Wall clock time and date at job start Tue Mar 31 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.46845 * 2 1 4 4 C 1.42896 * 114.00172 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47099 * 59.99962 * 4 3 2 6 6 C 1.53002 * 109.47112 * 300.00300 * 4 3 2 7 7 C 1.50699 * 109.47449 * 180.02562 * 4 3 2 8 8 O 1.21270 * 119.99958 * 359.97438 * 7 4 3 9 9 N 1.34776 * 120.00012 * 179.97438 * 7 4 3 10 10 C 1.39269 * 119.99964 * 185.57631 * 9 7 4 11 11 C 1.39677 * 119.57439 * 18.84009 * 10 9 7 12 12 C 1.38648 * 119.49539 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67018 * 359.74722 * 12 11 10 14 14 C 1.40580 * 119.12988 * 0.49956 * 13 12 11 15 15 C 1.41334 * 119.78852 * 179.76636 * 14 13 12 16 16 H 1.08006 * 120.00068 * 8.66345 * 15 14 13 17 17 C 1.40023 * 120.00186 * 188.65792 * 15 14 13 18 18 N 1.30745 * 120.00258 * 195.97429 * 17 15 14 19 19 Si 1.86807 * 119.99714 * 15.97708 * 17 15 14 20 20 H 1.48493 * 109.47324 * 269.99737 * 19 17 15 21 21 H 1.48498 * 109.47024 * 30.00182 * 19 17 15 22 22 H 1.48506 * 109.46658 * 149.99722 * 19 17 15 23 23 N 1.31903 * 119.57571 * 198.86332 * 10 9 7 24 24 H 1.09000 * 109.46433 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46976 * 299.99446 * 1 2 3 26 26 H 1.08992 * 109.47521 * 59.99678 * 1 2 3 27 27 H 1.08998 * 109.46976 * 240.00554 * 2 1 3 28 28 H 1.09000 * 109.47311 * 120.00130 * 2 1 3 29 29 H 1.09009 * 109.47344 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47523 * 300.00082 * 5 4 3 31 31 H 1.08995 * 109.47452 * 60.00500 * 5 4 3 32 32 H 1.09002 * 109.46970 * 299.99865 * 6 4 3 33 33 H 1.08996 * 109.47532 * 59.99614 * 6 4 3 34 34 H 1.08998 * 109.47371 * 179.97438 * 6 4 3 35 35 H 0.96998 * 120.00306 * 5.58151 * 9 7 4 36 36 H 1.08001 * 120.25259 * 0.02562 * 11 10 9 37 37 H 1.08000 * 120.66569 * 180.02562 * 12 11 10 38 38 H 1.07999 * 120.43419 * 180.24614 * 13 12 11 39 39 H 0.96992 * 119.99715 * 354.93531 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9957 0.7817 -1.2501 6 6 3.9968 0.7813 1.2483 7 6 3.8194 2.9162 0.0001 8 8 2.9610 3.7729 0.0005 9 7 5.1209 3.2664 0.0002 10 6 5.4814 4.6065 0.1181 11 6 4.5597 5.5265 0.6228 12 6 4.9201 6.8603 0.7389 13 6 6.1934 7.2397 0.3530 14 6 7.0737 6.2671 -0.1523 15 6 8.3759 6.6403 -0.5554 16 1 8.7415 7.6350 -0.3470 17 6 9.1922 5.7204 -1.2247 18 7 10.4779 5.9370 -1.3221 19 14 8.4442 4.1836 -1.9788 20 1 8.4531 3.0866 -0.9781 21 1 7.0460 4.4654 -2.3922 22 1 9.2390 3.7775 -3.1657 23 7 6.6888 4.9905 -0.2489 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8935 -0.5138 0.8900 29 1 5.0823 0.8683 -1.2508 30 1 3.7147 -0.2715 -1.2502 31 1 3.5926 1.2654 -2.1399 32 1 3.5943 1.2646 2.1385 33 1 3.7158 -0.2719 1.2483 34 1 5.0834 0.8670 1.2477 35 1 5.8064 2.5852 -0.0818 36 1 3.5736 5.2015 0.9204 37 1 4.2226 7.5876 1.1272 38 1 6.5055 8.2704 0.4350 39 1 10.8556 6.7686 -0.9958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882469959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:02 Heat of formation + Delta-G solvation = -76.364355 kcal Electronic energy + Delta-G solvation = -21956.817490 eV Core-core repulsion = 18670.461830 eV Total energy + Delta-G solvation = -3286.355660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.00083 -40.34852 -39.01376 -36.34140 -35.52356 -34.11517 -32.97644 -31.67515 -31.01883 -28.49746 -27.37421 -25.76701 -23.95962 -23.59113 -22.45884 -21.03601 -20.19928 -19.32755 -17.95787 -17.44607 -16.96323 -16.83656 -16.57245 -16.25695 -15.88236 -15.54543 -14.99327 -14.66176 -14.59551 -14.26425 -14.14860 -13.76024 -13.59628 -13.39037 -13.29302 -12.95404 -12.87420 -12.83877 -12.70468 -12.19415 -12.10963 -11.91677 -11.86550 -11.57796 -11.05311 -10.61668 -10.55470 -10.40350 -9.86539 -9.33551 -9.24728 -6.80913 0.46114 0.74422 1.44101 1.49015 1.56377 1.71238 1.98332 2.40279 2.61849 2.79868 3.33335 3.55553 3.64475 3.82506 4.06045 4.20173 4.33529 4.37423 4.43207 4.52432 4.54676 4.62959 4.68044 4.69456 4.74728 4.75094 4.91220 5.02947 5.08365 5.19443 5.29698 5.33686 5.37474 5.40983 5.70656 5.78302 5.92242 6.11873 6.31540 6.39522 6.64364 6.97238 7.49786 7.92555 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.005093 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.015044 B = 5496.064323 C = 6310.117823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.386 6.386 4 C 0.109 3.891 5 C -0.181 4.181 6 C -0.176 4.176 7 C 0.524 3.476 8 O -0.532 6.532 9 N -0.644 5.644 10 C 0.375 3.625 11 C -0.313 4.313 12 C -0.030 4.030 13 C -0.292 4.292 14 C 0.259 3.741 15 C -0.511 4.511 16 H 0.070 0.930 17 C 0.022 3.978 18 N -0.823 5.823 19 Si 1.171 2.829 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.319 1.319 23 N -0.604 5.604 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.419 0.581 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.999 -16.257 2.615 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.034 4.034 3 O -0.306 6.306 4 C 0.066 3.934 5 C -0.238 4.238 6 C -0.233 4.233 7 C 0.312 3.688 8 O -0.407 6.407 9 N -0.292 5.292 10 C 0.143 3.857 11 C -0.337 4.337 12 C -0.054 4.054 13 C -0.314 4.314 14 C 0.134 3.866 15 C -0.543 4.543 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.446 5.446 19 Si 1.000 3.000 20 H -0.193 1.193 21 H -0.221 1.221 22 H -0.251 1.251 23 N -0.330 5.330 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.257 0.743 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.725 -17.412 1.584 21.624 hybrid contribution -0.035 2.529 1.143 2.776 sum -12.760 -14.883 2.727 19.792 Atomic orbital electron populations 1.21774 0.93157 1.03508 1.02315 1.22897 0.96035 0.82403 1.02093 1.88056 1.18175 1.28994 1.95375 1.21245 0.83884 0.89061 0.99185 1.22520 1.02782 1.03076 0.95419 1.22467 1.02753 1.02837 0.95224 1.20983 0.81005 0.92049 0.74800 1.90604 1.50282 1.52403 1.47408 1.43197 1.08587 1.06179 1.71231 1.18382 0.90305 0.84853 0.92117 1.21831 1.02472 0.94010 1.15369 1.21303 0.94941 0.95493 0.93635 1.21788 0.95894 0.99660 1.14076 1.18379 0.92962 0.86257 0.89048 1.20663 0.98224 1.01140 1.34294 0.91220 1.28437 0.93183 1.05937 0.91996 1.70634 1.12384 1.25408 1.36161 0.81803 0.72415 0.71636 0.74131 1.19334 1.22110 1.25082 1.66183 1.18028 1.19405 1.29354 0.88347 0.92810 0.92937 0.91151 0.91011 0.89542 0.87327 0.92208 0.92010 0.87525 0.89543 0.74286 0.84055 0.84052 0.86624 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.04 0.65 5.86 71.98 0.42 1.07 16 3 O -0.39 -9.99 9.52 -129.94 -1.24 -11.23 16 4 C 0.11 2.59 0.98 -11.54 -0.01 2.58 16 5 C -0.18 -3.25 8.15 71.98 0.59 -2.66 16 6 C -0.18 -3.01 8.15 71.98 0.59 -2.43 16 7 C 0.52 18.01 6.40 87.66 0.56 18.57 16 8 O -0.53 -22.70 13.30 16.04 0.21 -22.48 16 9 N -0.64 -23.31 5.19 -308.37 -1.60 -24.91 16 10 C 0.38 17.12 7.51 133.25 1.00 18.12 16 11 C -0.31 -14.16 8.83 22.72 0.20 -13.96 16 12 C -0.03 -1.29 10.15 22.39 0.23 -1.06 16 13 C -0.29 -14.02 9.83 22.87 0.22 -13.80 16 14 C 0.26 13.74 6.27 40.19 0.25 13.99 16 15 C -0.51 -28.44 9.51 23.46 0.22 -28.22 16 16 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 17 C 0.02 1.21 5.51 85.29 0.47 1.68 16 18 N -0.82 -45.06 13.65 21.84 0.30 -44.76 16 19 Si 1.17 54.85 25.93 68.60 1.78 56.63 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -14.27 6.55 99.48 0.65 -13.62 16 22 H -0.32 -14.43 7.11 99.48 0.71 -13.72 16 23 N -0.60 -30.42 5.07 -186.35 -0.95 -31.36 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.85 6.41 -2.39 -0.02 0.84 16 28 H 0.07 0.85 6.42 -2.39 -0.02 0.83 16 29 H 0.09 1.38 7.45 -2.38 -0.02 1.37 16 30 H 0.11 1.21 6.54 -2.39 -0.02 1.20 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.14 6.54 -2.39 -0.02 1.12 16 34 H 0.09 1.32 7.70 -2.39 -0.02 1.30 16 35 H 0.42 12.68 7.69 -92.71 -0.71 11.97 16 36 H 0.14 6.37 5.33 -3.17 -0.02 6.35 16 37 H 0.14 5.05 8.06 -2.91 -0.02 5.03 16 38 H 0.12 5.19 8.06 -2.91 -0.02 5.16 16 39 H 0.28 15.00 8.72 -92.71 -0.81 14.20 16 Total: -1.00 -69.74 318.55 4.25 -65.48 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.26 Total: 20.17 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.48 Total: -7.55 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -2.25 Total: -101.03 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.02 Total: -33.71 kcal Atomic # 14 Polarization: 54.85 SS G_CDS: 1.78 Total: 56.63 kcal Total: -69.74 4.25 -65.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882469959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.880 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds