Wall clock time and date at job start Mon Mar 30 2020 23:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46867 * 2 1 4 4 N 1.39932 * 125.74321 * 90.03223 * 3 2 1 5 5 C 1.30425 * 108.91592 * 179.97438 * 4 3 2 6 6 C 1.41340 * 108.01830 * 359.97438 * 5 4 3 7 7 C 1.47284 * 126.43167 * 179.97438 * 6 5 4 8 8 O 1.21521 * 120.00545 * 174.90549 * 7 6 5 9 9 O 1.34763 * 119.99746 * 355.17471 * 7 6 5 10 10 C 1.45199 * 116.99742 * 179.72882 * 9 7 6 11 11 H 1.09000 * 109.47542 * 29.99791 * 10 9 7 12 12 C 1.52997 * 109.46764 * 269.99573 * 10 9 7 13 13 C 1.50702 * 109.46960 * 150.00439 * 10 9 7 14 14 H 1.07998 * 119.99841 * 5.38068 * 13 10 9 15 15 C 1.37879 * 119.99950 * 185.39155 * 13 10 9 16 16 N 1.31516 * 119.99970 * 355.35153 * 15 13 10 17 17 Si 1.86799 * 119.99931 * 175.35443 * 15 13 10 18 18 H 1.48496 * 109.47149 * 94.99700 * 17 15 13 19 19 H 1.48505 * 109.47060 * 214.99450 * 17 15 13 20 20 H 1.48496 * 109.47324 * 334.99535 * 17 15 13 21 21 C 1.34223 * 125.74294 * 270.31222 * 3 2 1 22 22 C 1.50707 * 126.29872 * 0.02562 * 21 3 2 23 23 C 1.53001 * 117.49480 * 311.93663 * 22 21 3 24 24 C 1.52995 * 117.49654 * 243.27752 * 22 21 3 25 25 H 1.09007 * 109.46919 * 299.99947 * 1 2 3 26 26 H 1.09001 * 109.47548 * 59.99750 * 1 2 3 27 27 H 1.09003 * 109.47420 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46447 * 240.00136 * 2 1 3 29 29 H 1.08997 * 109.47075 * 120.00162 * 2 1 3 30 30 H 1.08008 * 125.99064 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.47321 * 64.91150 * 12 10 9 32 32 H 1.09007 * 109.47377 * 184.90281 * 12 10 9 33 33 H 1.08995 * 109.47628 * 304.90804 * 12 10 9 34 34 H 0.96995 * 119.99958 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.54574 * 97.60425 * 22 21 3 36 36 H 1.08996 * 117.50110 * 359.97438 * 23 22 21 37 37 H 1.09005 * 117.49399 * 145.01747 * 23 22 21 38 38 H 1.09001 * 117.49526 * 214.97248 * 24 22 21 39 39 H 1.08996 * 117.50239 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1517 1.1358 5 6 2.7077 3.3286 0.7582 6 6 2.7177 3.3563 -0.6549 7 6 3.1185 4.4905 -1.5048 8 8 3.1706 4.3570 -2.7115 9 8 3.4326 5.6748 -0.9437 10 6 3.8245 6.7463 -1.8418 11 1 3.3216 6.6192 -2.8004 12 6 5.3396 6.7073 -2.0516 13 6 3.4346 8.0725 -1.2417 14 1 3.0211 8.1135 -0.2448 15 6 3.6056 9.2336 -1.9654 16 7 4.1925 9.1949 -3.1417 17 14 3.0036 10.8616 -1.2750 18 1 4.1221 11.5489 -0.5810 19 1 2.5090 11.7168 -2.3838 20 1 1.9011 10.6135 -0.3117 21 6 2.2740 2.1224 -1.0894 22 6 2.1112 1.6871 -2.5230 23 6 2.7003 0.3323 -2.9211 24 6 3.3703 1.6263 -3.3900 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.9946 4.1399 1.4109 31 1 5.6117 5.7849 -2.5648 32 1 5.6450 7.5623 -2.6548 33 1 5.8415 6.7468 -1.0849 34 1 4.3124 10.0116 -3.6509 35 1 1.1826 1.9934 -3.0047 36 1 3.2059 -0.2439 -2.1462 37 1 2.1594 -0.2526 -3.6650 38 1 3.2700 1.8920 -4.4424 39 1 4.3163 1.9015 -2.9238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:31 Heat of formation + Delta-G solvation = 9.469527 kcal Electronic energy + Delta-G solvation = -21796.741517 eV Core-core repulsion = 18514.107894 eV Total energy + Delta-G solvation = -3282.633623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44886 -38.87667 -37.09273 -35.40941 -34.52422 -33.11259 -30.28068 -30.04331 -29.14460 -25.26138 -24.82096 -23.31697 -22.58400 -22.25794 -21.04542 -19.81240 -18.96222 -17.35380 -16.47498 -16.16995 -15.81588 -15.24551 -14.78258 -14.65896 -14.56397 -14.44112 -14.19917 -13.39812 -12.92516 -12.67500 -12.37156 -12.22715 -11.92122 -11.82756 -11.67975 -11.40878 -11.15105 -11.10045 -11.00113 -10.76804 -10.56533 -10.32504 -10.23111 -10.21583 -9.46284 -9.35755 -9.32121 -8.84135 -8.50170 -8.38778 -6.12656 -4.18187 1.59557 2.29354 2.39497 3.28603 3.34551 3.39476 3.62752 3.86369 3.92238 4.27757 4.36196 4.48047 4.70186 4.76181 4.88918 4.89352 5.06547 5.16277 5.20973 5.30393 5.43570 5.44838 5.56379 5.70938 5.79097 5.86092 6.02523 6.15785 6.22550 6.60350 6.74168 6.86103 6.98012 7.02748 7.28133 7.66079 7.68354 7.80909 8.02655 8.24111 8.78478 9.04549 9.47406 10.95289 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.004325 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.028819 B = 6472.242878 C = 7044.446317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.358 5.358 4 N -0.306 5.306 5 C 0.102 3.898 6 C -0.262 4.262 7 C 0.530 3.470 8 O -0.522 6.522 9 O -0.354 6.354 10 C 0.217 3.783 11 H 0.049 0.951 12 C -0.152 4.152 13 C -0.518 4.518 14 H 0.068 0.932 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.180 3.820 22 C -0.099 4.099 23 C -0.190 4.190 24 C -0.120 4.120 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.198 0.802 31 H 0.017 0.983 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 -19.109 3.015 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.137 5.137 4 N -0.125 5.125 5 C -0.085 4.085 6 C -0.274 4.274 7 C 0.374 3.626 8 O -0.413 6.413 9 O -0.270 6.270 10 C 0.165 3.835 11 H 0.066 0.934 12 C -0.210 4.210 13 C -0.556 4.556 14 H 0.087 0.913 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.736 3.264 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.048 3.952 22 C -0.119 4.119 23 C -0.227 4.227 24 C -0.158 4.158 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.215 0.785 31 H 0.036 0.964 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.849 -19.873 3.545 20.761 hybrid contribution -0.109 1.543 -0.402 1.598 sum -4.958 -18.330 3.142 19.247 Atomic orbital electron populations 1.22173 0.94045 1.03048 1.03498 1.21879 0.95598 0.77768 1.04771 1.48470 1.49998 1.12071 1.03168 1.77183 1.23449 1.04763 1.07115 1.24220 0.95104 0.95036 0.94101 1.19386 1.19859 0.94700 0.93488 1.19828 0.74027 0.82904 0.85867 1.90746 1.51174 1.83942 1.15438 1.86531 1.76563 1.20042 1.43897 1.20578 0.92251 0.81161 0.89537 0.93367 1.22141 0.97869 1.00801 1.00183 1.21042 1.42799 0.89355 1.02423 0.91338 1.24883 0.94940 0.99275 0.94896 1.69928 1.41755 1.28583 1.12423 0.86307 0.79130 0.82404 0.78581 1.20504 1.20991 1.19578 1.20454 0.95158 0.90434 0.89114 1.20432 1.01162 1.01188 0.89071 1.23228 1.04813 0.90760 1.03874 1.22814 0.95761 0.97093 1.00122 0.91525 0.91764 0.90450 0.88259 0.88602 0.78506 0.96414 0.88729 0.94610 0.92519 0.85372 0.88935 0.87898 0.87618 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.12 1.06 6.92 -4.04 -0.03 1.03 16 3 N -0.36 -4.79 3.58 -56.59 -0.20 -4.99 16 4 N -0.31 -4.73 12.50 30.87 0.39 -4.34 16 5 C 0.10 1.69 11.87 -16.97 -0.20 1.48 16 6 C -0.26 -4.78 6.12 -105.08 -0.64 -5.42 16 7 C 0.53 11.75 7.92 34.41 0.27 12.02 16 8 O -0.52 -12.24 13.68 -19.28 -0.26 -12.50 16 9 O -0.35 -8.73 9.72 -40.66 -0.40 -9.12 16 10 C 0.22 5.94 2.51 -27.88 -0.07 5.87 16 11 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 12 C -0.15 -3.91 9.43 37.16 0.35 -3.56 16 13 C -0.52 -14.76 8.83 -34.44 -0.30 -15.06 16 14 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 16 N -0.89 -25.55 11.52 55.43 0.64 -24.92 16 17 Si 0.91 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.18 2.73 6.45 -81.58 -0.53 2.21 16 22 C -0.10 -1.27 5.13 -91.77 -0.47 -1.74 16 23 C -0.19 -1.77 8.81 -26.69 -0.24 -2.00 16 24 C -0.12 -1.54 8.62 -26.70 -0.23 -1.77 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.69 5.06 -51.93 -0.26 0.42 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.20 2.90 8.06 -52.48 -0.42 2.47 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 2.58 6.24 -51.92 -0.32 2.26 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 0.79 6.85 -51.93 -0.36 0.44 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -32.34 330.96 -7.18 -39.52 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.51 Total: 1.28 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.80 Total: -6.24 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.82 Total: -34.25 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.66 Total: -21.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.34 -7.18 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.993 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds