Wall clock time and date at job start Tue Mar 31 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46489 * 120.00301 * 2 1 4 4 C 1.38430 * 119.99589 * 179.97438 * 2 1 3 5 5 C 1.39413 * 119.53241 * 5.00609 * 4 2 1 6 6 C 1.36835 * 119.38429 * 179.97438 * 5 4 2 7 7 C 1.40409 * 118.48875 * 359.97438 * 6 5 4 8 8 C 1.47395 * 120.48462 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99800 * 359.97438 * 8 7 6 10 10 O 1.34760 * 120.00429 * 180.02562 * 8 7 6 11 11 C 1.45203 * 116.99961 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46612 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46730 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46955 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00532 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00018 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99962 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47009 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46966 * 120.00359 * 18 16 14 21 21 H 1.48497 * 109.46714 * 240.00126 * 18 16 14 22 22 C 1.39628 * 119.03886 * 359.97438 * 7 6 5 23 23 N 1.31660 * 120.50973 * 0.02562 * 22 7 6 24 24 H 1.09000 * 109.47033 * 270.00662 * 1 2 3 25 25 H 1.08996 * 109.46496 * 30.00058 * 1 2 3 26 26 H 1.08995 * 109.46929 * 150.00449 * 1 2 3 27 27 H 1.09003 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47000 * 299.99487 * 3 2 1 29 29 H 1.08999 * 109.47959 * 59.99522 * 3 2 1 30 30 H 1.08000 * 120.31295 * 359.97438 * 5 4 2 31 31 H 1.07999 * 120.75656 * 179.72515 * 6 5 4 32 32 H 1.09002 * 109.47314 * 299.99821 * 11 10 8 33 33 H 1.08997 * 109.46970 * 60.00350 * 11 10 8 34 34 H 1.08994 * 109.47500 * 300.00342 * 12 11 10 35 35 H 1.08997 * 109.46957 * 60.00600 * 12 11 10 36 36 H 1.09002 * 109.47297 * 300.00141 * 13 12 11 37 37 H 1.09000 * 109.47367 * 60.00611 * 13 12 11 38 38 H 0.96999 * 119.99662 * 180.02562 * 17 16 14 39 39 H 1.07994 * 119.74878 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1571 -1.1989 0.0005 5 6 1.4542 -2.3982 -0.1048 6 6 2.1413 -3.5815 -0.1045 7 6 3.5408 -3.5432 0.0023 8 6 4.3248 -4.7913 0.0076 9 8 3.7602 -5.8638 -0.0803 10 8 5.6676 -4.7433 0.1110 11 6 6.3745 -6.0116 0.1103 12 6 7.8782 -5.7573 0.2340 13 6 8.6231 -7.0936 0.2338 14 6 10.1041 -6.8432 0.3563 15 1 10.4768 -5.8320 0.4276 16 6 10.9834 -7.9050 0.3774 17 7 10.5297 -9.1363 0.2901 18 14 12.8192 -7.5946 0.5299 19 1 13.0689 -6.1330 0.6111 20 1 13.3323 -8.2540 1.7575 21 1 13.5155 -8.1501 -0.6582 22 6 4.1792 -2.3055 0.1033 23 7 3.4796 -1.1902 0.0991 24 1 -0.3633 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 3.2693 1.0694 -0.0005 28 1 1.9343 1.8402 -0.8901 29 1 1.9343 1.8403 0.8899 30 1 0.3772 -2.3935 -0.1859 31 1 1.6188 -4.5236 -0.1805 32 1 6.0374 -6.6161 0.9523 33 1 6.1713 -6.5403 -0.8210 34 1 8.2150 -5.1530 -0.6082 35 1 8.0818 -5.2284 1.1651 36 1 8.2862 -7.6976 1.0764 37 1 8.4196 -7.6230 -0.6970 38 1 11.1484 -9.8833 0.3053 39 1 5.2551 -2.2627 0.1864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914963270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:43 Heat of formation + Delta-G solvation = -67.985698 kcal Electronic energy + Delta-G solvation = -20245.976208 eV Core-core repulsion = 16959.983874 eV Total energy + Delta-G solvation = -3285.992334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.83957 -40.85234 -37.90745 -37.42284 -35.91280 -33.74586 -33.66748 -31.89569 -29.17375 -29.01871 -27.04686 -25.21200 -24.40112 -23.42662 -22.14412 -21.75031 -19.19117 -18.70815 -18.37746 -17.71479 -17.62505 -17.19686 -16.47136 -16.36444 -15.81490 -15.63660 -15.33937 -14.84032 -14.45902 -14.31614 -14.07814 -13.76759 -13.75245 -13.67615 -13.32613 -13.00057 -12.84267 -12.81441 -12.49047 -12.37024 -12.06252 -11.86583 -11.45914 -11.39870 -11.23020 -11.20884 -10.88861 -10.56869 -10.53292 -8.70067 -8.20803 -6.32037 -0.34290 0.27595 1.42252 1.42587 1.52233 1.56023 1.64318 1.87734 2.42473 2.80916 3.13105 3.38375 3.67642 3.82962 3.89449 4.03224 4.04146 4.09737 4.29181 4.43564 4.48501 4.52395 4.62381 4.75732 4.81275 4.82481 4.89517 4.94216 4.99519 5.10109 5.15780 5.37759 5.42667 5.53105 5.65852 5.81774 5.85761 6.17323 6.20573 6.68888 6.84245 6.94451 7.37331 8.91702 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.002556 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.877647 B =10951.569849 C =11652.938547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.605 5.605 3 C 0.083 3.917 4 C 0.418 3.582 5 C -0.242 4.242 6 C 0.025 3.975 7 C -0.263 4.263 8 C 0.515 3.485 9 O -0.549 6.549 10 O -0.353 6.353 11 C 0.080 3.920 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.219 3.781 23 N -0.567 5.567 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.068 0.932 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.955 22.033 -0.896 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.314 5.314 3 C -0.059 4.059 4 C 0.181 3.819 5 C -0.266 4.266 6 C 0.000 4.000 7 C -0.270 4.270 8 C 0.363 3.637 9 O -0.441 6.441 10 O -0.270 6.270 11 C 0.006 3.994 12 C -0.131 4.131 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.204 1.204 22 C 0.058 3.942 23 N -0.285 5.285 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.191 0.809 31 H 0.169 0.831 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -22.775 22.572 -0.860 32.077 hybrid contribution 0.650 -1.522 0.009 1.655 sum -22.125 21.050 -0.851 30.551 Atomic orbital electron populations 1.22092 0.75905 1.04998 1.03131 1.46625 1.06995 1.02922 1.74861 1.21840 0.98227 0.83538 1.02301 1.18977 0.88586 0.87447 0.86886 1.21371 1.02840 0.90024 1.12407 1.21287 0.91230 0.99883 0.87558 1.19766 0.94652 0.91515 1.21096 1.21288 0.81060 0.89546 0.71845 1.90796 1.72134 1.32612 1.48546 1.86507 1.19992 1.37061 1.83406 1.23146 0.92187 0.82223 1.01828 1.21457 0.89704 0.99321 1.02600 1.18944 0.94606 0.92190 0.95477 1.21656 0.92622 0.93399 1.50178 0.91627 1.26030 1.04521 0.94802 0.94726 1.70111 1.36647 0.99215 1.51469 0.85326 0.78691 0.78853 0.77734 1.18347 1.20407 1.20417 1.23011 1.00595 0.85223 0.85322 1.67357 1.06748 1.30971 1.23468 0.91523 0.88626 0.89650 0.90497 0.90845 0.91169 0.80943 0.83113 0.91915 0.91916 0.91336 0.91352 0.98487 0.98479 0.92706 0.80532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 10.31 127.77 1.32 1.72 16 2 N -0.60 -7.70 3.37 -754.10 -2.54 -10.24 16 3 C 0.08 0.88 10.71 127.77 1.37 2.25 16 4 C 0.42 7.78 7.36 133.26 0.98 8.76 16 5 C -0.24 -3.95 9.20 22.22 0.20 -3.74 16 6 C 0.03 0.54 9.65 22.47 0.22 0.76 16 7 C -0.26 -6.95 5.89 -20.00 -0.12 -7.06 16 8 C 0.52 17.13 7.89 70.23 0.55 17.69 16 9 O -0.55 -21.03 16.20 19.78 0.32 -20.71 16 10 O -0.35 -12.24 9.49 -56.71 -0.54 -12.78 16 11 C 0.08 3.07 5.48 71.98 0.39 3.47 16 12 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 18 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.22 5.28 10.79 85.05 0.92 6.20 16 23 N -0.57 -12.87 8.81 -192.28 -1.69 -14.56 16 24 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.10 0.13 8.07 -2.39 -0.02 0.11 16 26 H 0.08 0.27 5.95 -2.39 -0.01 0.26 16 27 H 0.08 1.15 6.80 -2.39 -0.02 1.13 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.17 1.56 5.99 -2.91 -0.02 1.54 16 31 H 0.15 2.99 7.73 -2.91 -0.02 2.97 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.18 3.96 7.61 -2.91 -0.02 3.94 16 Total: -1.00 -72.24 335.82 5.74 -66.50 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.04 Total: 5.11 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.85 Total: -2.66 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.95 Total: -81.97 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.22 Total: -33.49 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.24 5.74 -66.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914963270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.488 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds