Wall clock time and date at job start Tue Mar 31 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39027 * 120.00268 * 180.02562 * 2 1 3 5 5 C 1.39121 * 119.64370 * 4.99253 * 4 2 1 6 6 C 1.39536 * 118.92429 * 179.97438 * 5 4 2 7 7 C 1.48064 * 120.88717 * 179.97438 * 6 5 4 8 8 O 1.21424 * 120.00081 * 0.02562 * 7 6 5 9 9 O 1.34672 * 120.00315 * 180.02562 * 7 6 5 10 10 C 1.45201 * 117.00212 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47330 * 180.02562 * 12 11 10 14 14 H 1.08009 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00368 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99780 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46959 * 60.00323 * 17 15 13 19 19 H 1.48503 * 109.47146 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47236 * 299.99991 * 17 15 13 21 21 C 1.40057 * 118.22785 * 0.02562 * 6 5 4 22 22 C 1.37939 * 119.17276 * 359.97438 * 21 6 5 23 23 N 1.31923 * 121.00137 * 359.74145 * 22 21 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08004 * 120.53762 * 0.02562 * 5 4 2 31 31 H 1.09003 * 109.46754 * 300.00091 * 10 9 7 32 32 H 1.09007 * 109.46798 * 59.99924 * 10 9 7 33 33 H 1.09003 * 109.47624 * 299.99680 * 11 10 9 34 34 H 1.08998 * 109.47378 * 60.00706 * 11 10 9 35 35 H 1.09003 * 109.47583 * 300.00256 * 12 11 10 36 36 H 1.09000 * 109.47401 * 60.00072 * 12 11 10 37 37 H 0.97008 * 120.00070 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.41125 * 180.02562 * 21 6 5 39 39 H 1.07996 * 119.50239 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4611 -2.4021 -0.1063 6 6 2.1740 -3.6017 -0.1059 7 6 1.4740 -4.9018 -0.2156 8 8 0.2638 -4.9339 -0.3081 9 8 2.1797 -6.0488 -0.2129 10 6 1.4276 -7.2859 -0.3244 11 6 2.3925 -8.4729 -0.3045 12 6 1.5999 -9.7764 -0.4213 13 6 2.5503 -10.9458 -0.4010 14 1 3.6134 -10.7762 -0.3140 15 6 2.0628 -12.2321 -0.4947 16 7 0.7683 -12.4386 -0.6013 17 14 3.2409 -13.6815 -0.4703 18 1 4.0028 -13.6786 0.8043 19 1 2.4716 -14.9467 -0.5836 20 1 4.1847 -13.5716 -1.6115 21 6 3.5691 -3.5431 0.0023 22 6 4.1847 -2.3128 0.1032 23 7 3.4799 -1.1977 0.0940 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3842 -2.4038 -0.1883 31 1 0.7345 -7.3663 0.5130 32 1 0.8686 -7.2881 -1.2602 33 1 3.0853 -8.3922 -1.1421 34 1 2.9518 -8.4709 0.6311 35 1 0.9074 -9.8570 0.4166 36 1 1.0403 -9.7788 -1.3567 37 1 0.4253 -13.3436 -0.6675 38 1 4.1558 -4.4500 0.0058 39 1 5.2602 -2.2615 0.1864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919154079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:47 Heat of formation + Delta-G solvation = -49.368336 kcal Electronic energy + Delta-G solvation = -20330.310706 eV Core-core repulsion = 17045.125682 eV Total energy + Delta-G solvation = -3285.185024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86385 -39.77579 -36.83832 -36.48481 -34.01956 -32.92555 -31.67217 -30.72750 -28.65538 -27.24863 -25.71304 -24.79473 -23.02690 -22.40820 -20.66150 -20.30110 -18.23261 -17.35427 -16.53928 -16.35727 -16.17666 -15.97589 -15.64430 -15.57742 -14.50208 -14.41151 -14.35054 -14.17442 -13.53714 -13.24279 -12.96951 -12.65277 -12.39976 -12.20209 -12.18496 -12.04570 -11.83697 -10.96333 -10.79613 -10.65747 -10.55902 -10.42344 -10.36139 -10.00122 -9.77676 -9.73497 -9.51481 -9.18674 -8.39037 -7.88646 -6.03954 -4.07118 0.49417 1.06840 2.47658 2.60326 2.80327 3.32399 3.36711 3.39246 3.69457 4.25234 4.41942 4.55296 4.60628 4.73587 4.89629 4.99372 5.00357 5.11208 5.28367 5.31942 5.32461 5.44719 5.48816 5.54996 5.57327 5.60255 5.96089 5.99689 6.20144 6.41270 6.52134 6.55327 6.78381 6.96138 6.98549 7.59048 7.70054 7.80638 7.81416 7.94077 8.34990 8.98834 9.57128 11.07439 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046297 B = 0.002562 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.642394 B =10926.353131 C =11493.509661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.619 5.619 3 C 0.102 3.898 4 C 0.393 3.607 5 C -0.176 4.176 6 C -0.030 4.030 7 C 0.504 3.496 8 O -0.502 6.502 9 O -0.348 6.348 10 C 0.068 3.932 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.179 4.179 22 C 0.141 3.859 23 N -0.525 5.525 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.150 0.850 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 26.724 1.277 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.334 5.334 3 C -0.041 4.041 4 C 0.159 3.841 5 C -0.201 4.201 6 C -0.039 4.039 7 C 0.347 3.653 8 O -0.390 6.390 9 O -0.264 6.264 10 C -0.004 4.004 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.202 4.202 22 C -0.016 4.016 23 N -0.243 5.243 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.163 0.837 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.544 27.472 1.288 27.620 hybrid contribution -0.087 -1.735 -0.055 1.738 sum 2.457 25.737 1.233 25.884 Atomic orbital electron populations 1.21729 0.78132 1.03056 1.01929 1.46175 1.05189 1.02854 1.79133 1.21576 0.97459 0.83678 1.01345 1.18088 0.88208 0.85641 0.92128 1.21489 1.01731 0.90158 1.06752 1.19288 0.93925 0.90482 1.00241 1.21041 0.85677 0.85072 0.73514 1.90818 1.14966 1.88232 1.45016 1.86539 1.42091 1.15221 1.82546 1.23591 0.95395 0.79259 1.02199 1.21776 0.98118 0.92662 1.02085 1.19050 0.95435 0.89159 0.97649 1.21130 0.93365 0.90825 1.50719 0.92451 1.25033 0.95156 0.99111 0.95183 1.69955 1.11954 1.21431 1.50027 0.86596 0.80837 0.81547 0.78665 1.20170 1.21274 1.20165 1.22242 0.93722 1.00531 1.03672 1.22445 0.99868 0.86260 0.93000 1.67016 1.06041 1.32529 1.18693 0.90165 0.92233 0.92178 0.93401 0.90496 0.91824 0.83719 0.91287 0.91295 0.92026 0.92029 0.96212 0.96213 0.92823 0.83185 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 9.40 59.85 0.56 1.17 16 2 N -0.62 -5.54 3.39 -189.67 -0.64 -6.18 16 3 C 0.10 0.70 10.39 59.85 0.62 1.32 16 4 C 0.39 4.47 7.37 -155.08 -1.14 3.33 16 5 C -0.18 -2.15 8.90 -38.77 -0.35 -2.49 16 6 C -0.03 -0.40 5.90 -104.70 -0.62 -1.02 16 7 C 0.50 8.11 7.92 34.76 0.28 8.39 16 8 O -0.50 -9.16 16.23 -19.21 -0.31 -9.47 16 9 O -0.35 -5.86 9.57 -40.42 -0.39 -6.24 16 10 C 0.07 1.26 5.47 37.15 0.20 1.46 16 11 C -0.11 -2.24 5.53 -26.73 -0.15 -2.38 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.18 -2.01 9.70 -39.01 -0.38 -2.39 16 22 C 0.14 1.40 11.16 -17.62 -0.20 1.20 16 23 N -0.52 -5.95 9.13 -12.49 -0.11 -6.06 16 24 H 0.08 0.32 7.79 -51.93 -0.40 -0.08 16 25 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 7.73 -51.93 -0.40 -0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.60 7.44 -51.93 -0.39 0.21 16 29 H 0.06 0.30 7.92 -51.93 -0.41 -0.11 16 30 H 0.15 1.68 6.39 -52.48 -0.34 1.34 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.15 1.53 7.71 -52.48 -0.40 1.13 16 39 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -32.67 337.95 -8.05 -40.72 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.69 Total: -3.91 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.71 Total: -4.38 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.02 Total: -38.31 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.70 Total: -15.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.67 -8.05 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919154079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.647 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds