Wall clock time and date at job start Tue Mar 31 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46489 * 120.00301 * 2 1 4 4 C 1.38430 * 119.99589 * 179.97438 * 2 1 3 5 5 C 1.39413 * 119.53241 * 5.00609 * 4 2 1 6 6 C 1.36835 * 119.38429 * 179.97438 * 5 4 2 7 7 C 1.40409 * 118.48875 * 359.97438 * 6 5 4 8 8 C 1.47395 * 120.48462 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99800 * 359.97438 * 8 7 6 10 10 O 1.34760 * 120.00429 * 180.02562 * 8 7 6 11 11 C 1.45203 * 116.99961 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46612 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46730 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46955 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00532 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00018 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99962 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46966 * 120.00359 * 18 16 14 21 21 H 1.48497 * 109.46714 * 240.00126 * 18 16 14 22 22 C 1.39628 * 119.03886 * 359.97438 * 7 6 5 23 23 N 1.31660 * 120.50973 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47033 * 270.00662 * 1 2 3 25 25 H 1.08996 * 109.46496 * 30.00058 * 1 2 3 26 26 H 1.08995 * 109.46929 * 150.00449 * 1 2 3 27 27 H 1.09003 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47000 * 299.99487 * 3 2 1 29 29 H 1.08999 * 109.47959 * 59.99522 * 3 2 1 30 30 H 1.08000 * 120.31295 * 359.97438 * 5 4 2 31 31 H 1.07999 * 120.75656 * 179.72515 * 6 5 4 32 32 H 1.09002 * 109.47314 * 299.99821 * 11 10 8 33 33 H 1.08997 * 109.46970 * 60.00350 * 11 10 8 34 34 H 1.08994 * 109.47500 * 300.00342 * 12 11 10 35 35 H 1.08997 * 109.46957 * 60.00600 * 12 11 10 36 36 H 1.09002 * 109.47297 * 300.00141 * 13 12 11 37 37 H 1.09000 * 109.47367 * 60.00611 * 13 12 11 38 38 H 0.96999 * 119.99662 * 180.02562 * 17 16 14 39 39 H 1.07994 * 119.74878 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1571 -1.1989 0.0005 5 6 1.4542 -2.3982 -0.1048 6 6 2.1413 -3.5815 -0.1045 7 6 3.5408 -3.5432 0.0023 8 6 4.3248 -4.7913 0.0076 9 8 3.7602 -5.8638 -0.0803 10 8 5.6676 -4.7433 0.1110 11 6 6.3745 -6.0116 0.1103 12 6 7.8782 -5.7573 0.2340 13 6 8.6231 -7.0936 0.2338 14 6 10.1041 -6.8432 0.3563 15 1 10.4768 -5.8320 0.4276 16 6 10.9834 -7.9050 0.3774 17 7 10.5297 -9.1363 0.2901 18 14 12.8192 -7.5946 0.5299 19 1 13.0689 -6.1330 0.6111 20 1 13.3323 -8.2540 1.7575 21 1 13.5155 -8.1501 -0.6582 22 6 4.1792 -2.3055 0.1033 23 7 3.4796 -1.1902 0.0991 24 1 -0.3633 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 3.2693 1.0694 -0.0005 28 1 1.9343 1.8402 -0.8901 29 1 1.9343 1.8403 0.8899 30 1 0.3772 -2.3935 -0.1859 31 1 1.6188 -4.5236 -0.1805 32 1 6.0374 -6.6161 0.9523 33 1 6.1713 -6.5403 -0.8210 34 1 8.2150 -5.1530 -0.6082 35 1 8.0818 -5.2284 1.1651 36 1 8.2862 -7.6976 1.0764 37 1 8.4196 -7.6230 -0.6970 38 1 11.1484 -9.8833 0.3053 39 1 5.2551 -2.2627 0.1864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914963270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:43 Heat of formation + Delta-G solvation = -49.259887 kcal Electronic energy + Delta-G solvation = -20245.164195 eV Core-core repulsion = 16959.983874 eV Total energy + Delta-G solvation = -3285.180322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86278 -39.69480 -36.97447 -36.25279 -33.94890 -32.87963 -31.77999 -30.94427 -28.70084 -27.26030 -26.07904 -23.60237 -23.49986 -22.35442 -20.71480 -20.27872 -18.16833 -17.63308 -16.84526 -16.47280 -16.21372 -15.89437 -15.75788 -15.05277 -14.66094 -14.43934 -14.15446 -13.70014 -13.52438 -13.21048 -13.02355 -12.78931 -12.52383 -12.31278 -12.13660 -12.08192 -11.83452 -10.96477 -10.66659 -10.60832 -10.43626 -10.39977 -10.33507 -10.11166 -9.69328 -9.67670 -9.46556 -9.12074 -8.36718 -8.00449 -6.01316 -4.04025 0.60414 1.09223 2.45353 2.67862 2.95607 3.31930 3.39308 3.43848 3.71087 4.13982 4.45574 4.48443 4.64739 4.73802 4.77444 4.84585 4.97640 5.04487 5.17291 5.18588 5.34778 5.41291 5.51949 5.63906 5.65316 5.71368 5.92116 6.08322 6.17450 6.43918 6.55759 6.58791 6.87007 6.89195 7.02755 7.63677 7.73422 7.74738 7.97325 8.01824 8.38797 9.02604 9.60165 11.10199 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.002556 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.877647 B =10951.569849 C =11652.938547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.608 5.608 3 C 0.088 3.912 4 C 0.425 3.575 5 C -0.253 4.253 6 C 0.029 3.971 7 C -0.240 4.240 8 C 0.515 3.485 9 O -0.518 6.518 10 O -0.356 6.356 11 C 0.070 3.930 12 C -0.109 4.109 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.216 3.784 23 N -0.551 5.551 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 19.552 -0.905 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.320 5.320 3 C -0.055 4.055 4 C 0.190 3.810 5 C -0.277 4.277 6 C 0.004 3.996 7 C -0.246 4.246 8 C 0.359 3.641 9 O -0.408 6.408 10 O -0.272 6.272 11 C -0.003 4.003 12 C -0.147 4.147 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.056 3.944 23 N -0.269 5.269 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.710 20.032 -0.869 29.553 hybrid contribution 0.502 -0.913 0.016 1.043 sum -21.208 19.118 -0.852 28.566 Atomic orbital electron populations 1.21796 0.78169 1.03384 1.01993 1.46230 1.05516 1.03422 1.76824 1.21733 0.99280 0.83787 1.00679 1.18602 0.88777 0.86032 0.87612 1.21101 1.01371 0.91270 1.14004 1.21153 0.92049 0.98795 0.87624 1.19885 0.94003 0.92858 1.17868 1.20728 0.81696 0.88686 0.72946 1.90819 1.71948 1.31306 1.46713 1.86524 1.19107 1.38494 1.83100 1.23504 0.93112 0.81456 1.02196 1.21764 0.88842 1.02130 1.01921 1.19059 0.94525 0.90121 0.97696 1.21218 0.91352 0.92919 1.50300 0.92357 1.25041 0.99106 0.95140 0.95276 1.69977 1.34697 0.98156 1.50561 0.86491 0.85265 0.78370 0.77625 1.19661 1.20998 1.21004 1.22989 1.00295 0.85363 0.85711 1.67311 1.05703 1.31382 1.22462 0.92517 0.90711 0.90683 0.88625 0.92662 0.92667 0.84236 0.83608 0.91474 0.91481 0.92095 0.92101 0.96222 0.96217 0.92973 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.31 59.85 0.62 1.01 16 2 N -0.61 -4.75 3.37 -189.70 -0.64 -5.39 16 3 C 0.09 0.57 10.71 59.84 0.64 1.21 16 4 C 0.43 4.39 7.36 -155.29 -1.14 3.25 16 5 C -0.25 -2.36 9.20 -39.65 -0.36 -2.72 16 6 C 0.03 0.32 9.65 -39.27 -0.38 -0.06 16 7 C -0.24 -3.17 5.89 -104.83 -0.62 -3.79 16 8 C 0.51 8.40 7.89 34.46 0.27 8.67 16 9 O -0.52 -9.68 16.20 -19.28 -0.31 -9.99 16 10 O -0.36 -6.08 9.49 -40.65 -0.39 -6.47 16 11 C 0.07 1.32 5.48 37.16 0.20 1.53 16 12 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.22 2.64 10.79 -17.11 -0.18 2.45 16 23 N -0.55 -6.52 8.81 -12.13 -0.11 -6.63 16 24 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.20 8.07 -51.93 -0.42 -0.21 16 26 H 0.07 0.27 5.95 -51.93 -0.31 -0.04 16 27 H 0.10 0.78 6.80 -51.93 -0.35 0.42 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.89 5.99 -52.49 -0.31 0.58 16 31 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.18 1.94 7.61 -52.49 -0.40 1.54 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -33.26 335.82 -7.87 -41.13 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.55 Total: -4.16 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.65 Total: -3.95 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.01 Total: -38.30 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.70 Total: -16.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.26 -7.87 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914963270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.131 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds