Wall clock time and date at job start Tue Mar 31 2020 00:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46801 * 2 1 4 4 C 1.34779 * 119.99629 * 273.49636 * 3 2 1 5 5 O 1.21615 * 120.00094 * 174.10127 * 4 3 2 6 6 C 1.47383 * 119.99812 * 354.10612 * 4 3 2 7 7 C 1.47016 * 127.19150 * 313.56561 * 6 4 3 8 8 C 1.34181 * 105.95385 * 180.02562 * 7 6 4 9 9 O 1.34217 * 109.12494 * 0.02562 * 8 7 6 10 10 C 1.33657 * 110.90590 * 359.72360 * 9 8 7 11 11 C 1.50700 * 125.80114 * 180.28890 * 10 9 8 12 12 C 1.46497 * 120.00555 * 93.50343 * 3 2 1 13 13 C 1.53492 * 114.20753 * 119.99552 * 12 3 2 14 14 N 1.47067 * 87.98554 * 87.52291 * 13 12 3 15 15 C 1.36933 * 136.05927 * 207.08503 * 14 13 12 16 16 H 1.08004 * 119.99846 * 8.78192 * 15 14 13 17 17 C 1.38810 * 120.00235 * 188.77939 * 15 14 13 18 18 N 1.31626 * 120.00025 * 195.21536 * 17 15 14 19 19 Si 1.86795 * 119.99994 * 15.22089 * 17 15 14 20 20 H 1.48502 * 109.47351 * 269.99787 * 19 17 15 21 21 H 1.48500 * 109.47095 * 29.99944 * 19 17 15 22 22 H 1.48493 * 109.47345 * 149.99798 * 19 17 15 23 23 C 1.47067 * 87.88628 * 27.33836 * 14 13 12 24 24 H 1.09002 * 109.47052 * 60.00892 * 1 2 3 25 25 H 1.09000 * 109.46675 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47647 * 300.00645 * 1 2 3 27 27 H 1.08993 * 109.47332 * 239.99683 * 2 1 3 28 28 H 1.09008 * 109.46644 * 119.99212 * 2 1 3 29 29 H 1.07999 * 127.02305 * 0.03237 * 7 6 4 30 30 H 1.07998 * 125.43802 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47234 * 270.18413 * 11 10 9 32 32 H 1.09002 * 109.47524 * 30.19031 * 11 10 9 33 33 H 1.09004 * 109.46937 * 150.18341 * 11 10 9 34 34 H 1.09001 * 113.27947 * 346.92833 * 12 3 2 35 35 H 1.09003 * 113.46950 * 332.74162 * 13 12 3 36 36 H 1.09004 * 113.46992 * 202.29863 * 13 12 3 37 37 H 0.96996 * 119.99769 * 354.94656 * 18 17 15 38 38 H 1.09003 * 113.46356 * 87.44165 * 23 14 13 39 39 H 1.09000 * 113.47202 * 217.87841 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1758 2.0403 -1.1651 5 8 2.4774 3.2184 -1.1614 6 6 1.9822 1.3332 -2.4436 7 6 2.5175 0.0170 -2.8212 8 6 2.0831 -0.2136 -4.0696 9 8 1.3437 0.8296 -4.4776 10 6 1.2653 1.7612 -3.5224 11 6 0.5151 3.0645 -3.6215 12 6 2.3356 2.0461 1.2663 13 6 3.7947 2.5070 1.3868 14 7 3.3972 3.7639 0.7349 15 6 4.0140 4.7130 -0.0357 16 1 5.0137 4.5411 -0.4067 17 6 3.3545 5.8959 -0.3402 18 7 3.8026 6.6693 -1.3064 19 14 1.8313 6.3901 0.6214 20 1 0.6245 5.8366 -0.0440 21 1 1.9234 5.8555 2.0038 22 1 1.7348 7.8712 0.6690 23 6 2.0472 3.5563 1.2802 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1342 -0.6319 -2.2170 30 1 2.2947 -1.0974 -4.6531 31 1 1.1744 3.8336 -4.0238 32 1 -0.3435 2.9403 -4.2815 33 1 0.1716 3.3622 -2.6308 34 1 1.9623 1.5107 2.1393 35 1 4.4886 1.9110 0.7940 36 1 4.1248 2.6381 2.4174 37 1 4.6336 6.4509 -1.7564 38 1 1.9166 3.9641 2.2826 39 1 1.2523 3.8543 0.5965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949642531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:45 Heat of formation + Delta-G solvation = 89.104523 kcal Electronic energy + Delta-G solvation = -23310.704213 eV Core-core repulsion = 20031.523823 eV Total energy + Delta-G solvation = -3279.180391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32673 -39.86120 -36.73028 -35.13542 -32.58441 -31.96519 -31.66218 -29.86781 -27.58399 -26.57265 -25.09651 -23.89678 -22.89752 -21.92021 -20.96029 -19.37269 -18.11629 -17.16638 -16.96215 -16.14227 -15.88266 -15.42458 -14.65939 -14.43968 -14.15527 -13.70667 -13.45796 -13.30182 -13.05335 -13.01591 -12.75418 -12.69500 -12.68109 -12.09738 -11.64034 -11.61888 -11.41623 -11.05487 -10.93776 -10.68021 -10.35391 -9.97810 -9.48821 -9.45665 -8.93340 -8.76564 -8.30843 -8.21840 -7.81632 -6.66101 -5.93267 -2.77523 1.82623 2.35348 3.02950 3.48663 3.61044 3.67257 3.78430 3.83023 4.73744 4.90720 4.91862 5.07663 5.10679 5.16897 5.20372 5.41522 5.50093 5.54664 5.67178 5.72256 5.77918 5.79635 5.86705 5.90468 5.98691 6.04458 6.19284 6.27616 6.35674 6.37837 6.46886 6.50779 6.62477 6.74847 7.25332 7.38021 7.48221 8.09652 8.56370 9.16821 9.33176 9.92011 10.74838 11.58133 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.008199 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.434789 B = 3414.274529 C = 4154.049052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.542 3.458 5 O -0.410 6.410 6 C -0.215 4.215 7 C -0.190 4.190 8 C -0.048 4.048 9 O -0.181 6.181 10 C 0.050 3.950 11 C -0.073 4.073 12 C 0.105 3.895 13 C 0.100 3.900 14 N -0.595 5.595 15 C -0.252 4.252 16 H 0.068 0.932 17 C -0.019 4.019 18 N -0.947 5.947 19 Si 1.066 2.934 20 H -0.299 1.299 21 H -0.288 1.288 22 H -0.304 1.304 23 C 0.100 3.900 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.202 0.798 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.255 0.745 38 H 0.044 0.956 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.913 -17.854 -0.266 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.335 5.335 4 C 0.326 3.674 5 O -0.276 6.276 6 C -0.219 4.219 7 C -0.209 4.209 8 C -0.114 4.114 9 O -0.078 6.078 10 C -0.002 4.002 11 C -0.130 4.130 12 C -0.001 4.001 13 C -0.028 4.028 14 N -0.322 5.322 15 C -0.378 4.378 16 H 0.086 0.914 17 C -0.216 4.216 18 N -0.592 5.592 19 Si 0.900 3.100 20 H -0.228 1.228 21 H -0.215 1.215 22 H -0.233 1.233 23 C -0.027 4.027 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.218 0.782 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.924 -15.803 -0.613 18.159 hybrid contribution 1.482 -1.602 0.112 2.185 sum -7.441 -17.405 -0.502 18.936 Atomic orbital electron populations 1.22189 0.96682 1.01321 1.02357 1.21604 0.93991 0.83473 1.02782 1.47281 1.67875 1.13230 1.05068 1.17587 0.79994 0.87752 0.82064 1.91443 1.38327 1.12575 1.85296 1.21477 1.06260 0.96772 0.97434 1.22795 1.04903 0.96545 0.96681 1.23709 0.98925 0.92230 0.96559 1.83707 1.57985 1.25291 1.40852 1.22632 0.99948 0.91667 0.85933 1.20393 0.98891 0.89141 1.04541 1.22646 0.97965 0.94542 0.84916 1.22856 0.94290 0.89726 0.95951 1.45797 1.05587 1.24989 1.55853 1.19708 1.00229 0.94698 1.23200 0.91380 1.25387 1.03817 0.93177 0.99183 1.70872 1.22562 1.43297 1.22464 0.83710 0.76021 0.74552 0.75720 1.22782 1.21506 1.23278 1.22903 0.91614 0.91265 0.96878 0.92692 0.92291 0.92502 0.90002 0.91164 0.83020 0.78158 0.88842 0.90832 0.88998 0.89301 0.94307 0.94396 0.93539 0.93886 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.22 37.16 0.38 -1.49 16 2 C 0.10 1.29 5.98 -4.04 -0.02 1.27 16 3 N -0.60 -10.26 2.75 -167.01 -0.46 -10.72 16 4 C 0.54 11.13 6.78 -12.54 -0.09 11.05 16 5 O -0.41 -10.63 10.21 5.26 0.05 -10.58 16 6 C -0.21 -3.77 5.40 -103.28 -0.56 -4.33 16 7 C -0.19 -2.61 9.04 -37.46 -0.34 -2.95 16 8 C -0.05 -0.58 12.03 29.30 0.35 -0.23 16 9 O -0.18 -2.67 10.52 7.63 0.08 -2.59 16 10 C 0.05 0.83 7.37 -34.96 -0.26 0.57 16 11 C -0.07 -1.16 10.05 36.01 0.36 -0.79 16 12 C 0.10 1.87 4.87 -67.68 -0.33 1.54 16 13 C 0.10 2.07 8.27 -8.51 -0.07 2.00 16 14 N -0.59 -15.43 2.04 -184.61 -0.38 -15.80 16 15 C -0.25 -7.70 8.85 -15.06 -0.13 -7.84 16 16 H 0.07 2.26 8.06 -52.48 -0.42 1.83 16 17 C -0.02 -0.59 5.18 -17.43 -0.09 -0.68 16 18 N -0.95 -31.78 13.70 55.49 0.76 -31.02 16 19 Si 1.07 28.95 25.52 -169.99 -4.34 24.61 16 20 H -0.30 -7.94 6.97 56.52 0.39 -7.54 16 21 H -0.29 -7.24 5.68 56.52 0.32 -6.92 16 22 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 23 C 0.10 2.24 4.52 -8.37 -0.04 2.21 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.96 4.24 -51.93 -0.22 0.74 16 28 H 0.07 0.73 8.04 -51.92 -0.42 0.31 16 29 H 0.15 1.76 7.23 -52.49 -0.38 1.38 16 30 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.57 7.93 -51.93 -0.41 1.16 16 34 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.25 8.55 8.73 -40.82 -0.36 8.20 16 38 H 0.04 0.93 7.00 -51.93 -0.36 0.57 16 39 H 0.06 1.36 5.38 -51.93 -0.28 1.08 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -37.39 312.80 -5.93 -43.32 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.54 Total: -2.27 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.83 Total: 0.34 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.07 Total: -57.54 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.13 Total: -13.16 kcal Atomic # 14 Polarization: 28.95 SS G_CDS: -4.34 Total: 24.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.39 -5.93 -43.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949642531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.425 kcal (2) G-P(sol) polarization free energy of solvation -37.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds