Wall clock time and date at job start Mon Mar 30 2020 23:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47084 * 239.99983 * 2 1 3 5 5 O 1.42898 * 109.47047 * 304.99846 * 4 2 1 6 6 N 1.46504 * 109.46567 * 119.99887 * 2 1 3 7 7 C 1.34774 * 120.00177 * 274.99282 * 6 2 1 8 8 O 1.21592 * 119.99663 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00305 * 180.02562 * 7 6 2 10 10 C 1.39943 * 120.00415 * 174.69332 * 9 7 6 11 11 C 1.38864 * 120.06608 * 326.56911 * 10 9 7 12 12 C 1.38117 * 119.92996 * 179.77030 * 11 10 9 13 13 C 1.38281 * 120.06553 * 0.50343 * 12 11 10 14 14 C 1.50702 * 119.93163 * 179.72303 * 13 12 11 15 15 C 1.50693 * 109.47348 * 270.02905 * 14 13 12 16 16 H 1.08001 * 120.00047 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99870 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00177 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46915 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47046 * 119.99659 * 19 17 15 22 22 H 1.48498 * 109.47235 * 239.99432 * 19 17 15 23 23 C 1.38279 * 120.14387 * 359.74921 * 13 12 11 24 24 C 1.38116 * 120.06602 * 359.97438 * 23 13 12 25 25 H 1.08994 * 109.46668 * 59.99950 * 1 2 3 26 26 H 1.08995 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46938 * 300.00115 * 1 2 3 28 28 H 1.08995 * 109.46939 * 64.99941 * 4 2 1 29 29 H 1.08997 * 109.47039 * 185.00401 * 4 2 1 30 30 H 0.96699 * 113.99978 * 179.97438 * 5 4 2 31 31 H 0.96997 * 119.99810 * 95.28530 * 6 2 1 32 32 H 0.97005 * 120.00069 * 354.69503 * 9 7 6 33 33 H 1.08004 * 120.04011 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.97179 * 180.25191 * 12 11 10 35 35 H 1.09006 * 109.46586 * 30.02536 * 14 13 12 36 36 H 1.08995 * 109.47330 * 150.02329 * 14 13 12 37 37 H 0.96999 * 119.99973 * 180.02562 * 18 17 15 38 38 H 1.08005 * 119.96875 * 179.97438 * 23 13 12 39 39 H 1.08004 * 120.03417 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1963 7 6 2.1471 -0.0183 2.3572 8 8 1.8576 1.1614 2.4118 9 7 2.5967 -0.6534 3.4575 10 6 2.8361 0.0674 4.6329 11 6 3.2921 1.3773 4.5650 12 6 3.5229 2.0876 5.7268 13 6 3.3104 1.4923 6.9567 14 6 3.5693 2.2682 8.2224 15 6 4.9992 2.0654 8.6524 16 1 5.6550 1.4371 8.0679 17 6 5.4702 2.6810 9.7927 18 7 4.6715 3.4456 10.5048 19 14 7.2426 2.4290 10.3262 20 1 7.9268 1.5309 9.3617 21 1 7.9396 3.7398 10.3628 22 1 7.2702 1.8158 11.6783 23 6 2.8615 0.1864 7.0277 24 6 2.6233 -0.5274 5.8695 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7517 -0.1583 -2.1369 29 1 3.1263 -0.7995 -1.2056 30 1 1.7500 -2.5461 -2.0781 31 1 2.2529 -1.6308 1.1517 32 1 2.7544 -1.6103 3.4348 33 1 3.4628 1.8413 3.6048 34 1 3.8736 3.1078 5.6748 35 1 3.3911 3.3282 8.0416 36 1 2.9003 1.9161 9.0076 37 1 5.0030 3.8791 11.3068 38 1 2.6968 -0.2760 7.9898 39 1 2.2730 -1.5475 5.9256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932576892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:52 Heat of formation + Delta-G solvation = -62.487933 kcal Electronic energy + Delta-G solvation = -20703.076235 eV Core-core repulsion = 17417.322303 eV Total energy + Delta-G solvation = -3285.753933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52238 -38.61452 -37.59948 -35.16457 -34.60175 -33.00475 -31.29353 -30.22946 -29.86601 -26.83881 -26.42883 -23.46024 -22.33560 -21.77201 -20.74748 -20.10175 -18.62547 -17.82754 -17.28136 -16.27115 -15.95510 -15.50865 -14.89806 -14.82518 -14.64765 -14.16926 -13.91792 -13.75012 -13.28591 -12.93260 -12.74951 -12.70195 -12.47839 -11.97648 -11.77852 -11.34222 -11.28212 -11.23268 -10.79643 -10.57699 -10.55287 -10.34612 -10.10793 -9.84489 -9.42696 -9.26352 -9.16803 -8.38861 -8.21317 -7.28060 -5.99780 -4.03580 2.02012 2.14110 2.59996 3.22966 3.31794 3.39303 3.44456 3.76041 4.14292 4.42782 4.48481 4.63305 4.68822 4.91385 5.16697 5.26433 5.34168 5.47971 5.51218 5.63786 5.74410 6.00682 6.08804 6.12217 6.16624 6.27307 6.36407 6.64284 6.73418 7.01223 7.09714 7.13468 7.24034 7.28150 7.57465 7.79367 7.92799 7.95643 7.96399 8.37487 8.57260 9.02174 9.59929 11.09810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.002869 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.327912 B = 9757.981982 C = 9845.879192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.100 0.900 4 C 0.067 3.933 5 O -0.570 6.570 6 N -0.739 5.739 7 C 0.701 3.299 8 O -0.573 6.573 9 N -0.682 5.682 10 C 0.125 3.875 11 C -0.117 4.117 12 C -0.107 4.107 13 C -0.045 4.045 14 C 0.048 3.952 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.107 4.107 24 C -0.146 4.146 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.381 0.619 31 H 0.399 0.601 32 H 0.401 0.599 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -11.754 -23.174 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.118 0.882 4 C -0.011 4.011 5 O -0.376 6.376 6 N -0.395 5.395 7 C 0.401 3.599 8 O -0.450 6.450 9 N -0.329 5.329 10 C 0.032 3.968 11 C -0.138 4.138 12 C -0.126 4.126 13 C -0.046 4.046 14 C 0.011 3.989 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.126 4.126 24 C -0.167 4.167 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.233 0.767 32 H 0.235 0.765 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.025 -10.350 -22.483 25.474 hybrid contribution 1.434 -1.231 -0.222 1.903 sum -4.590 -11.581 -22.706 25.898 Atomic orbital electron populations 1.22092 0.94784 1.02710 1.02308 1.20899 0.94997 0.96479 0.81893 0.88206 1.22512 0.96943 0.84256 0.97412 1.86487 1.73071 1.27256 1.50755 1.45124 1.71779 1.14004 1.08607 1.15959 0.78257 0.85316 0.80328 1.90955 1.55771 1.14170 1.84067 1.42489 1.69281 1.11205 1.09912 1.17288 1.02553 0.93059 0.83946 1.20999 1.00102 0.93617 0.99036 1.20984 1.00131 1.00052 0.91408 1.20683 0.92854 0.94167 0.96884 1.18347 0.97145 0.94837 0.88593 1.21117 0.95562 1.29240 1.08785 0.92418 1.25023 0.97745 0.95196 0.96488 1.69970 1.35400 1.31477 1.16533 0.86491 0.84867 0.77956 0.78462 1.19689 1.20980 1.20999 1.20858 1.00166 0.94452 0.97119 1.20705 1.04705 1.00077 0.91215 0.91977 0.91678 0.91936 0.91946 0.92844 0.77209 0.76701 0.76493 0.85813 0.86165 0.95322 0.95346 0.92943 0.86062 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.29 37.16 0.35 -1.16 16 2 C 0.16 1.46 2.98 -67.92 -0.20 1.25 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.62 16 4 C 0.07 0.38 6.79 37.16 0.25 0.63 16 5 O -0.57 -3.21 12.51 -35.23 -0.44 -3.65 16 6 N -0.74 -7.40 5.07 -58.67 -0.30 -7.70 16 7 C 0.70 9.91 8.27 -86.93 -0.72 9.19 16 8 O -0.57 -10.43 13.70 5.28 0.07 -10.35 16 9 N -0.68 -9.14 5.35 -14.23 -0.08 -9.22 16 10 C 0.12 2.14 6.28 -83.69 -0.53 1.62 16 11 C -0.12 -2.26 8.65 -39.39 -0.34 -2.60 16 12 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 13 C -0.05 -1.02 5.07 -104.59 -0.53 -1.55 16 14 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 15 C -0.51 -14.43 9.09 -34.44 -0.31 -14.75 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.11 -2.13 9.69 -39.61 -0.38 -2.51 16 24 C -0.15 -2.48 9.96 -39.40 -0.39 -2.88 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.38 0.52 9.12 45.56 0.42 0.94 16 31 H 0.40 3.10 8.40 -40.82 -0.34 2.76 16 32 H 0.40 3.89 8.83 -40.82 -0.36 3.53 16 33 H 0.12 2.37 6.43 -52.48 -0.34 2.04 16 34 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 39 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -34.54 333.96 -8.18 -42.72 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.75 Total: 5.24 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.44 Total: -12.76 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.36 Total: -42.94 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.37 Total: -14.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.54 -8.18 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.764 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds