Wall clock time and date at job start Tue Mar 31 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.46845 * 2 1 4 4 C 1.42896 * 114.00172 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47099 * 59.99962 * 4 3 2 6 6 C 1.53002 * 109.47112 * 300.00300 * 4 3 2 7 7 C 1.50699 * 109.47449 * 180.02562 * 4 3 2 8 8 O 1.21270 * 119.99958 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00012 * 179.97438 * 7 4 3 10 10 C 1.39269 * 119.99964 * 185.57631 * 9 7 4 11 11 C 1.39677 * 119.57439 * 18.84009 * 10 9 7 12 12 C 1.38648 * 119.49539 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67018 * 359.74722 * 12 11 10 14 14 C 1.40580 * 119.12988 * 0.49956 * 13 12 11 15 15 C 1.41334 * 119.78852 * 179.76636 * 14 13 12 16 16 H 1.08006 * 120.00068 * 8.66345 * 15 14 13 17 17 C 1.40023 * 120.00186 * 188.65792 * 15 14 13 18 18 N 1.30745 * 120.00258 * 195.97429 * 17 15 14 19 19 Si 1.86807 * 119.99714 * 15.97708 * 17 15 14 20 20 H 1.48493 * 109.47324 * 269.99737 * 19 17 15 21 21 H 1.48498 * 109.47024 * 30.00182 * 19 17 15 22 22 H 1.48506 * 109.46658 * 149.99722 * 19 17 15 23 23 N 1.31903 * 119.57571 * 198.86332 * 10 9 7 24 24 H 1.09000 * 109.46433 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46976 * 299.99446 * 1 2 3 26 26 H 1.08992 * 109.47521 * 59.99678 * 1 2 3 27 27 H 1.08998 * 109.46976 * 240.00554 * 2 1 3 28 28 H 1.09000 * 109.47311 * 120.00130 * 2 1 3 29 29 H 1.09009 * 109.47344 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47523 * 300.00082 * 5 4 3 31 31 H 1.08995 * 109.47452 * 60.00500 * 5 4 3 32 32 H 1.09002 * 109.46970 * 299.99865 * 6 4 3 33 33 H 1.08996 * 109.47532 * 59.99614 * 6 4 3 34 34 H 1.08998 * 109.47371 * 179.97438 * 6 4 3 35 35 H 0.96998 * 120.00306 * 5.58151 * 9 7 4 36 36 H 1.08001 * 120.25259 * 0.02562 * 11 10 9 37 37 H 1.08000 * 120.66569 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.43419 * 180.24614 * 13 12 11 39 39 H 0.96992 * 119.99715 * 354.93531 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9957 0.7817 -1.2501 6 6 3.9968 0.7813 1.2483 7 6 3.8194 2.9162 0.0001 8 8 2.9610 3.7729 0.0005 9 7 5.1209 3.2664 0.0002 10 6 5.4814 4.6065 0.1181 11 6 4.5597 5.5265 0.6228 12 6 4.9201 6.8603 0.7389 13 6 6.1934 7.2397 0.3530 14 6 7.0737 6.2671 -0.1523 15 6 8.3759 6.6403 -0.5554 16 1 8.7415 7.6350 -0.3470 17 6 9.1922 5.7204 -1.2247 18 7 10.4779 5.9370 -1.3221 19 14 8.4442 4.1836 -1.9788 20 1 8.4531 3.0866 -0.9781 21 1 7.0460 4.4654 -2.3922 22 1 9.2390 3.7775 -3.1657 23 7 6.6888 4.9905 -0.2489 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 5.0823 0.8683 -1.2508 30 1 3.7147 -0.2715 -1.2502 31 1 3.5926 1.2654 -2.1399 32 1 3.5943 1.2646 2.1385 33 1 3.7158 -0.2719 1.2483 34 1 5.0834 0.8670 1.2477 35 1 5.8064 2.5852 -0.0818 36 1 3.5736 5.2015 0.9204 37 1 4.2226 7.5876 1.1272 38 1 6.5055 8.2704 0.4350 39 1 10.8556 6.7686 -0.9958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882469959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:02 Heat of formation + Delta-G solvation = -56.742860 kcal Electronic energy + Delta-G solvation = -21955.966638 eV Core-core repulsion = 18670.461830 eV Total energy + Delta-G solvation = -3285.504808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.58353 -38.85024 -37.63326 -34.67675 -33.75616 -32.99714 -31.09032 -30.78302 -29.32377 -27.70659 -25.48728 -24.56649 -22.72359 -21.79381 -21.15722 -19.53378 -18.36249 -17.87086 -16.63380 -16.12632 -15.89203 -15.32983 -14.98836 -14.89629 -14.22900 -13.88833 -13.79070 -13.40564 -13.08569 -12.73841 -12.68118 -12.55590 -12.42461 -12.22995 -12.20113 -12.04124 -11.86549 -11.34738 -11.27402 -10.97890 -10.80716 -10.33786 -9.99289 -9.73809 -9.72882 -9.11630 -9.07484 -8.52052 -7.92676 -7.42327 -7.28535 -4.76503 2.19324 2.66736 2.80971 3.04219 3.44176 3.59067 3.78475 3.89203 4.31491 4.45742 4.57413 4.62970 4.70634 4.87752 5.01662 5.13313 5.20158 5.24457 5.45376 5.49319 5.53826 5.60035 5.70566 5.81454 5.87016 5.94189 5.96358 6.08120 6.45796 6.53153 6.56359 6.95710 7.14861 7.20757 7.43268 7.57974 7.61944 7.76929 8.11359 8.28781 8.43992 8.65063 9.42734 9.96622 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.005093 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.015044 B = 5496.064323 C = 6310.117823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.352 6.352 4 C 0.103 3.897 5 C -0.181 4.181 6 C -0.179 4.179 7 C 0.528 3.472 8 O -0.490 6.490 9 N -0.651 5.651 10 C 0.384 3.616 11 C -0.310 4.310 12 C -0.036 4.036 13 C -0.277 4.277 14 C 0.275 3.725 15 C -0.481 4.481 16 H 0.084 0.916 17 C 0.050 3.950 18 N -0.804 5.804 19 Si 1.141 2.859 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.326 1.326 23 N -0.595 5.595 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.406 0.594 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 -13.520 2.261 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.271 6.271 4 C 0.059 3.941 5 C -0.239 4.239 6 C -0.236 4.236 7 C 0.312 3.688 8 O -0.362 6.362 9 N -0.297 5.297 10 C 0.153 3.847 11 C -0.335 4.335 12 C -0.060 4.060 13 C -0.299 4.299 14 C 0.151 3.849 15 C -0.513 4.513 16 H 0.102 0.898 17 C -0.172 4.172 18 N -0.426 5.426 19 Si 0.974 3.026 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.258 1.258 23 N -0.320 5.320 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.424 -14.637 1.217 18.608 hybrid contribution -0.217 1.672 1.193 2.065 sum -11.640 -12.965 2.409 17.590 Atomic orbital electron populations 1.21723 0.93547 1.02024 1.03425 1.22588 0.95624 0.84149 1.00341 1.88092 1.17887 1.26088 1.95009 1.21243 0.83509 0.92716 0.96594 1.22469 1.02370 1.01523 0.97536 1.22437 1.02361 1.01388 0.97422 1.19890 0.82149 0.89889 0.76822 1.90645 1.49389 1.50553 1.45636 1.43159 1.07481 1.07612 1.71481 1.18040 0.90942 0.82786 0.92895 1.21526 1.02332 0.93454 1.16194 1.20918 0.95111 0.94953 0.95025 1.21619 0.95344 0.99357 1.13587 1.18177 0.92778 0.85174 0.88800 1.20657 0.97111 1.01289 1.32278 0.89798 1.27639 0.93154 1.04352 0.92099 1.70612 1.12123 1.25122 1.34728 0.82171 0.73746 0.72698 0.73955 1.21501 1.20667 1.25842 1.66168 1.17047 1.19707 1.29047 0.91153 0.91754 0.91742 0.92936 0.92959 0.90513 0.90727 0.90729 0.90822 0.90824 0.90509 0.75855 0.84474 0.87601 0.87675 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.47 5.86 37.16 0.22 0.69 16 3 O -0.35 -4.91 9.52 -55.14 -0.52 -5.44 16 4 C 0.10 1.35 0.98 -91.77 -0.09 1.26 16 5 C -0.18 -1.93 8.15 37.15 0.30 -1.63 16 6 C -0.18 -1.84 8.15 37.16 0.30 -1.54 16 7 C 0.53 9.42 6.40 -10.99 -0.07 9.35 16 8 O -0.49 -10.56 13.30 -14.34 -0.19 -10.75 16 9 N -0.65 -12.27 5.19 -11.40 -0.06 -12.33 16 10 C 0.38 8.95 7.51 -154.98 -1.16 7.78 16 11 C -0.31 -7.19 8.83 -38.89 -0.34 -7.54 16 12 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 13 C -0.28 -6.69 9.83 -38.66 -0.38 -7.07 16 14 C 0.27 7.26 6.27 -85.00 -0.53 6.73 16 15 C -0.48 -13.10 9.51 -37.74 -0.36 -13.46 16 16 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 17 C 0.05 1.33 5.51 -17.35 -0.10 1.24 16 18 N -0.80 -21.69 13.65 55.55 0.76 -20.93 16 19 Si 1.14 27.35 25.93 -169.99 -4.41 22.94 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.89 6.55 56.52 0.37 -6.52 16 22 H -0.33 -7.66 7.11 56.52 0.40 -7.25 16 23 N -0.59 -15.13 5.07 -10.25 -0.05 -15.18 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.43 6.41 -51.93 -0.33 0.10 16 28 H 0.05 0.42 6.42 -51.93 -0.33 0.09 16 29 H 0.08 0.75 7.45 -51.92 -0.39 0.36 16 30 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 34 H 0.08 0.73 7.70 -51.93 -0.40 0.33 16 35 H 0.41 6.59 7.69 -40.82 -0.31 6.27 16 36 H 0.14 3.15 5.33 -52.50 -0.28 2.87 16 37 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -31.80 318.55 -7.20 -38.99 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.29 Total: 4.15 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.23 Total: -6.26 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.65 Total: -48.44 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.72 Total: -16.19 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -4.41 Total: 22.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.80 -7.20 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882469959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.749 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds