Wall clock time and date at job start Tue Mar 31 2020 00:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47061 * 2 1 4 4 C 1.34779 * 119.99845 * 274.85961 * 3 2 1 5 5 O 1.21691 * 119.99430 * 183.11295 * 4 3 2 6 6 C 1.46655 * 120.00192 * 3.10618 * 4 3 2 7 7 C 1.36544 * 125.98473 * 185.55927 * 6 4 3 8 8 C 1.40363 * 106.70705 * 179.97438 * 7 6 4 9 9 C 1.35138 * 107.11469 * 359.97438 * 8 7 6 10 10 C 1.50701 * 125.61647 * 180.02562 * 9 8 7 11 11 O 1.33936 * 108.76501 * 359.75597 * 9 8 7 12 12 C 1.46502 * 119.99681 * 94.85543 * 3 2 1 13 13 C 1.53491 * 114.20558 * 231.71638 * 12 3 2 14 14 N 1.47070 * 87.98574 * 220.15461 * 13 12 3 15 15 C 1.36935 * 136.05548 * 207.09555 * 14 13 12 16 16 H 1.08002 * 120.00515 * 354.69272 * 15 14 13 17 17 C 1.38815 * 120.00155 * 174.70026 * 15 14 13 18 18 N 1.31613 * 120.00401 * 183.81027 * 17 15 14 19 19 Si 1.86799 * 119.99649 * 3.80955 * 17 15 14 20 20 H 1.48504 * 109.46972 * 174.25532 * 19 17 15 21 21 H 1.48497 * 109.47282 * 294.25384 * 19 17 15 22 22 H 1.48500 * 109.47108 * 54.25559 * 19 17 15 23 23 C 1.47056 * 87.88579 * 27.34174 * 14 13 12 24 24 H 1.09003 * 109.46948 * 299.99683 * 1 2 3 25 25 H 1.08998 * 109.47237 * 59.99631 * 1 2 3 26 26 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46948 * 240.00317 * 2 1 3 28 28 H 1.08998 * 109.47237 * 120.00369 * 2 1 3 29 29 H 1.08000 * 126.64817 * 0.02562 * 7 6 4 30 30 H 1.08004 * 126.44780 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.46531 * 90.00737 * 10 9 8 32 32 H 1.09005 * 109.46801 * 210.00373 * 10 9 8 33 33 H 1.08998 * 109.47514 * 330.00320 * 10 9 8 34 34 H 1.08996 * 113.28258 * 4.78723 * 12 3 2 35 35 H 1.08996 * 113.46907 * 105.37404 * 13 12 3 36 36 H 1.09004 * 113.47256 * 334.92954 * 13 12 3 37 37 H 0.97009 * 120.00099 * 5.00952 * 18 17 15 38 38 H 1.08997 * 113.46722 * 87.44033 * 23 14 13 39 39 H 1.08999 * 113.47307 * 217.88149 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0495 -1.1630 5 8 2.6087 3.1766 -1.1686 6 6 1.7399 1.4184 -2.4218 7 6 1.9154 1.9359 -3.6731 8 6 1.3779 1.0036 -4.5743 9 6 0.9044 -0.0293 -3.8428 10 6 0.2388 -1.2634 -4.3950 11 8 1.1295 0.2218 -2.5466 12 6 2.3638 2.0360 1.2642 13 6 1.6956 3.4027 1.4682 14 7 2.9650 3.8804 2.0368 15 6 3.3428 4.8415 2.9361 16 1 2.6074 5.5202 3.3421 17 6 4.6713 4.9437 3.3257 18 7 5.0220 5.8172 4.2455 19 14 5.9611 3.8411 2.5445 20 1 7.3087 4.2381 3.0257 21 1 5.6978 2.4286 2.9196 22 1 5.9021 3.9802 1.0672 23 6 3.6505 2.8760 1.2099 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3788 2.8793 -3.9214 30 1 1.3491 1.0942 -5.6502 31 1 0.9928 -2.0255 -4.5921 32 1 -0.4810 -1.6433 -3.6699 33 1 -0.2769 -1.0141 -5.3224 34 1 2.2956 1.3721 2.1260 35 1 0.8777 3.3828 2.1884 36 1 1.4246 3.8971 0.5353 37 1 4.3439 6.3385 4.7031 38 1 3.8948 3.2313 0.2088 39 1 4.4981 2.4072 1.7098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949627949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:35 Heat of formation + Delta-G solvation = 37.130991 kcal Electronic energy + Delta-G solvation = -22337.310985 eV Core-core repulsion = 19055.876853 eV Total energy + Delta-G solvation = -3281.434132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74547 -41.66263 -38.98905 -36.95180 -34.60858 -34.16290 -32.85512 -31.49748 -29.79596 -28.08773 -27.07635 -25.19183 -24.42326 -22.91442 -22.28212 -21.75441 -20.60474 -19.65375 -18.49874 -17.58400 -17.48145 -17.22540 -16.51525 -16.37227 -15.53042 -15.48022 -15.16239 -14.92695 -14.50434 -14.20728 -14.00500 -13.83902 -13.77777 -13.69428 -13.50553 -13.18825 -13.09407 -12.75999 -12.62500 -12.56484 -12.22436 -11.93294 -11.48788 -11.17768 -11.08315 -10.98221 -10.93180 -9.78743 -9.38552 -9.18984 -8.68920 -5.51703 0.01136 1.31798 1.36129 1.45222 1.49226 1.65179 1.97275 2.06655 2.48450 3.01528 3.19147 3.42989 3.50793 3.85709 3.94825 4.05113 4.09357 4.32781 4.38327 4.50835 4.53510 4.57710 4.62127 4.67189 4.68980 4.79077 4.80184 4.82115 4.95175 5.02322 5.06658 5.12496 5.17440 5.38767 5.50490 5.64896 5.89038 5.91163 6.29697 6.65497 6.95749 7.26697 8.22393 8.85921 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.004751 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.991097 B = 5892.220865 C = 6202.885468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.589 5.589 4 C 0.589 3.411 5 O -0.551 6.551 6 C -0.101 4.101 7 C -0.127 4.127 8 C -0.232 4.232 9 C 0.023 3.977 10 C -0.076 4.076 11 O -0.150 6.150 12 C 0.134 3.866 13 C 0.114 3.886 14 N -0.649 5.649 15 C -0.290 4.290 16 H 0.052 0.948 17 C -0.079 4.079 18 N -0.968 5.968 19 Si 1.112 2.888 20 H -0.298 1.298 21 H -0.258 1.258 22 H -0.285 1.285 23 C 0.068 3.932 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.150 0.850 30 H 0.180 0.820 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -22.915 -19.494 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.379 3.621 5 O -0.432 6.432 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.251 4.251 9 C -0.030 4.030 10 C -0.132 4.132 11 O -0.047 6.047 12 C 0.029 3.971 13 C -0.012 4.012 14 N -0.378 5.378 15 C -0.418 4.418 16 H 0.070 0.930 17 C -0.271 4.271 18 N -0.613 5.613 19 Si 0.939 3.061 20 H -0.226 1.226 21 H -0.185 1.185 22 H -0.212 1.212 23 C -0.057 4.057 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.167 0.833 30 H 0.198 0.802 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.419 -22.676 -19.081 31.414 hybrid contribution -1.543 1.764 0.236 2.355 sum -11.961 -20.911 -18.845 30.586 Atomic orbital electron populations 1.22128 0.94429 1.03597 1.01485 1.22060 0.95790 0.79562 1.04880 1.47961 1.63781 1.15548 1.04713 1.17112 0.78024 0.84615 0.82309 1.90878 1.46519 1.19710 1.86053 1.21588 1.09871 0.88571 0.95257 1.22164 1.00133 1.01265 0.91203 1.21877 1.06512 0.94668 1.02034 1.23795 0.99196 0.99593 0.80368 1.20659 1.00689 0.89925 1.01952 1.84256 1.60267 1.31973 1.28174 1.23188 0.94894 0.92761 0.86237 1.22769 0.90044 0.92330 0.96100 1.45889 1.05178 1.40925 1.45804 1.20050 0.95635 1.09683 1.16418 0.93024 1.26952 0.98930 1.01889 0.99311 1.71011 1.35276 1.27318 1.27734 0.83199 0.73314 0.74689 0.74872 1.22582 1.18477 1.21208 1.23597 0.96475 0.89824 0.95825 0.93016 0.93646 0.88684 0.88854 0.87620 0.83254 0.80246 0.87906 0.89083 0.87040 0.83278 0.92677 0.94553 0.94332 0.91906 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.66 71.98 0.70 -1.95 16 2 C 0.10 1.90 5.72 86.38 0.49 2.39 16 3 N -0.59 -17.63 2.77 -801.34 -2.22 -19.85 16 4 C 0.59 20.31 7.09 86.44 0.61 20.93 16 5 O -0.55 -24.24 12.40 -4.32 -0.05 -24.29 16 6 C -0.10 -2.78 6.52 24.07 0.16 -2.62 16 7 C -0.13 -3.17 10.63 22.39 0.24 -2.94 16 8 C -0.23 -3.98 10.77 22.07 0.24 -3.74 16 9 C 0.02 0.34 7.31 24.97 0.18 0.53 16 10 C -0.08 -0.37 10.41 71.24 0.74 0.38 16 11 O -0.15 -3.03 5.75 -5.05 -0.03 -3.06 16 12 C 0.13 4.82 4.80 45.55 0.22 5.04 16 13 C 0.11 5.04 8.09 83.17 0.67 5.72 16 14 N -0.65 -35.22 3.69 -738.08 -2.72 -37.95 16 15 C -0.29 -18.35 11.09 84.03 0.93 -17.42 16 16 H 0.05 3.48 8.05 -2.91 -0.02 3.45 16 17 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 18 N -0.97 -65.57 13.70 21.65 0.30 -65.27 16 19 Si 1.11 58.35 25.10 68.60 1.72 60.07 16 20 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 21 H -0.26 -11.99 6.35 99.48 0.63 -11.36 16 22 H -0.29 -14.73 6.66 99.48 0.66 -14.07 16 23 C 0.07 3.19 5.29 83.27 0.44 3.63 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 0.89 6.59 -2.39 -0.02 0.87 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.67 5.73 -2.39 -0.01 1.66 16 28 H 0.11 1.61 7.90 -2.39 -0.02 1.59 16 29 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.15 4.49 7.94 -2.39 -0.02 4.47 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.74 6.36 -2.38 -0.02 1.72 16 37 H 0.25 16.75 8.73 -92.70 -0.81 15.94 16 38 H 0.06 3.23 5.26 -2.39 -0.01 3.22 16 39 H 0.05 2.25 4.01 -2.39 -0.01 2.24 16 Total: -1.00 -83.52 311.94 3.98 -79.53 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.90 Total: 5.47 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.09 Total: 5.35 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -4.64 Total: -123.07 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.08 Total: -27.35 kcal Atomic # 14 Polarization: 58.35 SS G_CDS: 1.72 Total: 60.07 kcal Total: -83.52 3.98 -79.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949627949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.662 kcal (2) G-P(sol) polarization free energy of solvation -83.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds