.6039 19 6 7.4796 -1.0889 4.2786 20 6 7.4226 -1.5684 2.8269 21 6 4.2903 -1.1597 1.3627 22 6 3.6599 -0.7761 0.0077 23 1 4.2021 -1.2070 -0.8340 24 6 2.1887 -1.1255 0.0104 25 8 1.7355 -2.2498 0.0212 26 1 -0.3633 0.0095 1.0276 27 1 -0.3633 0.8852 -0.5219 28 1 -0.3634 -0.8947 -0.5055 29 1 4.9175 2.0668 1.2157 30 1 3.5135 1.3736 2.0822 31 1 5.9916 0.8974 3.4347 32 1 4.4385 0.0792 3.7287 33 1 4.1871 -1.2910 6.8105 34 1 7.8361 -0.0750 4.4605 35 1 7.7403 -1.8227 5.0412 36 1 7.6459 -2.6178 2.6343 37 1 7.7416 -0.8703 2.0530 38 1 4.9174 -2.0445 1.2529 39 1 3.5148 -1.3350 2.1082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879535279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:41 Heat of formation + Delta-G solvation = -42.466677 kcal Electronic energy + Delta-G solvation = -22718.129438 eV Core-core repulsion = 19433.243692 eV Total energy + Delta-G solvation = -3284.885746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.23529 -39.80608 -39.65108 -37.73768 -36.72826 -34.07451 -33.34603 -30.41836 -28.99596 -27.68712 -26.27861 -25.57392 -22.86414 -22.55942 -22.16148 -20.92347 -20.47242 -18.55033 -18.10241 -17.60330 -17.44528 -16.79738 -16.40062 -16.25511 -15.91982 -15.64803 -15.29280 -14.89349 -14.77435 -14.37417 -14.13935 -13.74723 -13.58450 -13.44197 -13.05357 -12.93427 -12.68155 -12.60922 -12.41431 -12.38944 -12.15098 -11.90382 -11.69530 -11.18180 -11.08870 -10.92974 -10.84348 -10.39930 -9.98399 -9.37862 -8.13427 -6.19282 0.32404 1.30741 1.35913 1.37307 1.45842 1.56203 2.37316 2.86228 2.90018 3.12899 3.18904 3.25592 3.60726 3.77594 4.07937 4.14731 4.24155 4.29148 4.30387 4.36609 4.39729 4.63237 4.63541 4.71508 4.74812 4.84273 4.92222 4.97855 5.05904 5.14841 5.19759 5.35238 5.56877 5.63017 5.74083 5.75339 6.02139 6.10316 6.12834 6.44628 6.61429 6.87179 7.45640 8.93795 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.006950 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.749193 B = 4027.694383 C = 4844.043489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.585 5.585 3 C 0.539 3.461 4 O -0.497 6.497 5 C -0.107 4.107 6 H 0.181 0.819 7 C 0.043 3.957 8 N -0.487 5.487 9 C 0.107 3.893 10 C 0.024 3.976 11 C -0.494 4.494 12 H 0.052 0.948 13 C 0.030 3.970 14 N -0.903 5.903 15 Si 0.926 3.074 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.289 1.289 19 C -0.182 4.182 20 C -0.162 4.162 21 C 0.070 3.930 22 C -0.116 4.116 23 H 0.173 0.827 24 C 0.534 3.466 25 O -0.510 6.510 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 5.053 -13.952 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.328 5.328 3 C 0.330 3.670 4 O -0.370 6.370 5 C -0.128 4.128 6 H 0.198 0.802 7 C -0.086 4.086 8 N -0.210 5.210 9 C -0.021 4.021 10 C 0.023 3.977 11 C -0.532 4.532 12 H 0.070 0.930 13 C -0.170 4.170 14 N -0.541 5.541 15 Si 0.753 3.247 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.215 1.215 19 C -0.220 4.220 20 C -0.199 4.199 21 C -0.059 4.059 22 C -0.137 4.137 23 H 0.191 0.809 24 C 0.324 3.676 25 O -0.383 6.383 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.899 5.165 -14.037 15.236 hybrid contribution -1.855 -0.852 1.632 2.613 sum -4.754 4.313 -12.406 13.968 Atomic orbital electron populations 1.22093 0.76378 1.05591 1.03951 1.47103 1.10494 1.09073 1.66114 1.21360 0.90427 0.83112 0.72127 1.90741 1.78842 1.21104 1.46280 1.22984 0.91603 0.95077 1.03112 0.80179 1.23051 0.96028 0.96641 0.92835 1.65561 1.38269 1.00901 1.16271 1.21511 0.98090 0.96986 0.85517 1.18820 0.86150 0.93743 0.98980 1.20765 1.24031 1.00155 1.08249 0.93026 1.25492 0.98180 0.96866 0.96480 1.70068 1.42663 1.31932 1.09441 0.85984 0.79906 0.80486 0.78294 1.19239 1.20594 1.21528 1.22672 1.05342 0.99334 0.94697 1.22742 1.03594 1.00034 0.93572 1.22668 0.95415 0.96070 0.91714 1.23051 0.91515 0.96069 1.03058 0.80941 1.21010 0.90746 0.83291 0.72537 1.90746 1.78334 1.22491 1.46695 0.91352 0.88039 0.88680 0.86365 0.95829 0.92420 0.97080 0.93291 0.90945 0.92647 0.91014 0.88367 0.88842 0.96313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 10.59 127.77 1.35 2.63 16 2 N -0.58 -14.98 2.99 -778.32 -2.33 -17.30 16 3 C 0.54 13.59 7.14 87.73 0.63 14.21 16 4 O -0.50 -14.62 17.56 -2.86 -0.05 -14.67 16 5 C -0.11 -2.24 4.13 -10.18 -0.04 -2.29 16 6 H 0.18 2.32 8.14 -2.39 -0.02 2.30 16 7 C 0.04 1.16 6.03 86.43 0.52 1.68 16 8 N -0.49 -16.06 5.22 -882.12 -4.60 -20.66 16 9 C 0.11 4.49 4.84 86.31 0.42 4.91 16 10 C 0.02 1.08 0.85 -52.93 -0.05 1.04 16 11 C -0.49 -25.63 7.39 25.60 0.19 -25.44 16 12 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 13 C 0.03 1.63 5.16 84.66 0.44 2.06 16 14 N -0.90 -50.57 12.85 21.45 0.28 -50.30 16 15 Si 0.93 43.56 29.55 68.60 2.03 45.59 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 C -0.18 -8.08 9.88 30.59 0.30 -7.78 16 20 C -0.16 -6.39 9.72 30.59 0.30 -6.09 16 21 C 0.07 2.36 4.56 86.43 0.39 2.76 16 22 C -0.12 -2.78 4.13 -10.17 -0.04 -2.82 16 23 H 0.17 2.94 8.14 -2.39 -0.02 2.92 16 24 C 0.53 15.26 7.13 87.97 0.63 15.88 16 25 O -0.51 -17.83 17.47 -2.85 -0.05 -17.88 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.80 7.87 -2.39 -0.02 1.78 16 28 H 0.09 1.84 7.82 -2.39 -0.02 1.82 16 29 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.02 0.75 7.49 -2.39 -0.02 0.73 16 31 H 0.06 2.33 7.87 -2.39 -0.02 2.31 16 32 H 0.01 0.54 7.27 -2.39 -0.02 0.52 16 33 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 34 H 0.07 3.01 8.03 -2.38 -0.02 2.99 16 35 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.09 3.35 7.76 -2.39 -0.02 3.33 16 39 H 0.02 0.78 7.35 -2.39 -0.02 0.76 16 Total: -1.00 -64.46 323.14 1.35 -63.11 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.04 Total: 11.35 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.04 Total: 0.76 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -6.65 Total: -88.26 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.10 Total: -32.55 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.46 1.35 -63.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879535279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -64.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds