Wall clock time and date at job start Mon Mar 30 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47115 * 2 1 4 4 N 1.39934 * 125.73999 * 270.16656 * 3 2 1 5 5 C 1.30437 * 108.91738 * 180.24937 * 4 3 2 6 6 C 1.41341 * 108.01182 * 359.76613 * 5 4 3 7 7 C 1.47284 * 126.42752 * 180.02562 * 6 5 4 8 8 O 1.21534 * 120.00071 * 174.59919 * 7 6 5 9 9 O 1.34747 * 120.00046 * 354.60483 * 7 6 5 10 10 C 1.45203 * 117.00124 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47017 * 329.99700 * 10 9 7 12 12 C 1.53000 * 109.47330 * 89.99984 * 10 9 7 13 13 C 1.50704 * 109.47168 * 209.99700 * 10 9 7 14 14 H 1.07997 * 119.99909 * 0.02562 * 13 10 9 15 15 C 1.37871 * 119.99957 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00390 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99868 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47150 * 60.00305 * 17 15 13 19 19 H 1.48503 * 109.47090 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47497 * 300.00083 * 17 15 13 21 21 C 1.34222 * 125.74703 * 90.00016 * 3 2 1 22 22 C 1.50700 * 126.29232 * 0.02570 * 21 3 2 23 23 C 1.52997 * 117.50316 * 48.40697 * 22 21 3 24 24 C 1.52995 * 117.50106 * 117.07130 * 22 21 3 25 25 H 1.08997 * 109.47162 * 59.99936 * 1 2 3 26 26 H 1.09003 * 109.46764 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47234 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47358 * 240.00221 * 2 1 3 29 29 H 1.08997 * 109.47779 * 119.99624 * 2 1 3 30 30 H 1.07992 * 125.99502 * 179.76811 * 5 4 3 31 31 H 1.08997 * 109.47302 * 59.99890 * 12 10 9 32 32 H 1.08992 * 109.47161 * 180.02562 * 12 10 9 33 33 H 1.09007 * 109.46784 * 299.99854 * 12 10 9 34 34 H 0.96999 * 120.00252 * 179.97438 * 16 15 13 35 35 H 1.09010 * 115.54940 * 262.74063 * 22 21 3 36 36 H 1.08990 * 117.50478 * 215.00364 * 23 22 21 37 37 H 1.09007 * 117.49684 * 0.02718 * 23 22 21 38 38 H 1.08998 * 117.49907 * 359.97227 * 24 22 21 39 39 H 1.08995 * 117.50398 * 144.99552 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2876 2.1530 -1.1358 5 6 2.7099 3.3279 -0.7583 6 6 2.7219 3.3548 0.6548 7 6 3.1290 4.4869 1.5045 8 8 3.0010 4.4178 2.7112 9 8 3.6432 5.5992 0.9442 10 6 4.0221 6.6752 1.8426 11 1 3.3817 6.6547 2.7244 12 6 5.4809 6.4952 2.2673 13 6 3.8637 7.9976 1.1374 14 1 3.5130 8.0265 0.1164 15 6 4.1656 9.1706 1.7961 16 7 4.5922 9.1355 3.0396 17 14 3.9700 10.8097 0.9217 18 1 2.5544 10.9845 0.5084 19 1 4.3574 11.9102 1.8406 20 1 4.8433 10.8376 -0.2790 21 6 2.2797 2.1205 1.0893 22 6 2.1253 1.6822 2.5229 23 6 2.7245 0.3307 2.9170 24 6 3.3880 1.6283 3.3851 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.9996 4.1381 -1.4110 31 1 6.1212 6.5157 1.3855 32 1 5.7651 7.3026 2.9420 33 1 5.5954 5.5387 2.7774 34 1 4.8050 9.9607 3.5029 35 1 1.1966 1.9818 3.0087 36 1 2.1902 -0.2588 3.6619 37 1 3.2308 -0.2412 2.1393 38 1 4.3306 1.9095 2.9153 39 1 3.2902 1.8924 4.4380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892689868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:34 Heat of formation + Delta-G solvation = -8.785203 kcal Electronic energy + Delta-G solvation = -21799.287443 eV Core-core repulsion = 18515.862235 eV Total energy + Delta-G solvation = -3283.425208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.66544 -40.70153 -38.10701 -37.28021 -35.48015 -35.21920 -31.86936 -31.35081 -30.58571 -27.42710 -26.02149 -24.38662 -23.80560 -23.33926 -22.65963 -21.28362 -20.32238 -18.93364 -18.42079 -17.58338 -17.14294 -16.79883 -16.37278 -16.24722 -15.67555 -15.60448 -15.31677 -14.79500 -14.43980 -14.16085 -13.85223 -13.48988 -13.14836 -13.08456 -13.00257 -12.94078 -12.78266 -12.56996 -12.41200 -12.34402 -12.14399 -12.11013 -11.54163 -11.47634 -11.26665 -11.14219 -10.93524 -10.55836 -10.45502 -9.79212 -8.25461 -6.41805 0.31001 1.00921 1.24599 1.43330 1.47288 1.55242 2.15816 2.26001 2.47688 2.69741 3.05033 3.27716 3.48375 3.82433 3.88477 4.01717 4.04906 4.11240 4.20949 4.32900 4.41672 4.56080 4.67690 4.70457 4.78948 4.83770 4.84430 4.90656 4.96123 5.05083 5.17546 5.19916 5.22130 5.35019 5.52224 5.67754 5.81211 5.96652 6.15478 6.42938 6.64096 7.11356 7.31696 8.82215 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.004304 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.173441 B = 6503.513073 C = 7145.753190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.344 5.344 4 N -0.311 5.311 5 C 0.098 3.902 6 C -0.303 4.303 7 C 0.525 3.475 8 O -0.544 6.544 9 O -0.362 6.362 10 C 0.222 3.778 11 H 0.008 0.992 12 C -0.139 4.139 13 C -0.549 4.549 14 H 0.066 0.934 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 0.982 3.018 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.264 1.264 21 C 0.197 3.803 22 C -0.118 4.118 23 C -0.139 4.139 24 C -0.152 4.152 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.205 0.795 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 -21.067 -3.508 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.122 5.122 4 N -0.130 5.130 5 C -0.089 4.089 6 C -0.316 4.316 7 C 0.371 3.629 8 O -0.437 6.437 9 O -0.279 6.279 10 C 0.168 3.832 11 H 0.026 0.974 12 C -0.197 4.197 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.182 4.182 16 N -0.555 5.555 17 Si 0.805 3.195 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.189 1.189 21 C 0.063 3.937 22 C -0.138 4.138 23 C -0.175 4.175 24 C -0.190 4.190 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.222 0.778 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.303 -21.856 -4.062 23.107 hybrid contribution 0.272 1.992 0.566 2.089 sum -6.031 -19.864 -3.496 21.052 Atomic orbital electron populations 1.22161 0.92888 1.04905 1.02314 1.22434 0.96535 0.75219 1.06900 1.48923 1.48135 1.13170 1.01985 1.77147 1.23364 1.04403 1.08066 1.24337 0.95209 0.95813 0.93492 1.19293 1.23226 0.95079 0.94004 1.20459 0.73761 0.82413 0.86272 1.90717 1.54398 1.82046 1.16512 1.86508 1.72620 1.25302 1.43456 1.20287 0.92647 0.81979 0.88263 0.97404 1.21960 0.97433 0.99762 1.00563 1.21282 1.46875 0.89961 1.00486 0.91559 1.25805 0.93802 1.02976 0.95643 1.70013 1.44328 1.29407 1.11719 0.85253 0.79025 0.76926 0.78305 1.19417 1.20126 1.18870 1.20705 0.92900 0.89525 0.90619 1.20554 1.01067 1.04641 0.87537 1.23371 1.01637 0.88915 1.03593 1.22797 0.94758 1.01359 1.00037 0.93192 0.87050 0.92462 0.86951 0.85666 0.77849 0.93862 0.90035 0.95865 0.92022 0.84947 0.84401 0.87389 0.91064 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.24 71.98 0.74 -1.23 16 2 C 0.11 1.49 6.92 86.38 0.60 2.09 16 3 N -0.34 -8.55 3.58 -332.96 -1.19 -9.75 16 4 N -0.31 -9.31 12.50 -56.25 -0.70 -10.01 16 5 C 0.10 3.28 11.87 85.66 1.02 4.30 16 6 C -0.30 -11.35 6.12 -20.16 -0.12 -11.48 16 7 C 0.52 24.45 7.92 70.20 0.56 25.01 16 8 O -0.54 -27.03 13.95 19.73 0.28 -26.76 16 9 O -0.36 -18.75 9.72 -56.58 -0.55 -19.30 16 10 C 0.22 12.69 2.56 29.85 0.08 12.77 16 11 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 12 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 13 C -0.55 -32.13 8.90 25.60 0.23 -31.91 16 14 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 15 C 0.02 0.98 5.30 84.65 0.45 1.43 16 16 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 17 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 C 0.20 5.83 6.45 42.17 0.27 6.10 16 22 C -0.12 -2.87 5.01 -11.54 -0.06 -2.93 16 23 C -0.14 -2.08 8.80 30.62 0.27 -1.81 16 24 C -0.15 -3.80 8.96 30.62 0.27 -3.53 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.13 1.11 5.10 -2.39 -0.01 1.10 16 30 H 0.20 6.21 8.06 -2.91 -0.02 6.19 16 31 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 4.63 6.07 -2.39 -0.01 4.61 16 33 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.13 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.34 6.89 -2.38 -0.02 1.33 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -72.97 331.14 6.12 -66.85 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.05 Total: 14.51 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.97 Total: -7.99 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.65 Total: -73.12 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.27 Total: -46.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.97 6.12 -66.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892689868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.068 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds