Wall clock time and date at job start Mon Mar 30 2020 23:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47266 * 2 1 4 4 N 1.39925 * 125.75133 * 270.16655 * 3 2 1 5 5 C 1.30425 * 108.92181 * 180.25388 * 4 3 2 6 6 C 1.41335 * 108.01591 * 359.76815 * 5 4 3 7 7 C 1.47289 * 126.43340 * 179.97438 * 6 5 4 8 8 O 1.21520 * 120.00538 * 174.59346 * 7 6 5 9 9 O 1.34754 * 119.99298 * 354.59675 * 7 6 5 10 10 C 1.45202 * 116.99645 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47153 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99720 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47389 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47046 * 120.00283 * 16 14 12 19 19 H 1.48508 * 109.46884 * 239.99586 * 16 14 12 20 20 C 1.34227 * 125.73957 * 90.00594 * 3 2 1 21 21 C 1.50700 * 126.29550 * 0.02562 * 20 3 2 22 22 C 1.53005 * 117.49728 * 48.40597 * 21 20 3 23 23 C 1.53006 * 117.49841 * 117.06200 * 21 20 3 24 24 H 1.09003 * 109.46925 * 299.99949 * 1 2 3 25 25 H 1.09001 * 109.47485 * 59.98852 * 1 2 3 26 26 H 1.08992 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46417 * 240.00165 * 2 1 3 28 28 H 1.08995 * 109.47054 * 120.01177 * 2 1 3 29 29 H 1.08002 * 125.99238 * 179.73645 * 5 4 3 30 30 H 1.09003 * 109.47104 * 299.99814 * 10 9 7 31 31 H 1.08999 * 109.47181 * 59.99950 * 10 9 7 32 32 H 1.09003 * 109.46853 * 299.99789 * 11 10 9 33 33 H 1.08999 * 109.47300 * 59.99844 * 11 10 9 34 34 H 0.96994 * 120.00032 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.55427 * 262.73458 * 21 20 3 36 36 H 1.09000 * 117.49570 * 215.00044 * 22 21 20 37 37 H 1.09000 * 117.50200 * 0.02562 * 22 21 20 38 38 H 1.08997 * 117.50048 * 359.97438 * 23 21 20 39 39 H 1.09006 * 117.49349 * 144.96974 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2878 2.1530 -1.1356 5 6 2.7101 3.3278 -0.7580 6 6 2.7222 3.3546 0.6551 7 6 3.1304 4.4861 1.5050 8 8 3.0023 4.4171 2.7115 9 8 3.6459 5.5979 0.9447 10 6 4.0258 6.6735 1.8432 11 6 4.5856 7.8429 1.0308 12 6 4.9806 8.9589 1.9634 13 1 4.8453 8.8456 3.0288 14 6 5.5145 10.1245 1.4563 15 7 5.6787 10.2627 0.1588 16 14 6.0033 11.5082 2.6122 17 1 5.7178 11.1070 4.0131 18 1 7.4539 11.7886 2.4629 19 1 5.2263 12.7291 2.2792 20 6 2.2798 2.1203 1.0895 21 6 2.1255 1.6818 2.5230 22 6 2.7248 0.3302 2.9167 23 6 3.3885 1.6276 3.3850 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8898 29 1 3.0003 4.1379 -1.4107 30 1 3.1512 7.0058 2.4024 31 1 4.7863 6.3156 2.5371 32 1 5.4602 7.5108 0.4713 33 1 3.8248 8.2006 0.3371 34 1 6.0540 11.0829 -0.1980 35 1 1.1970 1.9814 3.0090 36 1 2.1904 -0.2594 3.6617 37 1 3.2310 -0.2417 2.1391 38 1 4.3310 1.9086 2.9152 39 1 3.2908 1.8921 4.4380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885132660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:11 Heat of formation + Delta-G solvation = 3.934466 kcal Electronic energy + Delta-G solvation = -21166.542434 eV Core-core repulsion = 17883.668793 eV Total energy + Delta-G solvation = -3282.873641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65661 -39.30006 -37.28078 -35.77683 -34.69929 -33.26677 -30.55745 -30.37585 -29.62577 -25.53059 -24.41494 -23.43952 -22.73250 -22.23479 -20.97636 -20.34934 -19.31705 -17.62215 -16.59735 -16.23114 -15.80509 -15.65558 -15.54702 -14.87320 -14.74734 -14.62726 -14.40890 -13.56671 -13.19572 -12.79033 -12.69396 -12.44620 -12.33487 -12.16350 -11.90379 -11.58657 -11.34653 -11.15707 -10.95445 -10.78077 -10.65993 -10.61503 -10.40825 -10.00880 -9.54319 -9.53176 -9.51521 -9.22469 -8.70917 -8.39868 -6.06040 -4.09854 1.36810 2.11112 2.16693 3.30403 3.34633 3.38784 3.43637 3.49393 3.54560 4.09498 4.24657 4.43943 4.56212 4.59182 4.70251 4.76784 4.89132 4.99260 5.18239 5.26428 5.30159 5.30610 5.31222 5.51745 5.67854 5.68543 5.81765 5.88502 5.95058 6.20068 6.22247 6.41961 6.67368 6.73496 7.14720 7.48213 7.63805 7.69975 7.93293 8.27933 8.47209 8.96177 9.54270 11.05598 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003357 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.772842 B = 8339.936251 C = 8985.606895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.355 5.355 4 N -0.302 5.302 5 C 0.105 3.895 6 C -0.268 4.268 7 C 0.534 3.466 8 O -0.520 6.520 9 O -0.355 6.355 10 C 0.079 3.921 11 C 0.024 3.976 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.185 3.815 21 C -0.099 4.099 22 C -0.187 4.187 23 C -0.127 4.127 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.200 0.800 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 -23.319 1.473 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.134 5.134 4 N -0.120 5.120 5 C -0.083 4.083 6 C -0.281 4.281 7 C 0.379 3.621 8 O -0.411 6.411 9 O -0.271 6.271 10 C 0.006 3.994 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.053 3.947 21 C -0.119 4.119 22 C -0.224 4.224 23 C -0.165 4.165 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.217 0.783 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.146 -24.073 0.650 25.761 hybrid contribution 0.426 1.484 1.204 1.958 sum -8.720 -22.589 1.854 24.285 Atomic orbital electron populations 1.22173 0.93900 1.03202 1.03506 1.21917 0.95698 0.77549 1.04945 1.48528 1.49578 1.12159 1.03131 1.77233 1.23181 1.04628 1.07007 1.24266 0.94876 0.95207 0.93917 1.19216 1.20629 0.94759 0.93480 1.19882 0.74365 0.81968 0.85913 1.90774 1.53011 1.81898 1.15387 1.86562 1.72579 1.25018 1.42920 1.23575 0.98799 0.84621 0.92366 1.19172 0.96853 0.89467 0.95841 1.21031 1.42255 0.99565 0.93355 0.92229 1.24982 0.95526 0.98510 0.95194 1.69985 1.44583 1.26968 1.11350 0.86433 0.78186 0.81797 0.81002 1.19599 1.20877 1.20879 1.20462 0.94645 0.90390 0.89222 1.20459 1.01050 1.01424 0.88956 1.23224 1.04545 0.90703 1.03879 1.22858 0.95633 0.97769 1.00243 0.91780 0.91458 0.90313 0.88416 0.88171 0.78290 0.92454 0.92451 0.95370 0.95358 0.92819 0.85153 0.87726 0.88789 0.88523 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.12 0.88 6.92 -4.04 -0.03 0.86 16 3 N -0.36 -4.18 3.58 -56.59 -0.20 -4.38 16 4 N -0.30 -4.21 12.50 30.87 0.39 -3.82 16 5 C 0.10 1.53 11.87 -16.97 -0.20 1.33 16 6 C -0.27 -4.26 6.12 -105.08 -0.64 -4.91 16 7 C 0.53 10.09 7.95 34.41 0.27 10.37 16 8 O -0.52 -10.34 14.48 -19.28 -0.28 -10.62 16 9 O -0.35 -7.42 10.07 -40.64 -0.41 -7.83 16 10 C 0.08 1.80 5.41 37.16 0.20 2.00 16 11 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 12 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.19 2.43 6.45 -81.59 -0.53 1.91 16 21 C -0.10 -1.07 5.01 -91.77 -0.46 -1.53 16 22 C -0.19 -1.43 8.80 -26.69 -0.23 -1.66 16 23 C -0.13 -1.37 8.96 -26.69 -0.24 -1.61 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.55 5.10 -51.93 -0.26 0.29 16 29 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.66 6.89 -51.93 -0.36 0.31 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -32.95 336.23 -7.42 -40.37 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.66 Total: -2.40 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.04 Total: -7.05 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.92 Total: -34.11 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.69 Total: -18.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.95 -7.42 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885132660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.306 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds