Wall clock time and date at job start Tue Mar 31 2020 00:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47246 * 2 1 4 4 N 1.41606 * 113.99884 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00111 * 269.99836 * 4 3 2 6 6 C 1.52999 * 109.47282 * 255.00212 * 5 4 3 7 7 C 1.34781 * 119.99777 * 89.99981 * 4 3 2 8 8 O 1.21580 * 119.99791 * 179.97438 * 7 4 3 9 9 N 1.34780 * 120.00069 * 0.02562 * 7 4 3 10 10 C 1.39953 * 120.00040 * 185.16515 * 9 7 4 11 11 C 1.39289 * 119.94856 * 214.21118 * 10 9 7 12 12 C 1.38489 * 120.42992 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.31975 * 0.29349 * 12 11 10 14 14 C 1.40744 * 119.88293 * 359.47772 * 13 12 11 15 15 C 1.41407 * 120.20581 * 180.27094 * 14 13 12 16 16 H 1.08007 * 119.99846 * 205.28722 * 15 14 13 17 17 C 1.39927 * 120.00571 * 25.29057 * 15 14 13 18 18 N 1.30836 * 119.99649 * 16.70326 * 17 15 14 19 19 Si 1.86796 * 120.00450 * 196.70329 * 17 15 14 20 20 H 1.48504 * 109.47172 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47419 * 119.99675 * 19 17 15 22 22 H 1.48497 * 109.47252 * 240.00041 * 19 17 15 23 23 C 1.38238 * 119.94477 * 34.22469 * 10 9 7 24 24 H 1.09000 * 109.47197 * 59.99858 * 1 2 3 25 25 H 1.08997 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47180 * 300.00176 * 1 2 3 27 27 H 1.09001 * 109.47003 * 239.99373 * 2 1 3 28 28 H 1.08998 * 109.46699 * 120.00022 * 2 1 3 29 29 H 1.09001 * 109.46665 * 15.00199 * 5 4 3 30 30 H 1.08994 * 109.46969 * 134.99899 * 5 4 3 31 31 H 1.09004 * 109.47047 * 59.99520 * 6 5 4 32 32 H 1.09000 * 109.46941 * 180.02562 * 6 5 4 33 33 H 1.09008 * 109.47077 * 299.99996 * 6 5 4 34 34 H 0.96997 * 119.99958 * 5.15784 * 9 7 4 35 35 H 1.07999 * 119.78124 * 359.97438 * 11 10 9 36 36 H 1.07998 * 119.83752 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.05440 * 179.72684 * 13 12 11 38 38 H 0.97006 * 119.99806 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.16229 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4180 1.4589 0.0006 5 6 4.1477 1.5170 1.2696 6 6 4.6141 2.9517 1.5246 7 6 4.0902 1.5119 -1.1664 8 8 5.3022 1.6084 -1.1659 9 7 3.4189 1.4591 -2.3339 10 6 4.1212 1.4050 -3.5432 11 6 3.6066 2.0331 -4.6749 12 6 4.2936 1.9864 -5.8765 13 6 5.4909 1.3127 -5.9669 14 6 6.0256 0.6774 -4.8305 15 6 7.2576 -0.0115 -4.9142 16 1 7.4767 -0.8121 -4.2231 17 6 8.1930 0.3439 -5.8923 18 7 8.0911 1.4939 -6.5077 19 14 9.5873 -0.8236 -6.3194 20 1 9.4798 -2.0486 -5.4869 21 1 9.5025 -1.1916 -7.7555 22 1 10.8884 -0.1585 -6.0548 23 6 5.3245 0.7281 -3.6126 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.4924 1.1984 2.0803 30 1 5.0134 0.8566 1.2213 31 1 3.7483 3.6121 1.5727 32 1 5.1574 2.9947 2.4685 33 1 5.2694 3.2702 0.7137 34 1 2.4489 1.4584 -2.3360 35 1 2.6658 2.5600 -4.6149 36 1 3.8859 2.4771 -6.7480 37 1 6.0208 1.2753 -6.9072 38 1 8.7393 1.7402 -7.1860 39 1 5.7245 0.2409 -2.7357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879844758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:27 Heat of formation + Delta-G solvation = -22.828859 kcal Electronic energy + Delta-G solvation = -21653.278944 eV Core-core repulsion = 18369.244758 eV Total energy + Delta-G solvation = -3284.034186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61736 -39.44319 -38.49202 -36.41346 -35.22787 -34.81074 -32.27290 -31.75662 -30.78270 -29.18511 -27.25183 -24.87349 -23.99173 -22.97948 -22.54844 -21.43480 -19.97898 -19.54705 -17.99148 -17.39006 -16.91392 -16.62546 -16.41924 -16.22082 -15.89718 -15.63027 -15.03866 -14.83558 -14.66109 -14.03078 -13.84335 -13.61426 -13.47181 -13.22853 -13.14051 -12.96405 -12.81557 -12.59465 -12.51727 -12.21682 -12.10366 -12.00355 -11.59170 -11.49921 -11.25209 -11.01222 -10.70828 -10.15602 -9.39410 -8.71603 -8.61713 -6.36453 0.64969 0.93086 1.03927 1.37227 1.48936 1.53205 1.93966 2.20212 2.26692 2.73953 3.64533 3.74366 4.01988 4.05865 4.16068 4.24764 4.37207 4.44685 4.46286 4.62153 4.70247 4.83746 4.94685 4.98055 5.01849 5.09030 5.11641 5.16449 5.23288 5.28773 5.32813 5.42070 5.67887 5.80847 6.03568 6.09364 6.13928 6.35191 6.68077 6.89179 6.94013 7.00854 7.38819 8.34884 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021444 B = 0.004429 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.426398 B = 6320.556907 C = 6839.334597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.011 3.989 3 O -0.149 6.149 4 N -0.490 5.490 5 C 0.132 3.868 6 C -0.163 4.163 7 C 0.703 3.297 8 O -0.590 6.590 9 N -0.666 5.666 10 C 0.173 3.827 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.197 4.197 14 C 0.091 3.909 15 C -0.500 4.500 16 H 0.066 0.934 17 C 0.036 3.964 18 N -0.824 5.824 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.266 1.266 23 C -0.236 4.236 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.289 0.711 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 -2.079 12.110 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 O -0.154 6.154 4 N -0.273 5.273 5 C 0.012 3.988 6 C -0.221 4.221 7 C 0.406 3.594 8 O -0.468 6.468 9 N -0.314 5.314 10 C 0.080 3.920 11 C -0.275 4.275 12 C -0.106 4.106 13 C -0.217 4.217 14 C 0.088 3.912 15 C -0.530 4.530 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.181 1.181 22 H -0.191 1.191 23 C -0.258 4.258 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.840 -1.694 12.028 16.962 hybrid contribution 0.367 -0.529 -0.268 0.698 sum -11.472 -2.224 11.759 16.578 Atomic orbital electron populations 1.21735 0.89809 1.04358 1.03804 1.23364 0.97637 0.84010 1.01636 1.90609 1.00862 1.27159 1.96772 1.49390 0.95386 1.77496 1.04994 1.21776 0.95874 0.98730 0.82398 1.22106 1.01648 0.95972 1.02391 1.16088 0.84612 0.78037 0.80671 1.91016 1.12672 1.58027 1.85097 1.42418 1.10036 1.76064 1.02901 1.17340 0.93110 0.97162 0.84430 1.20415 1.03953 1.10207 0.92887 1.20811 0.94534 0.98232 0.97042 1.21311 0.96729 1.05306 0.98392 1.17824 0.92434 0.90294 0.90605 1.19780 1.00932 1.17191 1.15081 0.91585 1.26749 1.01351 0.96125 0.93646 1.69887 1.35150 1.19609 1.20399 0.85136 0.76609 0.78550 0.79221 1.18545 1.18124 1.19063 1.20870 0.99115 1.09024 0.96769 0.91561 0.88526 0.90646 0.93618 0.91042 0.85965 0.90960 0.91722 0.88510 0.94998 0.74756 0.85487 0.85746 0.87616 0.90041 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.01 0.21 7.10 71.98 0.51 0.72 16 3 O -0.15 -3.61 10.18 -38.80 -0.40 -4.00 16 4 N -0.49 -14.66 3.02 -478.54 -1.44 -16.11 16 5 C 0.13 3.14 6.38 86.38 0.55 3.69 16 6 C -0.16 -3.85 10.04 71.98 0.72 -3.13 16 7 C 0.70 28.17 7.94 179.05 1.42 29.59 16 8 O -0.59 -29.18 13.16 -3.97 -0.05 -29.23 16 9 N -0.67 -25.98 5.31 -317.32 -1.68 -27.66 16 10 C 0.17 8.23 6.26 38.10 0.24 8.47 16 11 C -0.25 -11.17 9.97 22.58 0.23 -10.94 16 12 C -0.09 -4.10 10.02 22.20 0.22 -3.87 16 13 C -0.20 -10.81 8.69 22.75 0.20 -10.61 16 14 C 0.09 5.34 5.57 -21.31 -0.12 5.23 16 15 C -0.50 -29.31 9.05 23.46 0.21 -29.10 16 16 H 0.07 3.83 7.90 -2.91 -0.02 3.81 16 17 C 0.04 1.92 5.16 85.25 0.44 2.36 16 18 N -0.82 -45.16 10.94 21.82 0.24 -44.92 16 19 Si 0.98 40.35 29.59 68.60 2.03 42.38 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 C -0.24 -13.10 8.39 22.85 0.19 -12.91 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.89 7.90 -2.39 -0.02 1.88 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.03 1.00 7.34 -2.38 -0.02 0.98 16 34 H 0.41 13.15 7.95 -92.71 -0.74 12.41 16 35 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 37 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 38 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 39 H 0.08 4.96 6.46 -2.91 -0.02 4.94 16 Total: -1.00 -71.96 331.62 4.56 -67.39 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.32 Total: 33.64 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 5.56 Total: -21.48 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -2.89 Total: -88.69 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.45 Total: -33.23 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.96 4.56 -67.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879844758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.566 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds