Wall clock time and date at job start Tue Mar 31 2020 00:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47061 * 2 1 4 4 C 1.34779 * 119.99845 * 274.85961 * 3 2 1 5 5 O 1.21691 * 119.99430 * 183.11295 * 4 3 2 6 6 C 1.46655 * 120.00192 * 3.10618 * 4 3 2 7 7 C 1.36544 * 125.98473 * 185.55927 * 6 4 3 8 8 C 1.40363 * 106.70705 * 179.97438 * 7 6 4 9 9 C 1.35138 * 107.11469 * 359.97438 * 8 7 6 10 10 C 1.50701 * 125.61647 * 180.02562 * 9 8 7 11 11 O 1.33936 * 108.76501 * 359.75597 * 9 8 7 12 12 C 1.46502 * 119.99681 * 94.85543 * 3 2 1 13 13 C 1.53491 * 114.20558 * 231.71638 * 12 3 2 14 14 N 1.47070 * 87.98574 * 220.15461 * 13 12 3 15 15 C 1.36935 * 136.05548 * 207.09555 * 14 13 12 16 16 H 1.08002 * 120.00515 * 354.69272 * 15 14 13 17 17 C 1.38815 * 120.00155 * 174.70026 * 15 14 13 18 18 N 1.31613 * 120.00401 * 183.81027 * 17 15 14 19 19 Si 1.86799 * 119.99649 * 3.80955 * 17 15 14 20 20 H 1.48504 * 109.46972 * 174.25532 * 19 17 15 21 21 H 1.48497 * 109.47282 * 294.25384 * 19 17 15 22 22 H 1.48500 * 109.47108 * 54.25559 * 19 17 15 23 23 C 1.47056 * 87.88579 * 27.34174 * 14 13 12 24 24 H 1.09003 * 109.46948 * 299.99683 * 1 2 3 25 25 H 1.08998 * 109.47237 * 59.99631 * 1 2 3 26 26 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46948 * 240.00317 * 2 1 3 28 28 H 1.08998 * 109.47237 * 120.00369 * 2 1 3 29 29 H 1.08000 * 126.64817 * 0.02562 * 7 6 4 30 30 H 1.08004 * 126.44780 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.46531 * 90.00737 * 10 9 8 32 32 H 1.09005 * 109.46801 * 210.00373 * 10 9 8 33 33 H 1.08998 * 109.47514 * 330.00320 * 10 9 8 34 34 H 1.08996 * 113.28258 * 4.78723 * 12 3 2 35 35 H 1.08996 * 113.46907 * 105.37404 * 13 12 3 36 36 H 1.09004 * 113.47256 * 334.92954 * 13 12 3 37 37 H 0.97009 * 120.00099 * 5.00952 * 18 17 15 38 38 H 1.08997 * 113.46722 * 87.44033 * 23 14 13 39 39 H 1.08999 * 113.47307 * 217.88149 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0495 -1.1630 5 8 2.6087 3.1766 -1.1686 6 6 1.7399 1.4184 -2.4218 7 6 1.9154 1.9359 -3.6731 8 6 1.3779 1.0036 -4.5743 9 6 0.9044 -0.0293 -3.8428 10 6 0.2388 -1.2634 -4.3950 11 8 1.1295 0.2218 -2.5466 12 6 2.3638 2.0360 1.2642 13 6 1.6956 3.4027 1.4682 14 7 2.9650 3.8804 2.0368 15 6 3.3428 4.8415 2.9361 16 1 2.6074 5.5202 3.3421 17 6 4.6713 4.9437 3.3257 18 7 5.0220 5.8172 4.2455 19 14 5.9611 3.8411 2.5445 20 1 7.3087 4.2381 3.0257 21 1 5.6978 2.4286 2.9196 22 1 5.9021 3.9802 1.0672 23 6 3.6505 2.8760 1.2099 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3788 2.8793 -3.9214 30 1 1.3491 1.0942 -5.6502 31 1 0.9928 -2.0255 -4.5921 32 1 -0.4810 -1.6433 -3.6699 33 1 -0.2769 -1.0141 -5.3224 34 1 2.2956 1.3721 2.1260 35 1 0.8777 3.3828 2.1884 36 1 1.4246 3.8971 0.5353 37 1 4.3439 6.3385 4.7031 38 1 3.8948 3.2313 0.2088 39 1 4.4981 2.4072 1.7098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949627949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:36 Heat of formation + Delta-G solvation = 62.839034 kcal Electronic energy + Delta-G solvation = -22336.196201 eV Core-core repulsion = 19055.876853 eV Total energy + Delta-G solvation = -3280.319348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.86337 -40.20495 -37.32484 -35.71365 -33.35874 -32.36056 -32.04806 -30.30561 -28.23489 -26.88048 -25.22915 -23.86385 -23.17151 -21.82130 -21.32362 -20.12669 -19.32591 -17.54948 -17.17464 -16.58406 -16.00211 -15.91586 -15.09889 -14.96340 -14.32505 -14.02414 -13.55997 -13.50508 -13.31406 -13.21011 -13.09783 -13.02461 -12.88717 -12.48210 -12.17332 -12.00350 -11.62259 -11.47181 -11.15041 -11.01833 -10.62502 -10.25392 -10.08970 -9.73184 -9.23022 -9.00806 -8.80209 -8.64318 -8.24073 -6.99304 -6.22140 -3.12715 1.00812 2.20722 2.49224 3.08831 3.25770 3.46762 3.57708 3.75150 4.32603 4.61085 4.68716 4.78280 4.88311 4.97149 5.03847 5.06339 5.07597 5.29454 5.32862 5.38329 5.47522 5.51317 5.61771 5.68645 5.70463 5.75270 5.85001 6.06204 6.19526 6.25345 6.34724 6.40653 6.43126 6.63169 6.80566 7.18038 7.24909 7.51012 8.23061 8.31866 9.06920 9.59273 10.46858 11.30030 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.004751 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.991097 B = 5892.220865 C = 6202.885468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.593 3.407 5 O -0.497 6.497 6 C -0.070 4.070 7 C -0.123 4.123 8 C -0.222 4.222 9 C 0.003 3.997 10 C -0.076 4.076 11 O -0.153 6.153 12 C 0.098 3.902 13 C 0.117 3.883 14 N -0.621 5.621 15 C -0.295 4.295 16 H 0.082 0.918 17 C -0.025 4.025 18 N -0.937 5.937 19 Si 1.074 2.926 20 H -0.296 1.296 21 H -0.294 1.294 22 H -0.287 1.287 23 C 0.076 3.924 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.080 0.920 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 -18.593 -17.445 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.381 3.619 5 O -0.373 6.373 6 C -0.121 4.121 7 C -0.144 4.144 8 C -0.241 4.241 9 C -0.049 4.049 10 C -0.132 4.132 11 O -0.050 6.050 12 C -0.005 4.005 13 C -0.011 4.011 14 N -0.349 5.349 15 C -0.422 4.422 16 H 0.100 0.900 17 C -0.223 4.223 18 N -0.580 5.580 19 Si 0.907 3.093 20 H -0.224 1.224 21 H -0.222 1.222 22 H -0.214 1.214 23 C -0.049 4.049 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.154 -18.278 -17.011 26.595 hybrid contribution -1.744 0.452 -0.219 1.815 sum -10.898 -17.826 -17.230 27.082 Atomic orbital electron populations 1.22179 0.95658 1.01941 1.02528 1.21721 0.94850 0.82236 1.03213 1.47943 1.64135 1.14018 1.06286 1.16714 0.78992 0.85139 0.81091 1.90917 1.44008 1.17364 1.85022 1.22252 1.06642 0.86748 0.96491 1.21949 1.00763 1.01088 0.90588 1.21560 1.06411 0.95243 1.00868 1.22845 1.01747 0.98880 0.81458 1.20370 1.00138 0.91717 1.01020 1.84280 1.60545 1.33299 1.26836 1.23722 0.99344 0.93603 0.83876 1.22677 0.91020 0.90477 0.96902 1.45767 1.02256 1.41133 1.45710 1.20147 0.96104 1.09591 1.16323 0.90019 1.25675 0.96611 1.00922 0.99075 1.70924 1.35502 1.25677 1.25927 0.83669 0.75732 0.74270 0.75627 1.22406 1.22237 1.21426 1.23506 0.94281 0.89725 0.97415 0.92225 0.92333 0.91768 0.89901 0.89916 0.82336 0.82985 0.89789 0.90289 0.89209 0.86432 0.93968 0.93110 0.93040 0.90289 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.66 37.16 0.36 -1.30 16 2 C 0.10 1.17 5.72 -4.04 -0.02 1.15 16 3 N -0.59 -9.36 2.77 -167.27 -0.46 -9.82 16 4 C 0.59 10.26 7.09 -12.86 -0.09 10.17 16 5 O -0.50 -10.54 12.40 5.20 0.06 -10.48 16 6 C -0.07 -0.99 6.52 -36.80 -0.24 -1.23 16 7 C -0.12 -1.58 10.63 -39.39 -0.42 -2.00 16 8 C -0.22 -2.21 10.77 -39.89 -0.43 -2.64 16 9 C 0.00 0.03 7.31 -35.41 -0.26 -0.23 16 10 C -0.08 -0.38 10.41 36.01 0.37 0.00 16 11 O -0.15 -1.76 5.75 4.99 0.03 -1.73 16 12 C 0.10 1.85 4.80 -67.68 -0.32 1.53 16 13 C 0.12 2.57 8.09 -8.51 -0.07 2.50 16 14 N -0.62 -16.63 3.69 -184.64 -0.68 -17.31 16 15 C -0.30 -9.05 11.09 -15.06 -0.17 -9.22 16 16 H 0.08 2.61 8.05 -52.49 -0.42 2.19 16 17 C -0.02 -0.77 5.50 -17.43 -0.10 -0.87 16 18 N -0.94 -30.78 13.70 55.49 0.76 -30.02 16 19 Si 1.07 28.68 25.10 -169.99 -4.27 24.41 16 20 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 21 H -0.29 -7.28 6.35 56.52 0.36 -6.92 16 22 H -0.29 -7.50 6.66 56.52 0.38 -7.12 16 23 C 0.08 1.81 5.29 -8.38 -0.04 1.76 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.65 6.59 -51.93 -0.34 0.31 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.89 5.73 -51.93 -0.30 0.60 16 28 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 29 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.12 1.99 7.94 -51.93 -0.41 1.57 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.18 6.36 -51.93 -0.33 0.85 16 37 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 38 H 0.08 1.99 5.26 -51.93 -0.27 1.72 16 39 H 0.05 1.15 4.01 -51.93 -0.21 0.94 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -36.30 311.94 -6.58 -42.88 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.30 Total: -2.25 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.43 Total: -0.37 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.38 Total: -57.15 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -4.27 Total: 24.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.30 -6.58 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949627949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.717 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds