Wall clock time and date at job start Mon Mar 30 2020 23:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47304 * 2 1 4 4 C 1.53002 * 109.47084 * 239.99983 * 2 1 3 5 5 O 1.42898 * 109.47047 * 304.99846 * 4 2 1 6 6 N 1.46504 * 109.46567 * 119.99887 * 2 1 3 7 7 C 1.34774 * 120.00177 * 274.99282 * 6 2 1 8 8 O 1.21592 * 119.99663 * 0.02562 * 7 6 2 9 9 N 1.34771 * 120.00305 * 180.02562 * 7 6 2 10 10 C 1.39943 * 120.00415 * 174.69332 * 9 7 6 11 11 C 1.38864 * 120.06608 * 326.56911 * 10 9 7 12 12 C 1.38117 * 119.92996 * 179.77030 * 11 10 9 13 13 C 1.38281 * 120.06553 * 0.50343 * 12 11 10 14 14 C 1.50702 * 119.93163 * 179.72303 * 13 12 11 15 15 C 1.50693 * 109.47348 * 270.02905 * 14 13 12 16 16 H 1.08001 * 120.00047 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99870 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00177 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46915 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47046 * 119.99659 * 19 17 15 22 22 H 1.48498 * 109.47235 * 239.99432 * 19 17 15 23 23 C 1.38279 * 120.14387 * 359.74921 * 13 12 11 24 24 C 1.38116 * 120.06602 * 359.97438 * 23 13 12 25 25 H 1.08994 * 109.46668 * 59.99950 * 1 2 3 26 26 H 1.08995 * 109.46780 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46938 * 300.00115 * 1 2 3 28 28 H 1.08995 * 109.46939 * 64.99941 * 4 2 1 29 29 H 1.08997 * 109.47039 * 185.00401 * 4 2 1 30 30 H 0.96699 * 113.99978 * 179.97438 * 5 4 2 31 31 H 0.96997 * 119.99810 * 95.28530 * 6 2 1 32 32 H 0.97005 * 120.00069 * 354.69503 * 9 7 6 33 33 H 1.08004 * 120.04011 * 359.97438 * 11 10 9 34 34 H 1.07996 * 119.97179 * 180.25191 * 12 11 10 35 35 H 1.09006 * 109.46586 * 30.02536 * 14 13 12 36 36 H 1.08995 * 109.47330 * 150.02329 * 14 13 12 37 37 H 0.96999 * 119.99973 * 180.02562 * 18 17 15 38 38 H 1.08005 * 119.96875 * 179.97438 * 23 13 12 39 39 H 1.08004 * 120.03417 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1963 7 6 2.1471 -0.0183 2.3572 8 8 1.8576 1.1614 2.4118 9 7 2.5967 -0.6534 3.4575 10 6 2.8361 0.0674 4.6329 11 6 3.2921 1.3773 4.5650 12 6 3.5229 2.0876 5.7268 13 6 3.3104 1.4923 6.9567 14 6 3.5693 2.2682 8.2224 15 6 4.9992 2.0654 8.6524 16 1 5.6550 1.4371 8.0679 17 6 5.4702 2.6810 9.7927 18 7 4.6715 3.4456 10.5048 19 14 7.2426 2.4290 10.3262 20 1 7.9268 1.5309 9.3617 21 1 7.9396 3.7398 10.3628 22 1 7.2702 1.8158 11.6783 23 6 2.8615 0.1864 7.0277 24 6 2.6233 -0.5274 5.8695 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7517 -0.1583 -2.1369 29 1 3.1263 -0.7995 -1.2056 30 1 1.7500 -2.5461 -2.0781 31 1 2.2529 -1.6308 1.1517 32 1 2.7544 -1.6103 3.4348 33 1 3.4628 1.8413 3.6048 34 1 3.8736 3.1078 5.6748 35 1 3.3911 3.3282 8.0416 36 1 2.9003 1.9161 9.0076 37 1 5.0030 3.8791 11.3068 38 1 2.6968 -0.2760 7.9898 39 1 2.2730 -1.5475 5.9256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932576892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:51 Heat of formation + Delta-G solvation = -88.563957 kcal Electronic energy + Delta-G solvation = -20704.206976 eV Core-core repulsion = 17417.322303 eV Total energy + Delta-G solvation = -3286.884674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68937 -39.90609 -38.35059 -36.32818 -35.65385 -34.96808 -32.60280 -31.75237 -31.24571 -28.29592 -27.35156 -25.23822 -23.85598 -22.97836 -21.69990 -21.56875 -19.66212 -18.56375 -18.46415 -18.29313 -16.99283 -16.65121 -16.50098 -15.97683 -15.84492 -15.48279 -15.07518 -14.63348 -14.52984 -14.51071 -14.24506 -13.88261 -13.66063 -13.36355 -13.25567 -13.08580 -12.62298 -12.47298 -12.43351 -12.05467 -11.94384 -11.65416 -11.54075 -11.27251 -10.93893 -10.87196 -10.59599 -10.16278 -9.74291 -8.80822 -8.16635 -6.31610 0.50947 0.59575 1.40655 1.41084 1.54922 1.57591 2.06783 2.41588 3.04220 3.12213 3.16746 3.40557 3.89375 4.06984 4.13756 4.17475 4.40323 4.43178 4.60559 4.61481 4.65226 4.67499 4.75071 4.84221 4.97565 5.14057 5.31374 5.32991 5.35102 5.43801 5.51578 5.52171 5.64863 5.77657 5.98955 6.10841 6.14892 6.28283 6.81428 6.94017 7.00565 7.36797 7.49694 8.91369 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.002869 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.327912 B = 9757.981982 C = 9845.879192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.085 0.915 4 C 0.078 3.922 5 O -0.585 6.585 6 N -0.718 5.718 7 C 0.697 3.303 8 O -0.617 6.617 9 N -0.669 5.669 10 C 0.140 3.860 11 C -0.124 4.124 12 C -0.119 4.119 13 C -0.077 4.077 14 C 0.057 3.943 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.112 4.112 24 C -0.131 4.131 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.401 0.599 31 H 0.413 0.587 32 H 0.423 0.577 33 H 0.123 0.877 34 H 0.110 0.890 35 H -0.002 1.002 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.127 0.873 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -14.537 -25.231 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.103 0.897 4 C 0.000 4.000 5 O -0.394 6.394 6 N -0.375 5.375 7 C 0.397 3.603 8 O -0.496 6.496 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.078 4.078 14 C 0.020 3.980 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.130 4.130 24 C -0.151 4.151 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.251 0.749 31 H 0.250 0.750 32 H 0.261 0.739 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.017 0.983 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.145 0.855 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.323 -13.213 -24.604 28.430 hybrid contribution 1.118 -0.417 0.273 1.224 sum -4.205 -13.630 -24.331 28.204 Atomic orbital electron populations 1.22023 0.95093 1.02447 1.01673 1.21091 0.94774 0.96476 0.82822 0.89703 1.22366 0.97251 0.84448 0.95977 1.86427 1.73391 1.27268 1.52288 1.45023 1.70366 1.14554 1.07540 1.16165 0.77999 0.84906 0.81188 1.90939 1.57598 1.16307 1.84789 1.42293 1.68817 1.12089 1.08596 1.17351 1.00240 0.92375 0.85542 1.20997 1.00630 0.94775 0.98036 1.20904 1.01034 0.99988 0.91833 1.20382 0.96412 0.95551 0.95423 1.18088 0.96138 0.93619 0.90136 1.21419 0.96531 1.29275 1.09080 0.92596 1.25967 1.02536 0.94685 0.96447 1.70097 1.37664 1.32369 1.17086 0.85356 0.79017 0.78151 0.78277 1.18794 1.20359 1.20022 1.20962 0.99849 0.93480 0.98729 1.20992 1.02852 1.01606 0.89665 0.90238 0.91598 0.94991 0.89994 0.91836 0.74882 0.74978 0.73878 0.85941 0.87235 0.98330 0.97520 0.92604 0.85521 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.29 71.98 0.67 -2.00 16 2 C 0.15 2.46 2.98 44.99 0.13 2.60 16 3 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 4 C 0.08 0.64 6.79 71.98 0.49 1.13 16 5 O -0.58 -4.56 12.51 -148.98 -1.86 -6.42 16 6 N -0.72 -12.75 5.07 -457.80 -2.32 -15.07 16 7 C 0.70 18.53 8.27 179.06 1.48 20.01 16 8 O -0.62 -22.27 13.70 -4.01 -0.05 -22.33 16 9 N -0.67 -16.10 5.35 -317.19 -1.70 -17.79 16 10 C 0.14 4.54 6.28 38.14 0.24 4.78 16 11 C -0.12 -4.79 8.65 22.39 0.19 -4.59 16 12 C -0.12 -5.21 9.69 22.25 0.22 -4.99 16 13 C -0.08 -3.58 5.07 -19.84 -0.10 -3.68 16 14 C 0.06 3.18 5.10 29.10 0.15 3.33 16 15 C -0.53 -30.71 9.09 25.60 0.23 -30.47 16 16 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 19 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C -0.11 -4.38 9.69 22.25 0.22 -4.16 16 24 C -0.13 -4.10 9.96 22.39 0.22 -3.88 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.13 7.56 -2.39 -0.02 1.11 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.40 -0.35 9.12 -74.06 -0.68 -1.02 16 31 H 0.41 5.06 8.40 -92.71 -0.78 4.28 16 32 H 0.42 6.50 8.83 -92.70 -0.82 5.68 16 33 H 0.12 4.76 6.43 -2.91 -0.02 4.74 16 34 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 36 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -77.49 333.96 -0.21 -77.70 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -1.19 Total: 15.36 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.60 Total: -21.39 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.73 Total: -89.92 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -1.92 Total: -28.75 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.49 -0.21 -77.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.867 kcal (2) G-P(sol) polarization free energy of solvation -77.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds