Wall clock time and date at job start Tue Mar 31 2020 00:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47128 * 2 1 4 4 C 1.36895 * 120.00393 * 278.65977 * 3 2 1 5 5 H 1.07997 * 120.00414 * 236.93131 * 4 3 2 6 6 C 1.39032 * 120.00080 * 56.92881 * 4 3 2 7 7 N 1.31388 * 119.99630 * 44.14403 * 6 4 3 8 8 Si 1.86799 * 120.00343 * 224.14145 * 6 4 3 9 9 H 1.48497 * 109.46776 * 59.99916 * 8 6 4 10 10 H 1.48496 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47056 * 300.00308 * 8 6 4 12 12 C 1.34772 * 119.99594 * 98.66017 * 3 2 1 13 13 O 1.21623 * 120.00134 * 184.60756 * 12 3 2 14 14 C 1.47419 * 119.99972 * 4.60718 * 12 3 2 15 15 C 1.40044 * 120.60624 * 312.87500 * 14 12 3 16 16 C 1.38320 * 118.34698 * 179.70927 * 15 14 12 17 17 C 1.38373 * 119.46271 * 0.53850 * 16 15 14 18 18 C 1.50700 * 119.40256 * 179.72847 * 17 16 15 19 19 C 1.52998 * 109.47260 * 84.72540 * 18 17 16 20 20 C 1.52998 * 109.47061 * 324.72694 * 18 17 16 21 21 N 1.31896 * 121.19695 * 359.44438 * 17 16 15 22 22 C 1.32215 * 121.80575 * 0.28544 * 21 17 16 23 23 O 1.35438 * 119.80171 * 179.97438 * 22 21 17 24 24 H 1.08995 * 109.47206 * 200.14099 * 1 2 3 25 25 H 1.08997 * 109.47242 * 320.14650 * 1 2 3 26 26 H 1.09007 * 109.47440 * 80.14181 * 1 2 3 27 27 H 1.09008 * 109.46947 * 240.00300 * 2 1 3 28 28 H 1.08994 * 109.47034 * 120.00719 * 2 1 3 29 29 H 0.96996 * 119.99505 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.82476 * 0.02562 * 15 14 12 31 31 H 1.07995 * 120.27447 * 180.28185 * 16 15 14 32 32 H 1.08997 * 109.47232 * 204.72483 * 18 17 16 33 33 H 1.09008 * 109.47381 * 300.00223 * 19 18 17 34 34 H 1.09000 * 109.47271 * 59.99994 * 19 18 17 35 35 H 1.08999 * 109.47398 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47458 * 60.00057 * 20 18 17 37 37 H 1.08996 * 109.47143 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.47100 * 300.00313 * 20 18 17 39 39 H 0.96697 * 113.99730 * 90.00126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0782 2.0861 -1.1720 5 1 3.0159 2.5098 -1.5001 6 6 0.9319 2.2567 -1.9400 7 7 -0.2038 2.5776 -1.3627 8 14 1.0065 2.0296 -3.7926 9 1 1.4446 0.6453 -4.1043 10 1 -0.3391 2.2653 -4.3748 11 1 1.9733 2.9968 -4.3714 12 6 2.4086 1.9579 1.1539 13 8 2.7345 3.1296 1.1684 14 6 2.4406 1.1685 2.3985 15 6 1.3560 0.3583 2.7571 16 6 1.4383 -0.3671 3.9319 17 6 2.5730 -0.2645 4.7171 18 6 2.6586 -1.0507 5.9999 19 6 3.1593 -2.4648 5.6989 20 6 1.2733 -1.1268 6.6449 21 7 3.5833 0.5048 4.3606 22 6 3.5588 1.2149 3.2455 23 8 4.6189 1.9919 2.9189 24 1 -0.3633 -0.9648 0.3538 25 1 -0.3633 0.7889 0.6585 26 1 -0.3634 0.1760 -1.0125 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 -1.0036 2.6962 -1.8985 30 1 0.4793 0.2975 2.1293 31 1 0.6219 -1.0053 4.2359 32 1 3.3507 -0.5579 6.6826 33 1 2.4672 -2.9577 5.0161 34 1 4.1462 -2.4107 5.2394 35 1 3.2208 -3.0336 6.6267 36 1 0.5811 -1.6197 5.9621 37 1 1.3353 -1.6951 7.5729 38 1 0.9165 -0.1193 6.8593 39 1 5.2875 1.5410 2.3853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930621081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:09 Heat of formation + Delta-G solvation = -54.943353 kcal Electronic energy + Delta-G solvation = -22308.009618 eV Core-core repulsion = 19022.582843 eV Total energy + Delta-G solvation = -3285.426775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.41 seconds Orbital eigenvalues (eV) -41.94797 -39.98720 -38.57919 -36.87942 -35.97662 -34.35420 -33.26244 -31.31235 -30.69461 -27.95792 -27.27211 -25.36678 -24.32212 -23.92688 -21.94222 -21.23375 -19.40327 -18.93360 -17.95200 -17.90995 -17.29021 -16.78930 -16.14629 -15.89038 -15.55718 -15.22356 -15.10542 -14.82306 -14.51993 -13.87626 -13.71514 -13.64500 -13.50806 -13.25864 -13.10935 -12.84154 -12.80077 -12.73845 -12.32612 -12.26745 -12.18676 -12.02293 -11.90264 -11.72694 -10.90974 -10.72132 -10.58428 -10.17355 -9.78092 -9.30917 -8.42136 -6.12359 -0.26001 0.10244 1.38008 1.44140 1.53529 2.04650 2.29720 2.42518 2.64810 2.79483 3.01211 3.47153 3.69350 3.91539 4.03649 4.15774 4.19903 4.26896 4.32896 4.47471 4.58630 4.64529 4.69347 4.88698 4.91370 4.94723 4.99302 5.03762 5.10666 5.15638 5.25533 5.42585 5.47257 5.51068 5.52927 5.62404 6.30237 6.50916 6.65315 6.84192 7.21319 7.36581 8.11517 8.54653 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.005117 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.346805 B = 5470.684973 C = 5998.307597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.099 3.901 3 N -0.441 5.441 4 C -0.401 4.401 5 H 0.051 0.949 6 C 0.052 3.948 7 N -0.834 5.834 8 Si 0.954 3.046 9 H -0.255 1.255 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.498 3.502 13 O -0.610 6.610 14 C -0.202 4.202 15 C -0.041 4.041 16 C -0.171 4.171 17 C 0.163 3.837 18 C -0.045 4.045 19 C -0.137 4.137 20 C -0.146 4.146 21 N -0.520 5.520 22 C 0.333 3.667 23 O -0.486 6.486 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.275 0.725 30 H 0.156 0.844 31 H 0.185 0.815 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -16.156 11.030 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 N -0.160 5.160 4 C -0.527 4.527 5 H 0.069 0.931 6 C -0.160 4.160 7 N -0.464 5.464 8 Si 0.776 3.224 9 H -0.179 1.179 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.288 3.712 13 O -0.495 6.495 14 C -0.209 4.209 15 C -0.067 4.067 16 C -0.190 4.190 17 C 0.024 3.976 18 C -0.065 4.065 19 C -0.194 4.194 20 C -0.203 4.203 21 N -0.240 5.240 22 C 0.154 3.846 23 O -0.294 6.294 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.202 0.798 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.323 -15.008 11.769 19.075 hybrid contribution -0.172 0.634 -1.968 2.075 sum -0.495 -14.374 9.800 17.404 Atomic orbital electron populations 1.22109 0.95327 1.01063 1.01908 1.21914 0.95300 0.83138 1.02040 1.43555 1.56903 1.11097 1.04461 1.18721 0.94554 1.41409 0.98018 0.93083 1.26154 0.94378 0.91590 1.03926 1.70457 1.02506 1.33349 1.40076 0.85669 0.77660 0.79997 0.79032 1.17890 1.20031 1.20240 1.18981 0.82030 0.86265 0.83973 1.90602 1.54027 1.18666 1.86210 1.21355 0.98895 1.02678 0.97975 1.22309 0.96883 0.90934 0.96552 1.22265 1.00524 1.02120 0.94072 1.21835 0.87887 0.91205 0.96718 1.20229 1.00274 0.95554 0.90414 1.21794 1.00851 0.93553 1.03221 1.21955 0.94102 1.02455 1.01782 1.67052 1.32046 1.08512 1.16355 1.19221 0.87879 0.88779 0.88696 1.84723 1.32760 1.37836 1.74118 0.89437 0.94064 0.93882 0.91114 0.90026 0.91511 0.82626 0.79785 0.89947 0.91299 0.93790 0.89585 0.90429 0.89655 0.93217 0.72958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 7.37 71.98 0.53 -4.80 16 2 C 0.10 3.89 5.48 86.38 0.47 4.36 16 3 N -0.44 -22.67 2.54 -639.26 -1.63 -24.29 16 4 C -0.40 -22.94 8.37 84.09 0.70 -22.24 16 5 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 6 C 0.05 2.73 4.09 84.95 0.35 3.08 16 7 N -0.83 -45.21 12.10 21.68 0.26 -44.95 16 8 Si 0.95 40.39 29.69 68.60 2.04 42.43 16 9 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 10 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 C 0.50 26.81 6.96 86.66 0.60 27.41 16 13 O -0.61 -39.41 16.44 6.06 0.10 -39.31 16 14 C -0.20 -8.62 5.02 -19.91 -0.10 -8.72 16 15 C -0.04 -1.37 7.58 22.73 0.17 -1.19 16 16 C -0.17 -4.23 9.15 22.32 0.20 -4.03 16 17 C 0.16 4.35 5.79 42.58 0.25 4.59 16 18 C -0.05 -0.83 3.22 -11.54 -0.04 -0.86 16 19 C -0.14 -1.94 9.18 71.98 0.66 -1.28 16 20 C -0.15 -1.86 8.62 71.98 0.62 -1.24 16 21 N -0.52 -18.02 10.28 -295.99 -3.04 -21.06 16 22 C 0.33 13.48 7.75 85.15 0.66 14.14 16 23 O -0.49 -20.16 12.57 -77.17 -0.97 -21.13 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 25 H 0.04 1.70 6.82 -2.39 -0.02 1.69 16 26 H 0.04 1.73 6.73 -2.38 -0.02 1.71 16 27 H 0.07 2.67 8.11 -2.38 -0.02 2.65 16 28 H 0.08 2.75 5.17 -2.39 -0.01 2.74 16 29 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.16 5.03 4.28 -2.91 -0.01 5.01 16 31 H 0.19 2.86 6.29 -2.91 -0.02 2.85 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.77 6.47 -2.38 -0.02 0.75 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.41 12.91 9.06 -74.06 -0.67 12.23 16 Total: -1.00 -78.91 319.80 2.26 -76.65 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.41 Total: 22.44 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.09 Total: 9.22 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.41 Total: -90.30 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -0.87 Total: -60.43 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.04 Total: 42.43 kcal Total: -78.91 2.26 -76.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930621081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.707 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.41 seconds