Wall clock time and date at job start Tue Mar 31 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39027 * 120.00268 * 180.02562 * 2 1 3 5 5 C 1.39121 * 119.64370 * 4.99253 * 4 2 1 6 6 C 1.39536 * 118.92429 * 179.97438 * 5 4 2 7 7 C 1.48064 * 120.88717 * 179.97438 * 6 5 4 8 8 O 1.21424 * 120.00081 * 0.02562 * 7 6 5 9 9 O 1.34672 * 120.00315 * 180.02562 * 7 6 5 10 10 C 1.45201 * 117.00212 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47330 * 180.02562 * 12 11 10 14 14 H 1.08009 * 120.00135 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00368 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99780 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00081 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46959 * 60.00323 * 17 15 13 19 19 H 1.48503 * 109.47146 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47236 * 299.99991 * 17 15 13 21 21 C 1.40057 * 118.22785 * 0.02562 * 6 5 4 22 22 C 1.37939 * 119.17276 * 359.97438 * 21 6 5 23 23 N 1.31923 * 121.00137 * 359.74145 * 22 21 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08004 * 120.53762 * 0.02562 * 5 4 2 31 31 H 1.09003 * 109.46754 * 300.00091 * 10 9 7 32 32 H 1.09007 * 109.46798 * 59.99924 * 10 9 7 33 33 H 1.09003 * 109.47624 * 299.99680 * 11 10 9 34 34 H 1.08998 * 109.47378 * 60.00706 * 11 10 9 35 35 H 1.09003 * 109.47583 * 300.00256 * 12 11 10 36 36 H 1.09000 * 109.47401 * 60.00072 * 12 11 10 37 37 H 0.97008 * 120.00070 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.41125 * 180.02562 * 21 6 5 39 39 H 1.07996 * 119.50239 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4611 -2.4021 -0.1063 6 6 2.1740 -3.6017 -0.1059 7 6 1.4740 -4.9018 -0.2156 8 8 0.2638 -4.9339 -0.3081 9 8 2.1797 -6.0488 -0.2129 10 6 1.4276 -7.2859 -0.3244 11 6 2.3925 -8.4729 -0.3045 12 6 1.5999 -9.7764 -0.4213 13 6 2.5503 -10.9458 -0.4010 14 1 3.6134 -10.7762 -0.3140 15 6 2.0628 -12.2321 -0.4947 16 7 0.7683 -12.4386 -0.6013 17 14 3.2409 -13.6815 -0.4703 18 1 4.0028 -13.6786 0.8043 19 1 2.4716 -14.9467 -0.5836 20 1 4.1847 -13.5716 -1.6115 21 6 3.5691 -3.5431 0.0023 22 6 4.1847 -2.3128 0.1032 23 7 3.4799 -1.1977 0.0940 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3842 -2.4038 -0.1883 31 1 0.7345 -7.3663 0.5130 32 1 0.8686 -7.2881 -1.2602 33 1 3.0853 -8.3922 -1.1421 34 1 2.9518 -8.4709 0.6311 35 1 0.9074 -9.8570 0.4166 36 1 1.0403 -9.7788 -1.3567 37 1 0.4253 -13.3436 -0.6675 38 1 4.1558 -4.4500 0.0058 39 1 5.2602 -2.2615 0.1864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919154079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:47 Heat of formation + Delta-G solvation = -67.424644 kcal Electronic energy + Delta-G solvation = -20331.093686 eV Core-core repulsion = 17045.125682 eV Total energy + Delta-G solvation = -3285.968005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92696 -40.88450 -37.94851 -37.49107 -35.94864 -34.00925 -33.50505 -31.52350 -29.36616 -28.95109 -26.58436 -25.99410 -24.64654 -23.27618 -22.18676 -21.68354 -19.27463 -18.72386 -18.19659 -17.75877 -17.31253 -16.84490 -16.62184 -16.48685 -16.33068 -15.69423 -15.25468 -15.05772 -14.68895 -14.41019 -14.11112 -13.85559 -13.80891 -13.46872 -13.17889 -13.03496 -12.80535 -12.69616 -12.53802 -12.42114 -12.11112 -12.04003 -11.51215 -11.45241 -11.26970 -11.20738 -10.84338 -10.61481 -10.56171 -8.61049 -8.21183 -6.32692 -0.51509 0.23845 1.36666 1.42718 1.43070 1.45580 1.53654 1.96311 2.42008 2.81397 3.12748 3.36049 3.54631 3.84492 3.95369 3.98239 4.02041 4.12473 4.34222 4.38881 4.45972 4.49640 4.63618 4.67293 4.77808 4.79287 4.86064 4.87954 4.99338 5.06098 5.11426 5.28824 5.43190 5.49391 5.63985 5.80468 5.92423 6.19160 6.24813 6.50140 6.83059 7.00130 7.36759 8.90820 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.046297 B = 0.002562 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.642394 B =10926.353131 C =11493.509661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.620 5.620 3 C 0.100 3.900 4 C 0.387 3.613 5 C -0.186 4.186 6 C -0.048 4.048 7 C 0.505 3.495 8 O -0.530 6.530 9 O -0.344 6.344 10 C 0.077 3.923 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.265 1.265 21 C -0.181 4.181 22 C 0.151 3.849 23 N -0.533 5.533 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.160 0.840 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 28.045 1.448 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.334 5.334 3 C -0.042 4.042 4 C 0.152 3.848 5 C -0.212 4.212 6 C -0.057 4.057 7 C 0.350 3.650 8 O -0.420 6.420 9 O -0.260 6.260 10 C 0.004 3.996 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.204 4.204 22 C -0.007 4.007 23 N -0.251 5.251 24 H 0.126 0.874 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.073 0.927 38 H 0.178 0.822 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.401 28.841 1.462 29.212 hybrid contribution -0.686 -2.015 -0.103 2.131 sum 3.716 26.827 1.359 27.117 Atomic orbital electron populations 1.21905 0.76867 1.04862 1.01697 1.46503 1.06192 1.02729 1.77974 1.21706 0.97410 0.83275 1.01821 1.18291 0.88443 0.86252 0.91847 1.21501 1.01767 0.90325 1.07566 1.19233 0.94944 0.89076 1.02405 1.21576 0.85524 0.85497 0.72365 1.90799 1.16206 1.88499 1.46497 1.86514 1.41703 1.14988 1.82760 1.23252 0.94717 0.79673 1.01969 1.21464 0.97729 0.91061 1.02794 1.18935 0.95167 0.91597 0.95462 1.21598 0.94172 0.91861 1.50462 0.91547 1.26022 0.96929 1.02427 0.94626 1.70096 1.14062 1.22218 1.51033 0.85437 0.78515 0.77423 0.79299 1.19016 1.21031 1.19003 1.22394 0.92739 1.01652 1.03594 1.23019 1.01368 0.85266 0.91019 1.67148 1.06007 1.33064 1.18928 0.87359 0.92522 0.92380 0.93030 0.91435 0.89257 0.83912 0.91622 0.91628 0.91207 0.91217 0.98480 0.98478 0.92697 0.82223 0.78236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 9.40 127.77 1.20 2.21 16 2 N -0.62 -10.14 3.39 -754.00 -2.56 -12.70 16 3 C 0.10 1.16 10.39 127.77 1.33 2.49 16 4 C 0.39 8.35 7.37 133.08 0.98 9.33 16 5 C -0.19 -4.49 8.90 22.80 0.20 -4.29 16 6 C -0.05 -1.25 5.90 -19.92 -0.12 -1.37 16 7 C 0.51 16.38 7.92 70.43 0.56 16.93 16 8 O -0.53 -19.80 16.23 20.08 0.33 -19.47 16 9 O -0.34 -11.47 9.57 -55.81 -0.53 -12.01 16 10 C 0.08 2.87 5.47 71.98 0.39 3.26 16 11 C -0.09 -3.81 5.53 30.59 0.17 -3.64 16 12 C 0.03 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 17 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C -0.18 -3.79 9.70 22.64 0.22 -3.58 16 22 C 0.15 2.64 11.16 84.61 0.94 3.59 16 23 N -0.53 -11.11 9.13 -193.42 -1.77 -12.88 16 24 H 0.11 0.60 7.79 -2.39 -0.02 0.58 16 25 H 0.06 0.68 8.11 -2.39 -0.02 0.67 16 26 H 0.06 0.69 7.73 -2.38 -0.02 0.67 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.93 7.44 -2.39 -0.02 0.91 16 29 H 0.09 0.57 7.92 -2.38 -0.02 0.56 16 30 H 0.14 3.38 6.39 -2.91 -0.02 3.36 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 38 H 0.16 2.97 7.71 -2.91 -0.02 2.95 16 39 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.38 337.95 5.54 -64.84 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.03 Total: 6.47 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.72 Total: -3.57 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -4.04 Total: -82.16 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.21 Total: -31.48 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.38 5.54 -64.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919154079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.581 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds