Wall clock time and date at job start Mon Mar 30 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47115 * 2 1 4 4 N 1.39934 * 125.73999 * 270.16656 * 3 2 1 5 5 C 1.30437 * 108.91738 * 180.24937 * 4 3 2 6 6 C 1.41341 * 108.01182 * 359.76613 * 5 4 3 7 7 C 1.47284 * 126.42752 * 180.02562 * 6 5 4 8 8 O 1.21534 * 120.00071 * 174.59919 * 7 6 5 9 9 O 1.34747 * 120.00046 * 354.60483 * 7 6 5 10 10 C 1.45203 * 117.00124 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47017 * 329.99700 * 10 9 7 12 12 C 1.53000 * 109.47330 * 89.99984 * 10 9 7 13 13 C 1.50704 * 109.47168 * 209.99700 * 10 9 7 14 14 H 1.07997 * 119.99909 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99957 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00390 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99868 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47150 * 60.00305 * 17 15 13 19 19 H 1.48503 * 109.47090 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47497 * 300.00083 * 17 15 13 21 21 C 1.34222 * 125.74703 * 90.00016 * 3 2 1 22 22 C 1.50700 * 126.29232 * 0.02570 * 21 3 2 23 23 C 1.52997 * 117.50316 * 48.40697 * 22 21 3 24 24 C 1.52995 * 117.50106 * 117.07130 * 22 21 3 25 25 H 1.08997 * 109.47162 * 59.99936 * 1 2 3 26 26 H 1.09003 * 109.46764 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47234 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47358 * 240.00221 * 2 1 3 29 29 H 1.08997 * 109.47779 * 119.99624 * 2 1 3 30 30 H 1.07992 * 125.99502 * 179.76811 * 5 4 3 31 31 H 1.08997 * 109.47302 * 59.99890 * 12 10 9 32 32 H 1.08992 * 109.47161 * 180.02562 * 12 10 9 33 33 H 1.09007 * 109.46784 * 299.99854 * 12 10 9 34 34 H 0.96999 * 120.00252 * 179.97438 * 16 15 13 35 35 H 1.09010 * 115.54940 * 262.74063 * 22 21 3 36 36 H 1.08990 * 117.50478 * 215.00364 * 23 22 21 37 37 H 1.09007 * 117.49684 * 0.02718 * 23 22 21 38 38 H 1.08998 * 117.49907 * 359.97227 * 24 22 21 39 39 H 1.08995 * 117.50398 * 144.99552 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2876 2.1530 -1.1358 5 6 2.7099 3.3279 -0.7583 6 6 2.7219 3.3548 0.6548 7 6 3.1290 4.4869 1.5045 8 8 3.0010 4.4178 2.7112 9 8 3.6432 5.5992 0.9442 10 6 4.0221 6.6752 1.8426 11 1 3.3817 6.6547 2.7244 12 6 5.4809 6.4952 2.2673 13 6 3.8637 7.9976 1.1374 14 1 3.5130 8.0265 0.1164 15 6 4.1656 9.1706 1.7961 16 7 4.5922 9.1355 3.0396 17 14 3.9700 10.8097 0.9217 18 1 2.5544 10.9845 0.5084 19 1 4.3574 11.9102 1.8406 20 1 4.8433 10.8376 -0.2790 21 6 2.2797 2.1205 1.0893 22 6 2.1253 1.6822 2.5229 23 6 2.7245 0.3307 2.9170 24 6 3.3880 1.6283 3.3851 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.9996 4.1381 -1.4110 31 1 6.1212 6.5157 1.3855 32 1 5.7651 7.3026 2.9420 33 1 5.5954 5.5387 2.7774 34 1 4.8050 9.9607 3.5029 35 1 1.1966 1.9818 3.0087 36 1 2.1902 -0.2588 3.6619 37 1 3.2308 -0.2412 2.1393 38 1 4.3306 1.9095 2.9153 39 1 3.2902 1.8924 4.4380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892689868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:34 Heat of formation + Delta-G solvation = 9.876546 kcal Electronic energy + Delta-G solvation = -21798.478208 eV Core-core repulsion = 18515.862235 eV Total energy + Delta-G solvation = -3282.615973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45098 -38.88062 -37.10399 -35.41497 -34.53068 -33.13496 -30.28034 -30.03230 -29.11763 -25.26705 -24.82351 -23.33353 -22.59516 -22.25481 -21.04445 -19.82227 -18.97998 -17.34085 -16.47417 -16.20124 -15.75251 -15.24787 -14.84275 -14.68028 -14.57109 -14.40888 -14.20726 -13.40834 -12.92746 -12.67667 -12.37300 -12.23369 -11.89893 -11.83481 -11.69367 -11.43335 -11.17377 -11.07942 -10.98553 -10.77228 -10.58816 -10.31190 -10.23381 -10.20758 -9.46191 -9.38599 -9.34028 -8.81451 -8.49974 -8.40083 -6.11662 -4.17803 1.59216 2.28977 2.39326 3.31082 3.34186 3.37002 3.61464 3.86952 3.90334 4.26838 4.35890 4.47874 4.69738 4.74952 4.87165 4.88999 5.06314 5.15785 5.21470 5.30117 5.42624 5.44596 5.56021 5.70604 5.78741 5.85413 5.99606 6.12456 6.22471 6.60207 6.75614 6.85793 6.98773 7.02207 7.30018 7.65880 7.68343 7.82790 8.04667 8.24049 8.78107 9.03948 9.47578 10.95802 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.004304 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.173441 B = 6503.513073 C = 7145.753190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.358 5.358 4 N -0.306 5.306 5 C 0.103 3.897 6 C -0.261 4.261 7 C 0.529 3.471 8 O -0.522 6.522 9 O -0.354 6.354 10 C 0.218 3.782 11 H 0.046 0.954 12 C -0.153 4.153 13 C -0.519 4.519 14 H 0.068 0.932 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.911 3.089 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.180 3.820 22 C -0.096 4.096 23 C -0.189 4.189 24 C -0.126 4.126 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.198 0.802 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -19.062 -2.760 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.137 5.137 4 N -0.125 5.125 5 C -0.084 4.084 6 C -0.274 4.274 7 C 0.374 3.626 8 O -0.413 6.413 9 O -0.270 6.270 10 C 0.166 3.834 11 H 0.064 0.936 12 C -0.211 4.211 13 C -0.557 4.557 14 H 0.086 0.914 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.738 3.262 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.048 3.952 22 C -0.116 4.116 23 C -0.226 4.226 24 C -0.163 4.163 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.215 0.785 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.532 -19.800 -3.291 20.820 hybrid contribution 0.091 1.535 0.299 1.566 sum -5.441 -18.265 -2.991 19.292 Atomic orbital electron populations 1.22171 0.94046 1.03049 1.03496 1.21875 0.95598 0.77756 1.04769 1.48471 1.50002 1.12066 1.03164 1.77188 1.23481 1.04729 1.07099 1.24227 0.95050 0.95067 0.94101 1.19385 1.19627 0.94909 0.93494 1.19826 0.74530 0.82423 0.85859 1.90749 1.53337 1.81769 1.15470 1.86524 1.71781 1.24791 1.43911 1.20567 0.92770 0.80935 0.89158 0.93580 1.22147 0.98116 1.00133 1.00723 1.21010 1.45521 0.88913 1.00247 0.91390 1.24868 0.94803 0.99303 0.94977 1.69893 1.44391 1.28135 1.10414 0.86356 0.78768 0.81913 0.79208 1.20023 1.21111 1.19969 1.20445 0.95117 0.90525 0.89109 1.20424 1.01026 1.01081 0.89060 1.23217 1.04724 0.90755 1.03857 1.22836 0.95739 0.97495 1.00275 0.91519 0.90447 0.91771 0.88598 0.88267 0.78485 0.94562 0.88396 0.96555 0.92454 0.85264 0.87856 0.88911 0.88554 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.12 1.05 6.92 -4.04 -0.03 1.03 16 3 N -0.36 -4.78 3.58 -56.59 -0.20 -4.98 16 4 N -0.31 -4.73 12.50 30.87 0.39 -4.34 16 5 C 0.10 1.69 11.87 -16.96 -0.20 1.49 16 6 C -0.26 -4.78 6.12 -105.08 -0.64 -5.42 16 7 C 0.53 11.76 7.92 34.41 0.27 12.04 16 8 O -0.52 -12.30 13.95 -19.29 -0.27 -12.57 16 9 O -0.35 -8.73 9.72 -40.62 -0.39 -9.13 16 10 C 0.22 5.97 2.56 -27.88 -0.07 5.90 16 11 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 12 C -0.15 -3.96 9.33 37.16 0.35 -3.62 16 13 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 14 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 17 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.18 2.72 6.45 -81.59 -0.53 2.20 16 22 C -0.10 -1.23 5.01 -91.78 -0.46 -1.69 16 23 C -0.19 -1.75 8.80 -26.69 -0.23 -1.98 16 24 C -0.13 -1.60 8.96 -26.70 -0.24 -1.84 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.68 5.10 -51.93 -0.26 0.42 16 30 H 0.20 2.91 8.06 -52.49 -0.42 2.49 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 33 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.13 1.60 8.14 -51.92 -0.42 1.18 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.79 6.89 -51.93 -0.36 0.44 16 38 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 331.14 15.07 4.99 4.99 Total: -1.00 -32.36 331.14 -7.19 -39.55 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.51 Total: 1.35 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.81 Total: -6.26 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.81 Total: -34.25 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.66 Total: -21.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.36 -7.19 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.431 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds