Wall clock time and date at job start Mon Mar 30 2020 23:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47266 * 2 1 4 4 N 1.39925 * 125.75133 * 270.16655 * 3 2 1 5 5 C 1.30425 * 108.92181 * 180.25388 * 4 3 2 6 6 C 1.41335 * 108.01591 * 359.76815 * 5 4 3 7 7 C 1.47289 * 126.43340 * 179.97438 * 6 5 4 8 8 O 1.21520 * 120.00538 * 174.59346 * 7 6 5 9 9 O 1.34754 * 119.99298 * 354.59675 * 7 6 5 10 10 C 1.45202 * 116.99645 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47153 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99720 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00105 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47389 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47046 * 120.00283 * 16 14 12 19 19 H 1.48508 * 109.46884 * 239.99586 * 16 14 12 20 20 C 1.34227 * 125.73957 * 90.00594 * 3 2 1 21 21 C 1.50700 * 126.29550 * 0.02562 * 20 3 2 22 22 C 1.53005 * 117.49728 * 48.40597 * 21 20 3 23 23 C 1.53006 * 117.49841 * 117.06200 * 21 20 3 24 24 H 1.09003 * 109.46925 * 299.99949 * 1 2 3 25 25 H 1.09001 * 109.47485 * 59.98852 * 1 2 3 26 26 H 1.08992 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46417 * 240.00165 * 2 1 3 28 28 H 1.08995 * 109.47054 * 120.01177 * 2 1 3 29 29 H 1.08002 * 125.99238 * 179.73645 * 5 4 3 30 30 H 1.09003 * 109.47104 * 299.99814 * 10 9 7 31 31 H 1.08999 * 109.47181 * 59.99950 * 10 9 7 32 32 H 1.09003 * 109.46853 * 299.99789 * 11 10 9 33 33 H 1.08999 * 109.47300 * 59.99844 * 11 10 9 34 34 H 0.96994 * 120.00032 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.55427 * 262.73458 * 21 20 3 36 36 H 1.09000 * 117.49570 * 215.00044 * 22 21 20 37 37 H 1.09000 * 117.50200 * 0.02562 * 22 21 20 38 38 H 1.08997 * 117.50048 * 359.97438 * 23 21 20 39 39 H 1.09006 * 117.49349 * 144.96974 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2878 2.1530 -1.1356 5 6 2.7101 3.3278 -0.7580 6 6 2.7222 3.3546 0.6551 7 6 3.1304 4.4861 1.5050 8 8 3.0023 4.4171 2.7115 9 8 3.6459 5.5979 0.9447 10 6 4.0258 6.6735 1.8432 11 6 4.5856 7.8429 1.0308 12 6 4.9806 8.9589 1.9634 13 1 4.8453 8.8456 3.0288 14 6 5.5145 10.1245 1.4563 15 7 5.6787 10.2627 0.1588 16 14 6.0033 11.5082 2.6122 17 1 5.7178 11.1070 4.0131 18 1 7.4539 11.7886 2.4629 19 1 5.2263 12.7291 2.2792 20 6 2.2798 2.1203 1.0895 21 6 2.1255 1.6818 2.5230 22 6 2.7248 0.3302 2.9167 23 6 3.3885 1.6276 3.3850 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8898 29 1 3.0003 4.1379 -1.4107 30 1 3.1512 7.0058 2.4024 31 1 4.7863 6.3156 2.5371 32 1 5.4602 7.5108 0.4713 33 1 3.8248 8.2006 0.3371 34 1 6.0540 11.0829 -0.1980 35 1 1.1970 1.9814 3.0090 36 1 2.1904 -0.2594 3.6617 37 1 3.2310 -0.2417 2.1391 38 1 4.3310 1.9086 2.9152 39 1 3.2908 1.8921 4.4380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885132660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:11 Heat of formation + Delta-G solvation = -14.945893 kcal Electronic energy + Delta-G solvation = -21167.361148 eV Core-core repulsion = 17883.668793 eV Total energy + Delta-G solvation = -3283.692355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.71634 -40.86109 -38.12900 -37.37856 -35.51116 -35.37853 -32.38929 -31.44731 -30.76524 -27.26154 -25.68782 -24.34811 -23.65081 -23.27248 -22.77669 -21.62374 -20.37164 -19.03080 -18.30511 -17.62366 -17.39843 -16.96084 -16.71851 -16.41075 -15.75530 -15.62298 -15.35182 -14.88087 -14.47402 -14.44318 -14.31218 -13.52097 -13.20212 -13.09266 -13.00548 -12.95854 -12.60561 -12.57004 -12.54279 -12.40429 -12.13280 -11.74533 -11.52745 -11.45491 -11.38968 -11.28853 -11.17617 -10.60231 -10.49089 -9.84214 -8.25425 -6.38498 0.24552 0.95473 1.19632 1.42096 1.42780 1.56575 1.92912 2.14474 2.42290 2.69197 3.08910 3.25086 3.43198 3.80525 3.86827 3.91653 4.03243 4.09515 4.17820 4.27796 4.29370 4.32621 4.39932 4.62582 4.68382 4.75597 4.78708 4.83285 4.95914 5.05004 5.17934 5.19153 5.26453 5.34224 5.49683 5.60599 5.77130 5.78929 6.08803 6.40023 6.74881 6.91150 7.31186 8.87593 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003357 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.772842 B = 8339.936251 C = 8985.606895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.344 5.344 4 N -0.313 5.313 5 C 0.098 3.902 6 C -0.305 4.305 7 C 0.533 3.467 8 O -0.534 6.534 9 O -0.365 6.365 10 C 0.096 3.904 11 C 0.031 3.969 12 C -0.548 4.548 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.975 3.025 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.275 1.275 20 C 0.201 3.799 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.150 4.150 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.205 0.795 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.006 0.994 34 H 0.267 0.733 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -25.369 2.762 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.122 5.122 4 N -0.131 5.131 5 C -0.089 4.089 6 C -0.318 4.318 7 C 0.379 3.621 8 O -0.426 6.426 9 O -0.281 6.281 10 C 0.022 3.978 11 C -0.006 4.006 12 C -0.586 4.586 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.798 3.202 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.066 3.934 21 C -0.137 4.137 22 C -0.180 4.180 23 C -0.188 4.188 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.221 0.779 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.860 -26.168 1.923 28.030 hybrid contribution 0.591 1.965 0.752 2.186 sum -9.269 -24.203 2.675 26.055 Atomic orbital electron populations 1.22160 0.92819 1.04914 1.02377 1.22435 0.96571 0.75232 1.06893 1.48954 1.47948 1.13192 1.02079 1.77185 1.23298 1.04499 1.08167 1.24375 0.95071 0.95812 0.93645 1.19194 1.23711 0.95110 0.93793 1.20338 0.73731 0.81763 0.86270 1.90748 1.53818 1.82012 1.15973 1.86545 1.73330 1.25533 1.42731 1.23106 0.98657 0.84343 0.91658 1.18982 0.95333 0.90797 0.95520 1.21407 1.42769 1.00490 0.93886 0.91643 1.25981 0.95145 1.01316 0.96962 1.70109 1.45158 1.28032 1.13398 0.85259 0.78014 0.78023 0.78895 1.18524 1.20051 1.20082 1.20765 0.92560 0.89435 0.90674 1.20592 1.01246 1.04569 0.87343 1.23370 1.01878 0.89124 1.03666 1.22839 0.94654 1.01098 1.00161 0.92236 0.93243 0.87158 0.87134 0.85573 0.77879 0.92328 0.92271 0.97619 0.97595 0.92370 0.84528 0.84500 0.87627 0.90886 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.24 71.98 0.74 -0.88 16 2 C 0.11 1.25 6.92 86.38 0.60 1.85 16 3 N -0.34 -7.54 3.58 -332.97 -1.19 -8.74 16 4 N -0.31 -8.57 12.50 -56.25 -0.70 -9.27 16 5 C 0.10 2.93 11.87 85.66 1.02 3.95 16 6 C -0.31 -9.88 6.12 -20.16 -0.12 -10.01 16 7 C 0.53 20.78 7.95 70.20 0.56 21.34 16 8 O -0.53 -21.70 14.48 19.77 0.29 -21.41 16 9 O -0.36 -15.94 10.07 -56.65 -0.57 -16.51 16 10 C 0.10 4.51 5.41 71.98 0.39 4.90 16 11 C 0.03 1.71 5.35 29.85 0.16 1.87 16 12 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 13 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 14 C 0.00 0.27 5.46 84.65 0.46 0.73 16 15 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 16 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 C 0.20 5.09 6.45 42.17 0.27 5.36 16 21 C -0.12 -2.32 5.01 -11.54 -0.06 -2.38 16 22 C -0.14 -1.68 8.80 30.62 0.27 -1.41 16 23 C -0.15 -3.04 8.96 30.62 0.27 -2.77 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 0.83 5.10 -2.39 -0.01 0.82 16 29 H 0.20 5.59 8.06 -2.91 -0.02 5.57 16 30 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 1.03 6.89 -2.39 -0.02 1.01 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -72.82 336.23 5.96 -66.86 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.04 Total: 7.93 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.79 Total: -8.94 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.61 Total: -74.24 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.28 Total: -37.92 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.82 5.96 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885132660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.914 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds