Wall clock time and date at job start Mon Mar 30 2020 23:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46867 * 2 1 4 4 N 1.39932 * 125.74321 * 90.03223 * 3 2 1 5 5 C 1.30425 * 108.91592 * 179.97438 * 4 3 2 6 6 C 1.41340 * 108.01830 * 359.97438 * 5 4 3 7 7 C 1.47284 * 126.43167 * 179.97438 * 6 5 4 8 8 O 1.21521 * 120.00545 * 174.90549 * 7 6 5 9 9 O 1.34763 * 119.99746 * 355.17471 * 7 6 5 10 10 C 1.45199 * 116.99742 * 179.72882 * 9 7 6 11 11 H 1.09000 * 109.47542 * 29.99791 * 10 9 7 12 12 C 1.52997 * 109.46764 * 269.99573 * 10 9 7 13 13 C 1.50702 * 109.46960 * 150.00439 * 10 9 7 14 14 H 1.07998 * 119.99841 * 5.38068 * 13 10 9 15 15 C 1.37879 * 119.99950 * 185.39155 * 13 10 9 16 16 N 1.31516 * 119.99970 * 355.35153 * 15 13 10 17 17 Si 1.86799 * 119.99931 * 175.35443 * 15 13 10 18 18 H 1.48496 * 109.47149 * 94.99700 * 17 15 13 19 19 H 1.48505 * 109.47060 * 214.99450 * 17 15 13 20 20 H 1.48496 * 109.47324 * 334.99535 * 17 15 13 21 21 C 1.34223 * 125.74294 * 270.31222 * 3 2 1 22 22 C 1.50707 * 126.29872 * 0.02562 * 21 3 2 23 23 C 1.53001 * 117.49480 * 311.93663 * 22 21 3 24 24 C 1.52995 * 117.49654 * 243.27752 * 22 21 3 25 25 H 1.09007 * 109.46919 * 299.99947 * 1 2 3 26 26 H 1.09001 * 109.47548 * 59.99750 * 1 2 3 27 27 H 1.09003 * 109.47420 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46447 * 240.00136 * 2 1 3 29 29 H 1.08997 * 109.47075 * 120.00162 * 2 1 3 30 30 H 1.08008 * 125.99064 * 179.97438 * 5 4 3 31 31 H 1.09007 * 109.47321 * 64.91150 * 12 10 9 32 32 H 1.09007 * 109.47377 * 184.90281 * 12 10 9 33 33 H 1.08995 * 109.47628 * 304.90804 * 12 10 9 34 34 H 0.96995 * 119.99958 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.54574 * 97.60425 * 22 21 3 36 36 H 1.08996 * 117.50110 * 359.97438 * 23 22 21 37 37 H 1.09005 * 117.49399 * 145.01747 * 23 22 21 38 38 H 1.09001 * 117.49526 * 214.97248 * 24 22 21 39 39 H 1.08996 * 117.50239 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2913 2.1517 1.1358 5 6 2.7077 3.3286 0.7582 6 6 2.7177 3.3563 -0.6549 7 6 3.1185 4.4905 -1.5048 8 8 3.1706 4.3570 -2.7115 9 8 3.4326 5.6748 -0.9437 10 6 3.8245 6.7463 -1.8418 11 1 3.3216 6.6192 -2.8004 12 6 5.3396 6.7073 -2.0516 13 6 3.4346 8.0725 -1.2417 14 1 3.0211 8.1135 -0.2448 15 6 3.6056 9.2336 -1.9654 16 7 4.1925 9.1949 -3.1417 17 14 3.0036 10.8616 -1.2750 18 1 4.1221 11.5489 -0.5810 19 1 2.5090 11.7168 -2.3838 20 1 1.9011 10.6135 -0.3117 21 6 2.2740 2.1224 -1.0894 22 6 2.1112 1.6871 -2.5230 23 6 2.7003 0.3323 -2.9211 24 6 3.3703 1.6263 -3.3900 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.9946 4.1399 1.4109 31 1 5.6117 5.7849 -2.5648 32 1 5.6450 7.5623 -2.6548 33 1 5.8415 6.7468 -1.0849 34 1 4.3124 10.0116 -3.6509 35 1 1.1826 1.9934 -3.0047 36 1 3.2059 -0.2439 -2.1462 37 1 2.1594 -0.2526 -3.6650 38 1 3.2700 1.8920 -4.4424 39 1 4.3163 1.9015 -2.9238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892689867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:31 Heat of formation + Delta-G solvation = -9.188734 kcal Electronic energy + Delta-G solvation = -21797.550600 eV Core-core repulsion = 18514.107894 eV Total energy + Delta-G solvation = -3283.442706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66243 -40.69300 -38.10215 -37.26632 -35.47284 -35.19904 -31.89692 -31.35179 -30.59062 -27.41802 -26.01853 -24.37290 -23.80729 -23.33210 -22.65924 -21.27335 -20.30282 -18.95441 -18.41480 -17.58240 -17.16551 -16.81019 -16.32487 -16.22126 -15.68920 -15.59774 -15.31182 -14.79292 -14.42607 -14.17933 -13.83632 -13.48534 -13.12534 -13.09662 -13.00417 -12.94335 -12.80242 -12.57551 -12.39845 -12.36554 -12.14026 -12.10949 -11.52137 -11.44283 -11.26426 -11.11488 -10.97254 -10.54440 -10.44935 -9.78514 -8.26591 -6.42094 0.31403 1.01394 1.24958 1.42938 1.44723 1.57027 2.15300 2.27997 2.47332 2.70861 3.04504 3.28474 3.48661 3.83265 3.89943 4.01856 4.04909 4.11501 4.21341 4.33219 4.41877 4.56047 4.68383 4.69900 4.79244 4.84304 4.85379 4.91312 4.96760 5.07244 5.19035 5.20026 5.20741 5.35068 5.52740 5.66080 5.81444 5.95598 6.15951 6.43298 6.64812 7.11766 7.31785 8.81857 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.004325 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.028819 B = 6472.242878 C = 7044.446317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.344 5.344 4 N -0.311 5.311 5 C 0.098 3.902 6 C -0.303 4.303 7 C 0.524 3.476 8 O -0.543 6.543 9 O -0.363 6.363 10 C 0.221 3.779 11 H 0.010 0.990 12 C -0.139 4.139 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.981 3.019 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.266 1.266 21 C 0.197 3.803 22 C -0.121 4.121 23 C -0.140 4.140 24 C -0.146 4.146 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.205 0.795 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.270 0.730 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -21.086 3.701 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.122 5.122 4 N -0.130 5.130 5 C -0.088 4.088 6 C -0.316 4.316 7 C 0.371 3.629 8 O -0.436 6.436 9 O -0.279 6.279 10 C 0.168 3.832 11 H 0.028 0.972 12 C -0.196 4.196 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.191 1.191 21 C 0.062 3.938 22 C -0.141 4.141 23 C -0.176 4.176 24 C -0.184 4.184 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.222 0.778 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.846 -21.898 4.255 23.061 hybrid contribution 0.164 1.989 -0.645 2.097 sum -5.682 -19.909 3.611 21.016 Atomic orbital electron populations 1.22164 0.92897 1.04900 1.02311 1.22435 0.96524 0.75245 1.06894 1.48920 1.48148 1.13174 1.01995 1.77142 1.23335 1.04454 1.08072 1.24338 0.95233 0.95786 0.93487 1.19294 1.23474 0.94814 0.94008 1.20463 0.73349 0.82837 0.86295 1.90717 1.52290 1.84103 1.16449 1.86513 1.77270 1.20714 1.43421 1.20294 0.92587 0.82075 0.88294 0.97192 1.21957 0.97085 1.00236 1.00358 1.21297 1.44030 0.90368 1.02729 0.91593 1.25815 0.94496 1.02912 0.95074 1.70041 1.41987 1.29892 1.13499 0.85202 0.78878 0.77448 0.78075 1.19240 1.20197 1.19058 1.20711 0.92985 0.89447 0.90611 1.20565 1.01194 1.04740 0.87570 1.23378 1.01757 0.88914 1.03580 1.22761 0.94769 1.00977 0.99861 0.93201 0.92462 0.87056 0.85680 0.86949 0.77815 0.95854 0.90430 0.93615 0.92042 0.85034 0.87399 0.84461 0.87803 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 71.98 0.74 -1.25 16 2 C 0.11 1.50 6.92 86.38 0.60 2.10 16 3 N -0.34 -8.57 3.58 -332.95 -1.19 -9.76 16 4 N -0.31 -9.31 12.50 -56.25 -0.70 -10.01 16 5 C 0.10 3.27 11.87 85.67 1.02 4.29 16 6 C -0.30 -11.33 6.12 -20.16 -0.12 -11.45 16 7 C 0.52 24.38 7.92 70.20 0.56 24.94 16 8 O -0.54 -26.86 13.68 19.77 0.27 -26.59 16 9 O -0.36 -18.72 9.72 -56.74 -0.55 -19.27 16 10 C 0.22 12.62 2.51 29.85 0.07 12.69 16 11 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 12 C -0.14 -7.39 9.43 71.98 0.68 -6.71 16 13 C -0.55 -32.00 8.83 25.60 0.23 -31.78 16 14 H 0.07 3.79 7.82 -2.91 -0.02 3.77 16 15 C 0.02 0.94 5.35 84.65 0.45 1.40 16 16 N -0.92 -53.67 11.52 21.45 0.25 -53.43 16 17 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C 0.20 5.83 6.45 42.17 0.27 6.10 16 22 C -0.12 -2.95 5.13 -11.54 -0.06 -3.01 16 23 C -0.14 -2.12 8.81 30.62 0.27 -1.85 16 24 C -0.15 -3.68 8.62 30.62 0.26 -3.42 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.13 1.12 5.06 -2.39 -0.01 1.11 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.21 6.18 8.06 -2.91 -0.02 6.15 16 31 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 4.39 6.24 -2.38 -0.01 4.37 16 33 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.13 3.13 8.14 -2.39 -0.02 3.12 16 36 H 0.11 1.35 6.85 -2.39 -0.02 1.33 16 37 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.90 330.96 6.11 -66.79 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.05 Total: 14.34 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.96 Total: -7.94 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -1.65 Total: -73.20 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.28 Total: -45.86 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.90 6.11 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.600 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds